Dlit009900.1
Basic Information
- Insect
- Drosophila littoralis
- Gene Symbol
- -
- Assembly
- GCA_018903485.1
- Location
- JAEIGF010000124.1:6178031-6186332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00026 0.016 15.4 3.4 1 23 333 355 333 355 0.98 2 11 0.0012 0.078 13.3 10.5 1 23 362 384 362 384 0.96 3 11 0.00013 0.0079 16.4 6.5 1 23 390 412 390 412 0.98 4 11 0.00057 0.036 14.3 1.6 1 23 418 440 418 440 0.95 5 11 2.7e-05 0.0017 18.5 0.5 1 23 446 468 446 468 0.97 6 11 1.8e-05 0.0011 19.1 0.1 1 23 474 496 474 496 0.98 7 11 0.00015 0.0096 16.1 2.0 1 23 501 524 501 524 0.97 8 11 0.064 4 7.9 0.3 1 23 530 553 530 553 0.94 9 11 0.00021 0.013 15.7 0.1 1 23 611 633 611 633 0.98 10 11 0.019 1.2 9.6 2.7 1 23 746 768 746 768 0.95 11 11 0.0055 0.34 11.2 4.9 5 23 781 799 773 799 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTCGGCTACACTTGGGGTTTTGCAGACAACGGCAATCGTGCCGCAGAATCAGTTTTGGAGATATCGCCAAATATTAACTACACTGTCAGTGGGGAATCGATGCCCTATCTGTTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTCAGCAGCAATAAGGGCAATGTCGTTCGGCGCATGTTCGTGGTGAACGATTCCTCATTTGCGCCCGGAACACAAAGAGTAATTACCACAGGCTCCGCATCGACGGTGGTCAAAAAACAGGACTCTGGTCAACAGGTGTTGAGCATAAATTCGCTCGATAAGAACTATCTTTTGGTCGATCAGGCAACAGCGGCAGCAGCTGCGGCTGCAGCAGGTGGAGGTGATCCGGGGTCTGCTGCACATCATCATACATTGACAAATGGCAGCATTGTTGATGCCAAAACTGGACAAACGGTATTGAGCACATCGGGTGCCGCCGCTGCGGCCAAATCGCATTTTAGCTCAATTGGAGCACTGCATCTGACCCAAGAGGAGTGCAATGAGATCTTAATCAAGCGCGCCATTGCAGCCGGCCACGGCCACCATCAGACGCACACAATCACCGCTGGCGACGGAGCGCACCACCACCACCACCACCATCATTCGACGGCGCCAGGCGCGACACCAAGTAAGCATCTCAAATCTGTGTTGTGCTCGAATATCTCCTCCTTCTCCTCCTACAACTCTCCTACTGCTCTACTGCTCTACTGCTACTGCTACACTCTGGCACTGTATTGGTACTGGTATTCGGTATATTCTCTTCAAGTACAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCGCAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAATTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACCGACGCCACCATCAAAAAGGAGCGCCCGTACAGTTGTGACGAGTGCGGCAAATCCTTTCTGCTCAAACATCATTTGACAACACACGCACGCGTGCACACAGGTGGCGAACGTCCACACATTTGCACCCATTGCGGCAAAAGTTTTGCGCACAAACATTGTCTAAATACGCATCTACTGCTCCACTCGACGGATCGGCCATATCAGTGTCAGGAGTGCAAGAAGAGCTTTACGCTTAAGCATCATCTGTTGACGCATTCGCGTGTCCATAGCCGGGAGCGGCCATTTGTGTGCCAGGAGTGCGGACGTGCATTTCCCCTCAAGCGTCATCTGGTCACGCACAGTAAATTTCACGCCGGCGAACGTCCCTACGTGTGCGAGGAATGCGGTGAGAGTTTCGCACAGGAGAATCACCTGATTATGCACTCGCGCTTTCATGGTTCATTGAATCCATTTGTTTGTGCTGATTGCGGTGCCTCGTTTCCACGCAAATTTCAACTGGTTAATCACGGACGCATACACGGCAAGATACCACACTCGTGCACAGTTTGCGGCAAAGAATTTCTACAGAAGCGCACCCTAGTTTCCCACATGAGACGCGTACACACCGGCGAGCAGGCGCATCCCTGCGTCAGCTGCGGCGAAGGTTTCCTCACCAAGGCGGAACTGCATCAGCATGTCCGCGCGGCGCACAACGGCGTCAATCCCAATACGAGCAGCGCCACCATTATAGCCAATCAACAGATACAGCAGCCGCATCATCATCCAGGGCATCCGCAGACGATCACCGTTGTCAGCAATCCGGCTAACTCAACGCTGCTCACCGTCTCCACAACCGATGCCAATGGCGTTGCGCGTCCACAATTCGTTTGCCGCGAATGCGGCAGCGCGTTTAACAGCCGCGAAGCGCTCGCCTTGCACTTGCGACTGCACACGGGCGACAAGAGCCTTATGACCGATCTGTGCGCTTTGACAGCAGCGCTGCCCGGTCACTTTTTGAGCACGGCGAGCCTCAATCCGGGCACTGTGGTAACGGCCAATCCGAATCTGGTGGGCCAGAGTCCGGTGCCGGTGCAAATCATATCATCCACCGGTCAGGTGATGTCGCAGACAACGCTGGTGCAGGCCGCCAATTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGCCAAAATCGCATTTCTGCGCCAGCTGCGGCAAGGGATTCGCCGCCAAGCACGGCCTCATGCAGCACAATCGACGACATCCAAACGGCGGCTGCACGGTGCGCACCCATGTCTGCGAGTGTGGAAAGGCATTCTTCCAAAAGAACCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCGCAGCAACAGGAGGCCGACGTCCAGCAACAGCAGCAACAACAACAACAACAACAAGCGGCCGCTGCGGCCGCCGCCGCGGGACAACAATCTACCCAGGTGGAGGTGCAAATAATGCCCGGAGGCCATGCCAAGGTCATCAAATACGAGATCTGTCGAAATGTGCTCCAGGAGGAGCAGGCGGGGCAGCAGCAGCAACAGCAGCAGGCGTCCATGCATGCTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTAA
- Protein Sequence
- MCAAQSNPPPFGYTWGFADNGNRAAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGALSSNKGNVVRRMFVVNDSSFAPGTQRVITTGSASTVVKKQDSGQQVLSINSLDKNYLLVDQATAAAAAAAAGGGDPGSAAHHHTLTNGSIVDAKTGQTVLSTSGAAAAAKSHFSSIGALHLTQEECNEILIKRAIAAGHGHHQTHTITAGDGAHHHHHHHHSTAPGATPSKHLKSVLCSNISSFSSYNSPTALLLYCYCYTLALYWYWYSVYSLQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCADCGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQIQQPHHHPGHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEADVQQQQQQQQQQQAAAAAAAAGQQSTQVEVQIMPGGHAKVIKYEICRNVLQEEQAGQQQQQQQASMHAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01556276;
- 90% Identity
- -
- 80% Identity
- -