Basic Information

Insect: Drosophila lowei
Gene Symbol: -
Assembly: GCA_008121275.1
Location: CM017777.1:35575124-35579086[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.15 11 6.5 0.1 3 21 203 221 202 224 0.82

2 5 2.5 1.8e+02 2.7 1.9 1 23 231 253 231 253 0.96

3 5 0.00039 0.029 14.7 0.1 1 23 260 282 260 282 0.98

4 5 0.015 1.1 9.7 2.0 2 20 296 314 296 316 0.93

5 5 0.65 49 4.5 0.0 2 19 321 338 321 339 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.15	11	6.5	0.1	3	21	203	221	202	224	0.82
2	5	2.5	1.8e+02	2.7	1.9	1	23	231	253	231	253	0.96
3	5	0.00039	0.029	14.7	0.1	1	23	260	282	260	282	0.98
4	5	0.015	1.1	9.7	2.0	2	20	296	314	296	316	0.93
5	5	0.65	49	4.5	0.0	2	19	321	338	321	339	0.96

Sequence Information

Coding Sequence: ATGGAGAGGTTTGCATTTAAGATCGACGCAGCGCTCAAAGCGAATCTGTACAAGATCTGCCGTCTCTGCGGCATCGATAATCCAGGCAAGGTGCCAATTCTGCTGCCCAATGAGGCAAATATTATAGACCTGGACGATCCTAGTCTTTCCCAAAAGGTGCTCGAATTGGTCGGCTTTACGGTGACAGTCGACGACAAAATGCCGCAGACAATGTGCAGCCTTTGCGTGGATAAAATCAATGATTTTTACGAGTTTAGGGAAATGTGCTATGCCACGAATAAACAGACGCGCAACCTGCTGGGCCTCCAGCAGATGGAACCCCTAAAGCTCGTGGGCAGCCAGCCCATAGTTAAGGCAGAGCCGCAGACGACGGTAAAGCGAGGACGAAAACGCAAGACGGATGAGAGCTTTCTGAAAGCTAAGATTTCTGAAGTTCCAGAGGTAAAAAAGGAGCCCATGGCATGGCGAAAAAAGCAGAGATTGCAGCAGacgcagcatcagcagcagcagctgctggaaACCAGAACGGAGCCAGAAATCAAGAACGAGCCCATGGACACGGAAAGCCGTATCCGTCTGCCAGGAAAAAAGGGCCGCAAGGCGATATGCAGTGTCTGTGGCGAGAAGTTCGCCAGCAAGGATCTGGCCGACGAGCATAAGAGCGCGGTGCATGTACCCTCGATACCGCGATACATTTGCAACGCCTGCAATCAGACGCATCACAACCAGAGCGACATTCGGGCCCATCAGCTCTGGCACAAGCTGTCGAAGACACCCTACAAGTGCCCGCTGTGCGACGTGAATGTGCCCAACAATTACGCCTTTGCCCGCCACCTGCGTGAGCATACGCCACCGACTCCTGTGCAGCTGCTTGTCCTCGATCGCGAGTGTCCACTGTGCAAGAAAACATTCGTGACGAACTTCTTCTACAATACCCATCGGTGTGCCATACGCAAACGCAAGTGTGGTGGCTGCAATCGAGCCCTCAACACAGAGGTCGCCTTCATGCGGCATGCCCCCGCCTGCTCAAAGATCTACCTCAATCACTCGAAGCACATTCTGCCCGAGGCAGCCAACACCGAATCACAGATGTGCATTAAGAACGAGGTGGAGGAAGACACCCACAACGCCAGCgatgcccctgcctctgctaTACCGCCGGACTTTATGCTGAACGAGCATATGCAGCCGGTAGTGGTGATCGAGCGCCTGGCCTCTCCTCTGCTGCGAGCCTCAGCAGAGCCGCAAAATACGCTGGGGGCCAGCAAGAGCAAAAATAGCGAGCGAGTTTCCTCGAAAAACTATTTGAAGCGCGTCGACGAGTTGCTGAAGAACACAATGAGCACGCTGGTGAGCATCAAGCATGAGCCGGAGGTGCATATAAATGACACAATGCCGGCAGCCGCCGTGCAGCCGGGAAGCGAACCGGAGCCAGAaatgcaggaggaggaggaagaacAAGAACCCCCAAGCTTCAGCGATTTCCATGCAGCCAACGATGACAGCGATGAGGAAGAGCCCGAAGCTGCGGCAGTTGCGGCAGTGGCTCCGGAACCTGTCGCAATAGCTGCCAGCATAGACGACAATGTGCCCAGTGTATCTGTGAAGCAGGAGCCTCGCGATGAGGCCTACGAAAAGCAGTCGCCAGTCAAACAGGAGccgctgaagctgaagctcaAAATCACCAAGAATCATGGCAAGCTGAACTCGTCGCTGATCGATGACCTCGACGAGGCGGggcagagcaggagcagcaagaagaaaaagaagcgCAAGCACAAGGAGCGGGAAAAAGAAGTCTACAGCCAACCAAAAGCTGAGGATCCCCCAATAGTGAACATCAAACAAGAGCGTCTAGACACCGATGATGTGCCCGATGGAAATCAGGCGACAGATTTCCAGCCACAGGCCACTGTGATGACTAGCATACCGATGTCCCATCTGGAGAGTAGCTTCAACGACAACGACATAACGGCACAGGACGAGCCAATGCCACAGGAATGCCCGGAGCCCGAGGAAGATGTTAAGCCCAATCGCATGGAACTGGATCGCCTCATGCAAATCACGCATGTCGCCAGCGGTGTGGACATTGCCGAAGAAGCCATGCCCCTGGATAAGGCCGTTGAAGCTACCCCCGATGAGCCACTGCTCTCTGAAAAGAGATTCAAATCGCCGCATAAAGCAAAAGCTGCCAAGCCTACTGCCCGTAAGAGTACTGGAGGCGCCACACGCAAGCCCCCAGCAGAAGAGTCGCCCCGGGAGACGGCACCCTTGCTGCAGATTGTCGCCGTGGAAAGTGGAGAGGCCGTATCGTTCAACATGCCTCCCAATATTTGCATTAAACCAGAACCTCGTAATCGCGGCTACGGGGACGATGAGCCCGAGGACGAGCCGACGGCGGAGATCAATCACAATGAGAAGATCGACGAGGAGAATGCCTACATAAACAGCCTAGACTTTAACAACATGGCCGTGAAGCAGGAGAAGGACCTGGACATTTCCGATCCGACTGCAAATGGCTCTGAGCCGGAGCTCTCTATGCACCTGAGCCACAACGGTTTGGAGAGGGGCAGTGATAGCGAGGACTCTGATGGCGAGGACAGTGCTTCTTCGGCCGATGAAGCCGAGGAAGCTATGGAGGAGGATGAGGGCGAGCGTATTTATCGCGAAATTGAATTGCCATTACTAGAGCCGGAAAATCaaggagaagcagccacaCAGCAGAGCGAAGAGAAATCGGAAAAGTCCATGCAGGTGCAGGAGGCACCACCCGAGAATATGGAGGTACAGACGCCTGTGGCCGCGCCAGAGGTATTGGGAGGGGTAGAACTGCCCAAGAAAAGTCTTGAAACAGTTGGGGAGATAGTGCAGCCACAGGAAACTCCCCCAGCCGATGCTCCAGTGGAAACATTGCCGGAGTTAGAAACTCTGCAAGATTTTGCTTCCCTGCTGGAAGATTCAGAATTAATTGGAGATGTAGAGCCGCCGCAAGAAACTCCCAAAGAAGTTGGTGATATAGAGCCACCCCTGAACCCTCCAGAAGTTGTTGGAGTAACACAGCATCAGCTACTGGAAAGTCCAGAAGTACTTGGGGAGGCAGAACCGCAAATGGAAACGCCAGAGGCACTTGCGGAGATAGAGCCACCACTATTGAGAGTGCCAGAGTCAGTCACCGCTTTTAATTTTGTAATAACCAACATCTGCAGCCAAGCGGCAGAGATTCCAGAATCCGCTAGTGGTCACAGTTCAGCCATCCCGTATCTTAGTTCTCCCCCGCCGAATCCAGAGTCGCTGGAGAAATCGGACACTGAGCGCGAAAGCCCCGACTGCCAAGCGGACACCCTTCCAGAGATTAGCCTCAATGCTCCCAAAGACATTGAAACTCAGGCCTTGCCACTCAACTTGGAGGGAAGCAGCTCCGTCTGCgacgaggagcagcagaatgTGCTCAACCATGAGCTCTCCGAGCAGCAAGCGCCCGTCGATGGGAATGTGGAGCAGTCGGCAGAAGCCGAGGAAAAGCTTTTGGCAACAGTGGAAGAGGAACTGCCGCCACAACTCGAGGAGGAGCTGCCTGGGCCGTCGTCGAGGCCAAACGAAGAGACTGAGAACCGCATcaatgagcagcagcaggagatgGACCTGGAGGGGCAACGGCAGCCGCGTTGCCAGGTCGAAGATGACTCCAACATCAACGAAATTgccgaaaacaacaataatgCCAACATAGAGCGCGAGCTGCAGGACGATGCGAATGTGCCTCAGGAAAACGTTACTCCCTAG
Protein Sequence: MERFAFKIDAALKANLYKICRLCGIDNPGKVPILLPNEANIIDLDDPSLSQKVLELVGFTVTVDDKMPQTMCSLCVDKINDFYEFREMCYATNKQTRNLLGLQQMEPLKLVGSQPIVKAEPQTTVKRGRKRKTDESFLKAKISEVPEVKKEPMAWRKKQRLQQTQHQQQQLLETRTEPEIKNEPMDTESRIRLPGKKGRKAICSVCGEKFASKDLADEHKSAVHVPSIPRYICNACNQTHHNQSDIRAHQLWHKLSKTPYKCPLCDVNVPNNYAFARHLREHTPPTPVQLLVLDRECPLCKKTFVTNFFYNTHRCAIRKRKCGGCNRALNTEVAFMRHAPACSKIYLNHSKHILPEAANTESQMCIKNEVEEDTHNASDAPASAIPPDFMLNEHMQPVVVIERLASPLLRASAEPQNTLGASKSKNSERVSSKNYLKRVDELLKNTMSTLVSIKHEPEVHINDTMPAAAVQPGSEPEPEMQEEEEEQEPPSFSDFHAANDDSDEEEPEAAAVAAVAPEPVAIAASIDDNVPSVSVKQEPRDEAYEKQSPVKQEPLKLKLKITKNHGKLNSSLIDDLDEAGQSRSSKKKKKRKHKEREKEVYSQPKAEDPPIVNIKQERLDTDDVPDGNQATDFQPQATVMTSIPMSHLESSFNDNDITAQDEPMPQECPEPEEDVKPNRMELDRLMQITHVASGVDIAEEAMPLDKAVEATPDEPLLSEKRFKSPHKAKAAKPTARKSTGGATRKPPAEESPRETAPLLQIVAVESGEAVSFNMPPNICIKPEPRNRGYGDDEPEDEPTAEINHNEKIDEENAYINSLDFNNMAVKQEKDLDISDPTANGSEPELSMHLSHNGLERGSDSEDSDGEDSASSADEAEEAMEEDEGERIYREIELPLLEPENQGEAATQQSEEKSEKSMQVQEAPPENMEVQTPVAAPEVLGGVELPKKSLETVGEIVQPQETPPADAPVETLPELETLQDFASLLEDSELIGDVEPPQETPKEVGDIEPPLNPPEVVGVTQHQLLESPEVLGEAEPQMETPEALAEIEPPLLRVPESVTAFNFVITNICSQAAEIPESASGHSSAIPYLSSPPPNPESLEKSDTERESPDCQADTLPEISLNAPKDIETQALPLNLEGSSSVCDEEQQNVLNHELSEQQAPVDGNVEQSAEAEEKLLATVEEELPPQLEEELPGPSSRPNEETENRINEQQQEMDLEGQRQPRCQVEDDSNINEIAENNNNANIERELQDDANVPQENVTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00518084;
90% Identity: iTF_00581154;
80% Identity: -