Basic Information

Insect: Drosophila longiperda
Gene Symbol: -
Assembly: GCA_035042125.1
Location: JAWNLV010000158.1:2828142-2833836[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.7e-05 0.0025 18.2 3.7 1 23 340 362 340 362 0.94

2 9 1.9e-08 1.3e-06 28.5 2.6 1 23 368 390 368 390 0.98

3 9 8e-06 0.00054 20.2 0.8 1 23 396 418 396 418 0.98

4 9 5.7e-06 0.00039 20.7 1.0 1 23 424 446 424 446 0.97

5 9 2.8e-05 0.0019 18.5 1.4 2 23 537 558 536 558 0.96

6 9 3e-09 2e-07 31.0 1.6 1 23 564 586 564 586 0.98

7 9 0.0036 0.25 11.9 0.9 3 23 594 614 592 614 0.97

8 9 6.5e-05 0.0043 17.4 1.5 1 23 620 642 620 642 0.99

9 9 0.016 1.1 9.9 1.1 1 23 649 673 649 673 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.7e-05	0.0025	18.2	3.7	1	23	340	362	340	362	0.94
2	9	1.9e-08	1.3e-06	28.5	2.6	1	23	368	390	368	390	0.98
3	9	8e-06	0.00054	20.2	0.8	1	23	396	418	396	418	0.98
4	9	5.7e-06	0.00039	20.7	1.0	1	23	424	446	424	446	0.97
5	9	2.8e-05	0.0019	18.5	1.4	2	23	537	558	536	558	0.96
6	9	3e-09	2e-07	31.0	1.6	1	23	564	586	564	586	0.98
7	9	0.0036	0.25	11.9	0.9	3	23	594	614	592	614	0.97
8	9	6.5e-05	0.0043	17.4	1.5	1	23	620	642	620	642	0.99
9	9	0.016	1.1	9.9	1.1	1	23	649	673	649	673	0.95

Sequence Information

Coding Sequence: atggcCATAAATTTCTCGGCCTCCTTTGCGGCCTGCATAGCGGCAGGTCTGAAGGTTCCCCGCCAGATAATGTATTGCATCACCCAGGACACGGGCCAGCCGTATGTCCTCTACAAGGACTCACAAGACGCGGAACGAAATGCGGGCGCCATTGGCGCCAGTGCCGCCCAATGGGGCAGCGACATGTACCCAAATATCCAGCAACAGGCCCAACATCTCagcgcccagcagcagcagcagcagcaacagcagcagcaacagcagcaacaacagaatgCCACAGCTGCCGCACAAGCGGccgcagctgccgctgccgccggcCAGCCACAGAGTCCGCCCGGTGGCCAGGAGCCACGGGACAATGGCAGCGGCGACGGACGCCAGCAGCAGGTGTCGCCATCCTCGAGTCCATATCCATCGGtggtgcaacaacagcagcagcaacgtgcCAATGGCAATGCCGATGAGGATGCCATGAATCAGCTTGCCAATCAGCAGAACTCCGCGCCAAATCCAAACCAAAGCAGCAACGAGCCGCAACATGCGTCGGCAAATGGCGGCGAGGCTGGCAATCCGCACGTGCAGCAGAATGGTGGCGGTGGTCAGCCGCAGGGTGATCCACGTAATGGCTTCCAGACGCCCGACTATTATGCGCCACGGCATGGAGCGGGGCCGCAGGGCGGCATGCTGGCGCCACCAGGTTTTCCGCCGCTGCACTATCTCAAACAGGACGTGCTGCCCATGGAGCAGAATGGCGGTGAATCGTATGCGCTGCCTGAACTGCTGcccggccagcagcagcagcagcagcaacagcaacagcagcagcagcagcaacaaaatgggaCTCAATCAAACCCAAATGCTGGCCAGGCCAATGGCAATGCCAATGAGGGCGCAGCGGCGCCCAATGGGCCAACAGCGGGCGCTGCTGGCAATGGGGCAACGGGAACAACGGGTGGTCGGACGGGACCGGGACGCCCGCAGAAGAATAAGCCGCACAGTGATCTGCGGCTATTCAAGTGCCACACGTGCGGCAAGGACTTCAAGCAGAAGAGCACACTGCTGCAGCACGATCGGATACACACCGACGCCCGTCCATTTCCGTGCTCCGAGTGCGGCAAGCGATTTCGCCAGCAATCGCATCTGACGCAACATCTGCGCATCCATGCCAACGAAAAGCCATTCACGTGTCCCTACTGCTCGCGCAGTTTCCGGCAGCGCGCGATACTCAATCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCGCCGCATCTCATCTTCAAGAATGGGCCGCATCCGACGCTGTGGCCCTCGGATGTGCCCTTCCCGGGCGACGACACGGATAGCAAGGGTGACATTGCCGCCGCCGGCGGTGGCTACCATGACGATGATTCCCAAGGCACACCCGATGGCAGCGGTGGCATGCACTATCCCTCCTACTTCAAGGATGTCAAGGGTCAAAAGATATTGCCGGAGGTGTTGCAACACATTGGAGTGCGGCCAGCGAATATGCCGCTCTACGTGCGCTGCCCCATCTGCGACAAGGAGTTCAAGCAGAAGACAACGCTGCTGCAGCACGGCTGCATCCACATCGAGTCCAGGCCGTATCCCTGCCCGGAGTGCGGCAAACGCTTCCGCCAGCAATCCCATCTCACGCAGCATCTGCGCATCCATACGAACGAGAAGCCCTTCGGCTGTATGTACTGTCCACGCTTCTTCCGCCAGCGAACCATTCTGAATCAGCACTTGCGCATCCACACCGGTGAGAAGCCGTACAAGTGCACCCAGTGTGGCAAGGACTTCAGACAGAAGGCGATTCTGGATCAGCATACGCGCACCCACCAGGTAGGAGATCGTCCGTTTTGCTGCCCCATGCCCAATTGCCGGAGACGCTTTGCCACCGAAAACGAGGTGACGAAGCACATTGACAACCACATGAATCCCAACAGCACCAAAGTGcgccgccagcagcaacagcagcagcagcaggtgcaacagcagcagcaacagcagcagcaacagcaacaggtgcaacagcaacagcagcagcaacaggtgcaacagcagcaaagtaACGTTGCTGCCTCCGCTGCAGTTGTGGCCAATCATCTGATGAACGATGTGAAGAGCTTGGCAGCCCAGCAATTcctcaacaacaataatcccGCCGCAGTGGATAATAAGGCAAACATATTGCCGGCGCGCAGCATGGCTGCCaatgcggcagcagcggcggcagttGCCCAGCAATCGGTTGTGAAGAACGAGCTCTATTTTCCGCAATGCTACGGCCCTCCCTTCCAGCATCCGTTCcatgcccagcagcagcagcaacagcagccgagTGCGGCGCATGCGAATGGACCCACGCCGCCAGTGACGGTGACTGTGGCGAATGCGGTGGCACCCGGCGTTGTGGTGCAACAGAATTCGGCCACCTCTGTGGTGGCCCAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNAGAIGASAAQWGSDMYPNIQQQAQHLSAQQQQQQQQQQQQQQQQNATAAAQAAAAAAAAGQPQSPPGGQEPRDNGSGDGRQQQVSPSSSPYPSVVQQQQQQRANGNADEDAMNQLANQQNSAPNPNQSSNEPQHASANGGEAGNPHVQQNGGGGQPQGDPRNGFQTPDYYAPRHGAGPQGGMLAPPGFPPLHYLKQDVLPMEQNGGESYALPELLPGQQQQQQQQQQQQQQQQNGTQSNPNAGQANGNANEGAAAPNGPTAGAAGNGATGTTGGRTGPGRPQKNKPHSDLRLFKCHTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGDDTDSKGDIAAAGGGYHDDDSQGTPDGSGGMHYPSYFKDVKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNSTKVRRQQQQQQQQVQQQQQQQQQQQQVQQQQQQQQVQQQQSNVAASAAVVANHLMNDVKSLAAQQFLNNNNPAAVDNKANILPARSMAANAAAAAAVAQQSVVKNELYFPQCYGPPFQHPFHAQQQQQQQPSAAHANGPTPPVTVTVANAVAPGVVVQQNSATSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00548975;
90% Identity: iTF_00482402;
80% Identity: -