Basic Information

Insect: Drosophila longiperda
Gene Symbol: Clamp
Assembly: GCA_035042125.1
Location: JAWNLV010000034.1:134748-136978[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0001 0.0068 16.8 1.2 1 23 132 154 132 154 0.99

2 7 0.00019 0.013 15.9 0.7 1 23 378 400 378 400 0.97

3 7 4.3e-06 0.00029 21.1 0.1 1 23 406 428 406 428 0.99

4 7 2.9e-06 0.00019 21.7 3.2 1 23 434 456 434 456 0.99

5 7 3.2e-06 0.00021 21.5 0.3 1 23 462 484 462 484 0.98

6 7 1.4e-06 9.3e-05 22.6 0.4 1 23 490 512 490 512 0.98

7 7 5.9e-05 0.004 17.5 0.1 1 23 518 540 518 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0001	0.0068	16.8	1.2	1	23	132	154	132	154	0.99
2	7	0.00019	0.013	15.9	0.7	1	23	378	400	378	400	0.97
3	7	4.3e-06	0.00029	21.1	0.1	1	23	406	428	406	428	0.99
4	7	2.9e-06	0.00019	21.7	3.2	1	23	434	456	434	456	0.99
5	7	3.2e-06	0.00021	21.5	0.3	1	23	462	484	462	484	0.98
6	7	1.4e-06	9.3e-05	22.6	0.4	1	23	490	512	490	512	0.98
7	7	5.9e-05	0.004	17.5	0.1	1	23	518	540	518	540	0.97

Sequence Information

Coding Sequence: ATGGAAGACCTCACCAAGAACCTAATATTCACAAACGCCATCAACGGCCAACCGACAACGATTCAATACCAAACTGCAGACGGCACCATTCTCAAACAGCCCAAAATCGAGGGACAGAAGGCCGATCAGCAGCCCACCTTTTACTACACAACAAATGGCAATGGCGGCACTGTGAATCTGGCACAGTTGGCCACCACAGACGACAATAAGACTTGCTACATTACACAGCCAGTAGGTGGCTACAATTATGCTCTGGTCAACGGAATGCCTCTCAATCAGGGCACTGTGGGCATCGCCACTGTAGATGCACAAGGACGCATACAGATTGTCAATCAAAATAAGCCAATTGCAGCGacaATTTCGCCGCTGCAAAACACAATATCGAACATCAGCTTTAAGTGTGATGTCTGCTCGGAGATGTTTCAGCATTTGGCACTACTCAACGCTCACAAGCGGATGCACACCGATGGTTCCGATCCGCAGCAGCATAACTCACAGCAATCGAATGATGCCATTACGGTGGTCAATGCACAGGGCCTTGTGCAGACGCAAAACATAATCACCGGCAATGGACAGATGGGTCAGATACAAATCGTTGCTTCCGATTCACTGGAGCCTGTTCAACAGTCCGtcatgcagcagcaacagcagcagcagcagcaacaacagcaggcatcacaacagcaacagcagcacgaCAATTCCAAGTCAAGCAAGTGTATCAATTGCGGCACTGCCATGATGCATCAGTCGAAGCGCAAGGGTCCAAAGCAGGTTCGCTGCGAGTCCTGCATGCAGGCGGAGCAGGcggcgcaacagcaacaaatatttgtggcacCCGATGGACAAATGGCGCATCCTGTACAAATCATATCAACCACACCCCAGGCGCAAGCTCAACTGCAGCAGATTGTAGCCCAGCAAACTGGCAGTACGACTCCCAAGCGAGAGCCGAGCTCATCTGGCCATCATCCGGTAAAGAAGCGCAACTCCCAACAGATGACCAAATGTCAAAAGTGCAATGGCTCCGGCGTCGTATTAATGGgtcaacatacacacacacataccggCGCCAGTGGCTCCGTCAAACAAAATTCTGTCACTGTCAAGACCGaAAATCCCAGTAAACCATTCAGCTGCAACATATGCGGCGGCCTCTTTTCACGCTACTCCAGCCTCTGGTCGCATAAGAAGCTGCACAGCGGCGAGAAGAACTACAAGTGCACCATTTGCGGACTGGCATTTGCCAAGGCCGTCTACCTTAAGAACCATGCGCGCATACATACTGGCGAAAAGCCCTACAAATGTCAAACATGTGGAATGCAGTTCTCGCAATCGCCGCATCTGAAGAATCATGAGCGCACGCACAGCGGTGAACGTCCGTATGTGTGCGGGGTGTGCGACAAGGGATTTGCGCGTCACGCCACGCTGTGGAATCATCGACGCATACACACCGGCGAGAAGCCGTACAAGTGCGAAATATGCGGCTCGGCCTTTTCGCAGGCGGCACACCTGAAGAACCATGCCAAGGTGCACTCCGGTGAGAAGCCTTACAAATGTGAAATATGCTCGGCAGCATTTGCCGATCGTTTTGCGTTGAAACGCCACCGTGGCATACATCAGAAGTATGGACAAACGGCTCCCAGGCAGCCGGCTGGTGATGGGATGGTCGTGCACAAGCAGGAGCTGCCAGACATGGATGACGATGCGCAACAGGAGGTGATCATCGGCGGTTTATAG
Protein Sequence: MEDLTKNLIFTNAINGQPTTIQYQTADGTILKQPKIEGQKADQQPTFYYTTNGNGGTVNLAQLATTDDNKTCYITQPVGGYNYALVNGMPLNQGTVGIATVDAQGRIQIVNQNKPIAATISPLQNTISNISFKCDVCSEMFQHLALLNAHKRMHTDGSDPQQHNSQQSNDAITVVNAQGLVQTQNIITGNGQMGQIQIVASDSLEPVQQSVMQQQQQQQQQQQQASQQQQQHDNSKSSKCINCGTAMMHQSKRKGPKQVRCESCMQAEQAAQQQQIFVAPDGQMAHPVQIISTTPQAQAQLQQIVAQQTGSTTPKREPSSSGHHPVKKRNSQQMTKCQKCNGSGVVLMGQHTHTHTGASGSVKQNSVTVKTENPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQPAGDGMVVHKQELPDMDDDAQQEVIIGGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00537677;
90% Identity: iTF_00479637;
80% Identity: -