Dlit011316.1
Basic Information
- Insect
- Drosophila littoralis
- Gene Symbol
- hang
- Assembly
- GCA_018903485.1
- Location
- JAEIGF010000591.1:13997286-14008234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.19 12 6.4 1.0 3 23 261 282 260 282 0.93 2 14 0.54 34 5.0 3.2 3 22 389 408 387 408 0.89 3 14 0.0004 0.025 14.8 3.3 1 22 489 510 489 512 0.90 4 14 0.046 2.9 8.3 0.1 2 21 524 543 523 544 0.93 5 14 0.00047 0.029 14.6 0.2 2 23 670 692 669 692 0.95 6 14 0.0013 0.084 13.2 0.1 1 23 700 723 700 723 0.96 7 14 0.0032 0.2 12.0 0.1 5 23 812 830 811 830 0.97 8 14 0.00019 0.012 15.8 2.9 2 23 946 968 945 968 0.97 9 14 0.015 0.94 9.9 0.2 2 23 977 999 976 999 0.95 10 14 0.0008 0.05 13.9 0.1 1 23 1012 1035 1012 1035 0.97 11 14 8.4e-05 0.0052 17.0 1.1 1 23 1074 1096 1074 1096 0.99 12 14 0.046 2.9 8.3 0.4 2 19 1126 1143 1126 1144 0.94 13 14 4.8e-05 0.003 17.7 0.4 3 23 1243 1263 1242 1263 0.98 14 14 0.0034 0.21 11.9 0.1 1 23 1298 1320 1298 1320 0.97
Sequence Information
- Coding Sequence
- ATGGTTGCCTGCTGCTCGAGTTCGAAACTCAGAACAGCACAGCACAGCTCGGCGCGACGCGACGCAACGACTCTCTGGACTGCGCCCCCGGCAACGACATCATCATCTACGTCGGCGTCGTCGTCGTCGGCACGTTGCTGCTGCGTGTGCTTGATCACGCCGCTGGATCGTCTATCGCTGCATATTTGCCATGCCTGCATCAGCTATTTGAACTCTTGGCAGAGCTTCAAGAATCGCTGCCTCAGCTCACAGTCCAAGCAGCGGCAATGGCTGGACACCGATAAAAGCAAGCAGCAGACACTTTTAGGATATTTGGACTTGAACAAAACGGAGAATGGCAGCTCCGTTGAACAGCAGCACGAAACGAACATCGATTCGGCGACAGTTGCAGCTGAAAAGGCGTCCGCCAACATATTGGATGGCATACCCTCGCTGAAGAAGCGCAAATCAATATTAAAAGAAAAAGAAAATGCCCCAATATTGCACGTTGAACTTATCGACTGTTTTCGTTTACAGCCGCTGCCTGCCGTGCCCATCAAGGATGAGCCCATCGACGACACGGACGATGATTTCCAAATGAAGTGCATAGACGAATCCGATGATATGATGGATCCAACAATGTTCCTAGAGCGCTCCGAGCACGAGGGCGATGTGCCACTAATGACCTCCGACTATGATTACACGGCGCAGCATGGCGTGACGGCGGTTGTGGCGGCGGCATCGCTGCCCGCCAGCGCGGTTGCGAATGTGGCCGCCGCTGGCGACTCCAAGGTGGCCAGCTGCCGTGCCTGCAGTCTACAGTTCTCGACGCGCGCGAATGCGCGACGCCACGAGCGCAATCTCCATCCGAATCTGTTCCAATTGTCGACAGACTCGCCAAATAATACGCCCATCACAAAACCGACGCCGGCATTGGCAGCCGCGCTAGAGATACAGCGTGCAGCTGCCGCGGCAGCGGCCACCGCGGAGGCAACCAAAGCTGCCGCCGGTGGCAACATATCAGCGCAAAAGTATCGCCAGGTGGTCATGAACACGTTCATCAAATGCGAGAACGGCGGCTTCGACTACGACAATCCGGAACAGTATCAGCAGCTGCTCACCCGCGACAAGGTTGAGTTTATTCAGGAGAACAACGAGTTTCTGGAGCAGTACCAGACGATGACCTGCCGCTGCTGCAACAAATACTTTAACACATACAAGAACTTTATGGCGCACGTACGCAAAAAGTATCCCCTGCTGCCGCGCAATTTATGCTTCAACTGCCTCAAGATGAACGATTCCAAGGCACTGTTCATATCGCATCTGAAGAAGCGCAACTGCATCAATTTGTATCGCGTTCTCAACGCTCTCCGTATCAAGCAGCCAAACTTCTCTCATGCCACCGCATCCGGAGCGGCTGTCTCAACCGATATGAGTGGTGTTCCAGAGAAGCTACGCGCCAAGGAGCTGCTGGTGAACAAACTGTATGAGTGCAAGCTCTGCCCAAAGGGCTTTCGCACCAAGCACGAGTTCCGCACCCATGTGTACGACAAGCATGCGGATGTACAGCGCAAGGATAACAATTCGATACAGTGCAGCTTCTGTGGACTGGACTTTGCCGATCCGGTAGATCGTCGCCGTCACTACAACAACATGGACTGCATTGTGCGGCTACGCTGCATGACCTGCGATGCCAAGCTGGAGACGCATCAGCGCTTCCTCGACCATGTCTATCAGGATCATTTGGGCGGCGTCAGCAGCGACAATGCCTCCACCGTGAACAGCGGCATGGATCATTCGCCCGGCAAGCGTAGCCTGCTGGGCGCCCTTGGCATTGGTGTCAGTCAATCATCCAATGATGAGTCGCGCAGCAGCAGCCACAACAACAACAATGCTGTGGAAACGCCGCTCACCTCAACACCGAAGCCGGCTGCATCGGGAACTGCAGCTGCGGCGGCGACCAGTGGCGGCTCGACATCTGGCAATCGGGATGCACCCAAATCGCAGTATTTTTCCCGCATGCCGCAGGTGTGCCCCATTTGTGGCCAGCAGTATAATAACTACAACAACGTGCTGCGGCACATGGAGTCAAAGCATCCAAATAAACTGCCCGAAACGTACAAATGTGTACGCTGCGGCCTTGGCTATCCGCGAATCTCATATCTGCGCGAGCACATGATTAATGTGCATGGCGTGGACAAGAATCGGCATTCCGGAGGCTTTGAATATATTGTGAATGCCGATGCTGTTAAATTGGCGGACGGCAGCACGCCCAATGTCTACACCGGACGCTATGATTATGTGATGAAGGATCTGATGTCAATAACAAATGGTGGGACACTCGATGATGAGGAGGAGGAGAGCGGCAGCGTTGCCAAAAAGATGCGCCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATCTGTAATGCGGTGTTCAGCAACAACATTGGGCTATCCAATCACATGCGCTCGCATTATACCGCCTCCACGACGACGAGCGCAGCGCTGGCGGCGGCCAATCGCATGACGCCAAAGTCGCTGACAATTACCGCAACGCCGCCGCTGGAAACGGCTGCCGCATCGTCCACAAGCATTGCGGTGTCAGGGGGGGCGGCGGCGGCGGCAACAGCAGCAGCAACGCCCGCCACAAGCACAACTGCATCTGCGAGTGCAACTACAACAACAAGTACAACAGCTGCCGCAACCGCTGCCGCCGCGTCCGGCAGTTTGCCGCCAGCGATGGCACATCAAACGCCACAGGAGCAGGCGGTATTCCGACGTAGCCTGGACCAGGCAGCCGATCGTCGCTTTCGGCGCATGCGCTGTCGCATCTGCCAGCGCAGATTTAGCTCGAAGAAATCGTATCGCTACCACATGCTGACAGACCATCAGGTGCAGAACGTGCAGTTCATCAAGTGCAAGTTGTGCAATGCGGAGTTCGCCTACGAGAAGGGCCTCAAGGTGCATCTCTTCAAGGTGCACGGACGGGCCATTAAGGACGAGATGATTGTGAAGCAGTTCGAGTGCGATATCTGCTCCATTGTCTACAGCTCGGAGCTGGAGCTGCAGCAGCACAAGCGCAGCGTGCACAAGTCCCAGCTGGGCGCCAACGATGCGGCCAAATCGAAATCGTCAGCCGCCGCCTCAGCTGCTGACCTGGCCGAGACGTCCGGCACGGCTGTGCCAGCCCTGCCCCTCTACTGGTACCAGTGCAAGTACTGTCCATCCAATTTCAACACCAACAAAAAACTGGCCATACACATAAACTCGCACGACGAGTTCGACTCGAATGATTACTCGTGCAAGGACTGCGGCAATGTGCATCGCTATAAGAAGCATCCGCAGGTGCCGGATCCCGCTGAGTGTACGCTGTGCCGCAAGATGTTCTTTGACCGCCAGATGCTGGAGAATCACACGCCCACCTGCAATCGGAAGCCCATCACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCACATTGAAGATACGCATACCGGAGGTGGCATGCACCATTTGCGGTGCAAGGTTCACCGATCAGGAGATGTTCAGCAAGCATATACAGAAACATGAACAGGATCTGTATGTGGATAATCCATTGGCGGCCATGTTCGATGATGGACCAGCGGACGCTGGCCAATTTCAGGTGGAGCGCCAGAACGAGAATGGGGAATATGCGTGCGATCTGTGCGCCAAGACGTTCCCCCAGGTGATAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGGTGAGCTTTTTCGGCTTGTGCAGCGAGGTGAATCTCTCTTGTGTGAATGGATCCCAAGCCGTGCGGATCCATTCGTGA
- Protein Sequence
- MVACCSSSKLRTAQHSSARRDATTLWTAPPATTSSSTSASSSSARCCCVCLITPLDRLSLHICHACISYLNSWQSFKNRCLSSQSKQRQWLDTDKSKQQTLLGYLDLNKTENGSSVEQQHETNIDSATVAAEKASANILDGIPSLKKRKSILKEKENAPILHVELIDCFRLQPLPAVPIKDEPIDDTDDDFQMKCIDESDDMMDPTMFLERSEHEGDVPLMTSDYDYTAQHGVTAVVAAASLPASAVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSPNNTPITKPTPALAAALEIQRAAAAAAATAEATKAAAGGNISAQKYRQVVMNTFIKCENGGFDYDNPEQYQQLLTRDKVEFIQENNEFLEQYQTMTCRCCNKYFNTYKNFMAHVRKKYPLLPRNLCFNCLKMNDSKALFISHLKKRNCINLYRVLNALRIKQPNFSHATASGAAVSTDMSGVPEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGLDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGVSSDNASTVNSGMDHSPGKRSLLGALGIGVSQSSNDESRSSSHNNNNAVETPLTSTPKPAASGTAAAAATSGGSTSGNRDAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINVHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYTGRYDYVMKDLMSITNGGTLDDEEEESGSVAKKMRLXXXXXXXXXXXXXXXXXXXXLICNAVFSNNIGLSNHMRSHYTASTTTSAALAAANRMTPKSLTITATPPLETAAASSTSIAVSGGAAAAATAAATPATSTTASASATTTTSTTAAATAAAASGSLPPAMAHQTPQEQAVFRRSLDQAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGRAIKDEMIVKQFECDICSIVYSSELELQQHKRSVHKSQLGANDAAKSKSSAAASAADLAETSGTAVPALPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVHRYKKHPQVPDPAECTLCRKMFFDRQMLENHTPTCNRKPITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLKIRIPEVACTICGARFTDQEMFSKHIQKHEQDLYVDNPLAAMFDDGPADAGQFQVERQNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQVSFFGLCSEVNLSCVNGSQAVRIHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -