Dlon008009.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila longiperda
Gene Symbol
-
Assembly
GCA_035042125.1
Location
JAWNLV010000109.1:2680312-2682786[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 5.6e-06 0.00037 20.7 0.6 1 23 301 323 301 323 0.99
2 9 7.9e-07 5.3e-05 23.4 2.0 1 23 329 351 329 351 0.99
3 9 1.9e-08 1.3e-06 28.5 0.5 1 23 357 379 357 379 0.99
4 9 6.3e-05 0.0042 17.4 2.1 1 23 385 407 385 407 0.98
5 9 0.00012 0.0078 16.6 0.0 1 23 414 436 414 436 0.98
6 9 0.00088 0.059 13.8 1.2 1 21 442 462 442 464 0.96
7 9 7.2e-08 4.8e-06 26.7 0.7 1 23 470 492 470 492 0.98
8 9 1.2e-07 7.8e-06 26.0 2.8 1 23 498 520 498 520 0.99
9 9 1.2e-06 8.2e-05 22.8 0.2 1 23 526 548 526 548 0.97

Sequence Information

Coding Sequence
aTGGCCGTGCAACTGAAAAATGCGTATCATCATTTGCCGCTGACAATAACTCCTATCCTCTGCCAGCCGCTGCTGACGCCGTCACCGACGCCGATGCCATTGAAGGCGGAGCCGCCAGATTTAACGTTTCATTGCATGTGCTGTGCGGAATACTTTGTGCATCCCCTGGCACTCTACCAGCACATGAACAACAGGCATCCCAATGAGACGACGCCgcagcaacaagaactgcagcagcatcagcagctgctCGAGGAGCAACAATTGGCTGATGATGATAGCACCGATTATAGCTGGATATTTGAGCCGGTGTGTGAGCTGGAAGTAGCTGCCGATGCGATGGCTTCGCGCAGCGATGAGGAGAGCGACTCTAATACGGAAGATGGGGCGGCGGAGGAGGGCAGCGATGCGGATAGCGATAACGatgacagcgacagcagcagcagcaacagcagcaatagcagcagcagcagttccagcagcagcaccaccaccaacaccacctcAAACGggcacaacagcaactcaaACACGCAGCTGAGCTTGGATAATGGCGCCTACGTGGAGGTGACATCAACTCAGCCCATGCGCACTTTGCTGCCCAATGTGTATCAGTTGCCGACAGCCGATCCCCGCGAATCCACATCCATTATACTTCTAAGGCCAACGTTGAGCATAACGCCAGTGacagcaccaacagcaccCGCATTCGCACCACTGTCCGTATtacagccaacagcagcagcactcgcCACTCAACTTCTGCCGCCCACACTGCACATGGAGTCGCCGATGATTAAACGACGACGTGGTCGCCGGAGCAAGGCGAATGTGGTGACGGATAGTCATTgtgcggcggcggcagctgtCGCCCAGTTGGGCGCAAATGGCCAGAAGTGTTTTCAGTGCACACACTGTGAGGCCTCGTTTCCCAATGCCGGCGATCTGTCCAAGCATGTGCGTTCCCATATCTCCAACAAGCCGTTCCAGTGCTCCATCTGCCAGAAGACCTTCACGCACATCGGCAGTCTcaatacacacatacgcatcCACAGCGGCGAAAAGCCGTACAAATGTGAACTCTGCCCCAAGGCCTTCACCCAGTCCAGCAGCCTGATGGTCCACATGCGATCCCATGCGGTGCGCAAGCCACATCAGTGTCTCCAGTGCGATAAGGGTTTTATCAATTACAgttcgctgctgttgcaccaGAAATCGCATGCGGCGCCCGTCGAGAGTTTTGTGTGTCCGGAGTGCGAGCGGGAGTTCAAGGCGGAGGCGCTGCTCGACGAACACATGCGCATGCATACCCAGGAGCTGGTGTATCAGTGCGCCATTTGTCGGCAGGCGTTCCGCGCCAGCTCGGAGCTGGTGCAGCACATGAAGTGTCACATGGGCGAGAAGCCATTTACCTGTTCCCTCTGCGATCGCTCGTTCACGCAATCCGGCAGCCTTAACATCCATATGCGCATCCATACTGGCGAGAAGCCCTTTCAGTGCAAGCTGTGCGACAAGTGCTTCACCCAAGCGTCCAGTTTGAGTGTCCACATGAAGATCCATGCGGGCGAGAAGCCATTCCCGTGCTACATCTGCGGCAAGGCCTACAGCCAGCAGGCCTATCTCAACAAACACATTCAGGCGCATGCCATGGATGCGACACCACCACCAGTGCTGCGACAAGCGGCATCCCTTCCAACTCTTCCACCTGCCCCTCCTGCTCCGTGTCCTCCATTTACTACACCCGTCATCAATGCCGCTCAGAAGGAGACGCTCGTGTGCATTGTGTGCGGTGCCCTGCATGCGGATGCCACTGCTTTGGCGTTGCATGTGACGCGGGAGCACACAGCGCTGCTGGACAACATAAAGCAGGCAACAATGCCAGCAGTTCCCAATGCGTCGATGGCGGGCAAATGCAGCGCGGTGGAGCGACAAGCACAGCAGCAGGCGTATATGCAGCGGGTGCAATCGATGCTGCAGCAAAtgaatcaacaacaacagcaaatgccaGCCATGGACTCTGCCggcgaggatgaggaggaacTGGACGACGATGAGCTGGACGATGGGGATGATGATGTGGAGCCCAGCGAGCAGATCGAGGCGCAGAAATTGCAAACTGATGgcaataatgatgatgatgatgacgacgatgatgaggacgatgaagatgaagacgacgacgaagacgatGACGAAGAGATCGATGATGAGAATGTTGACGACGACATTGAGGAAGACGATGTTgttgatgaagatgatgatatTGTTGAagatgttgttgatgatgatgatgatgatgatgatgatgatgaagacgACGTGGGACAGCAGCTAGTTACAGATGCGGATATGTATTACGATATGCCCGGTGATTTTGCCGACATGGAAGTGGGCTGCGAGGAGGAGGTGTGCGCCGATTTTATTGAGAACGACGATTATGCTGCCGAGGAGGAGGTCTACAGCGAGGACATCTAA
Protein Sequence
MAVQLKNAYHHLPLTITPILCQPLLTPSPTPMPLKAEPPDLTFHCMCCAEYFVHPLALYQHMNNRHPNETTPQQQELQQHQQLLEEQQLADDDSTDYSWIFEPVCELEVAADAMASRSDEESDSNTEDGAAEEGSDADSDNDDSDSSSSNSSNSSSSSSSSSTTTNTTSNGHNSNSNTQLSLDNGAYVEVTSTQPMRTLLPNVYQLPTADPRESTSIILLRPTLSITPVTAPTAPAFAPLSVLQPTAAALATQLLPPTLHMESPMIKRRRGRRSKANVVTDSHCAAAAAVAQLGANGQKCFQCTHCEASFPNAGDLSKHVRSHISNKPFQCSICQKTFTHIGSLNTHIRIHSGEKPYKCELCPKAFTQSSSLMVHMRSHAVRKPHQCLQCDKGFINYSSLLLHQKSHAAPVESFVCPECEREFKAEALLDEHMRMHTQELVYQCAICRQAFRASSELVQHMKCHMGEKPFTCSLCDRSFTQSGSLNIHMRIHTGEKPFQCKLCDKCFTQASSLSVHMKIHAGEKPFPCYICGKAYSQQAYLNKHIQAHAMDATPPPVLRQAASLPTLPPAPPAPCPPFTTPVINAAQKETLVCIVCGALHADATALALHVTREHTALLDNIKQATMPAVPNASMAGKCSAVERQAQQQAYMQRVQSMLQQMNQQQQQMPAMDSAGEDEEELDDDELDDGDDDVEPSEQIEAQKLQTDGNNDDDDDDDDEDDEDEDDDEDDDEEIDDENVDDDIEEDDVVDEDDDIVEDVVDDDDDDDDDDEDDVGQQLVTDADMYYDMPGDFADMEVGCEEEVCADFIENDDYAAEEEVYSEDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00500455;
90% Identity
iTF_00511424; iTF_00543885; iTF_00500455; iTF_00499016; iTF_00552451;
80% Identity
-