Dlim003193.1
Basic Information
- Insect
- Drosophila limbata
- Gene Symbol
- -
- Assembly
- GCA_963924055.1
- Location
- CAWUOW010000205.1:234893-245843[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.004 0.41 11.8 0.3 3 23 884 904 882 904 0.96 2 12 0.087 8.8 7.6 1.5 2 23 915 936 914 936 0.96 3 12 0.00096 0.097 13.8 1.2 1 22 966 987 966 990 0.90 4 12 0.15 16 6.8 1.3 3 21 997 1015 997 1016 0.95 5 12 0.09 9.1 7.6 2.0 1 23 1035 1060 1035 1060 0.95 6 12 0.047 4.8 8.5 1.4 2 23 1076 1098 1075 1098 0.93 7 12 0.0041 0.41 11.8 0.5 3 23 1105 1126 1103 1126 0.93 8 12 0.026 2.6 9.3 0.8 2 23 1130 1151 1129 1151 0.97 9 12 0.00046 0.047 14.8 1.7 3 23 1159 1179 1157 1179 0.97 10 12 0.035 3.6 8.9 0.6 1 23 1183 1206 1183 1206 0.93 11 12 2.4e-05 0.0024 18.8 2.2 1 23 1212 1235 1212 1235 0.97 12 12 0.0044 0.44 11.7 0.2 5 23 1248 1267 1240 1267 0.90
Sequence Information
- Coding Sequence
- ATGACGTTCACACTGAAAGATATTAAAGAATCATTGACAGAGTTCGATGCAAGTGAGCAGAAAGATGTAAATGAGTGGCTTACAGATTTTGAGAATACAGCAGTGACCGTGCAGTGGAATGACTTGCAAAAGTTTATCTATGGACGGCAACTGTTAAAAGGAGCTGCAAAGCTTTTTGTGAATAGCCAAGACGGTCTTACTAATTGGACTACGCTGAAAGAGGCGTTATTAGAggaatttacaataaaattgtcAGCTAAACAAGTGCACAAGCAGCTCGAGGGTAGAAAGAAGAAGTCAGGGGAATCCTTAGTGGAGTATTTCTATCACATGAAGAACATAGCAAAGAAGGCCGGTGTAGATGAAGAGAGTCTCGTAGAATATATAATTGAGGGTATTCCAgacacaaagcaaaacaaaagcgtTTTATACCAGGCCACAGATCTGAAAGAGCTCCGTGATAAAATGATTATCTATGAAAAAATATCGATCAATACAGAGTCCAGCAAGAAGGTTAAAGCTGAGAAAGATGAGACAAAAACTGAGAAAGAGGGCATTCGTTGCTACAAGTGTGGAGGTAAAAACCATTTTGCCAGAAATTGCGGAGAGGAAGAAGTCAAGTGCTTTAAATGCAATCAGCTAGGTCATAAGGCTAATCAGTGTACATCAAGAGAGCAAAAGAAAGAGAATGTGCAGTCACAGCAGCTAACGCAGAAAACTTCAAATAGAGTGTTCAAGGAAGTTCGCATTGGCATTAAATCCATATCGGCACTATTCGATTCTGGCAGTGACATTTGCACTATAAGTGAGAGCACATACAAAGAGCTGTATCCAGTAGCATTAAAACGCGACATAAGAGAATTGAGAGGCATAGGAAACAAGACGATTTGCACACTTGGATCTTTTAAGATTGACACAGAGCTAGATGGCATCCCACTTGAGTTAAGCTTTCACGTGGTCCGAGACAGAGATACTCTATACAGTTGCATTATTGGCTGCGATGTTTTCGCTTATGTGAGTGTGACCATCAGTAGCAATGGGGCAGTTTTCCATAGAAATGAGAAATCAGTGGGAGAAAAGAATGAAGGTCAGGCAGCCTCAGATCATCAAATCTGTAGTCGCGATTTAATTTCGATAGTTCAAGAAAACCCAATGTTTGATGTACAGAAGGAATTATCTCAAATGATGATAACGACGATATGTGAGAAAGGTAAAGACGAGATAGATTTCGTTAAAGAGTATAATCCAAGGAAGCCAGAAAAGTATCCAGCTGAAATGAAGCGCACTCTTAAAGATGAAATACCCGTGCATCAGAGACCCAGACGTTTAACGTACAGTGACCAAGAGAAGGTGAACGAGCAAATAGAGCAGTGCCTAAGAGATGGAATCATTCGTCATAATGTTTCTGAACATGGTGCTTTCCCTATTGTTATGATAGCCAAGAAAGACGAAAAGAAGAGACTGTGCTATGATAGCAGGCAGCCGAATCAGACGAGACTTACcggatttaaaatgaaaacaggATATGATAAGAAGGCAAGCCGAATACCGCGAAACGTTCGCTGGGGAACTGAAACGGCGTCGTGTAAAATGGAGCGCCGAGGATCCTGCTACGTGTGGGACTACTGTGAAAAGCTGGCCAAGAACAGAGTTCTCTGCAAGCTATGCAATAGAAAAATGCTATTCTATGGGACGGCCAACGTGATAACGCACCTGCAGCGCTGGCACAACATTACGAAACGACcaGGCACCAGCAATCTGCAAAGCCATCTGCATCGCATACACAACATTATATGGAGCGTTCTGGATGCTTTTGTGCCAGTCAAAGAAGAAACAGATCCTTCCAGCGAGGATTcctttttcgatttttgtgcagcagccgcagcagcagaatACGCTGCatcaagagcagcagcaacaacaaaaacaacaacgacaacagcatcATTAATGAGAACAACGACGCCACCGCGACTTCAACTTTTAACAACGAGAACAGCAGCGTCCTCAACGACATCAGCACAAATGCCACCGCGGAGTCCATTGATCAAGATCAAGATCAACAGCTACCACAACAATGCGTcaggggcaacaacaacggagAGTATTGAGTATGCCTCACTGGCAACAACAGATCATCTGGGCACAACAACACTGACGGTGCATTTTGTCGAGCAGGAGCAGACCGAGAATTTTGCCGTTAACAGCGGCTACATACCAGAAACCATCGCGATAGCCTTGAAACTGGGCAATCTGAGTCCGGAGTTTGAGGAAAAGCTGGTGAGCATGCACAAGAAGCAGGAGCAACAGAATTCCAACAATTTAGTCGAATGGACGGCAACAGTAAATAGATCAAACTCTTCGGTTGATGGCGCCAGCACATCGTCACGTCGACGCACTGCATCACGTCatcatcacaacaacaacgacgatgATAAATGGAAACTGCGCACGCCAACTAAGAGTCAATCGAGCAACTACAGCGGTAGTCACTTCAATAGCACAAAATCTCACTTTAACTTTCACAATCAATTCCATTTGGAGAGGCATCGACCAAGCGCCTGTTTTGTGTGCAACTATGCGGACACCAACATCTATGAGCTGTTCCAGCATTTGCACTATTCACACGAACCCGAAGGCACGCTCTTCTGTGATCTCTGTGATCGCTATTTTCGAGATCCTGCCGTGCTCACGGATCACAATAAAACCCACTCGAATCGCTCCACGCATGGATCCATCATTAGCTGTGAGCTGTGCTGTCGAGAGTTTGCCACGGAGGCGTCCTACAACATGCACATGAAGAAGCATCTTATCATTGAGCGTGAGACTCACGAGGAGAATGTGGATTACGCTTGCTTTGGCGTTGAAGTCTATGTGGAACTTTTAAGGGATGCCTATGTCTGTGAATATTGCTCAGCTTACTTTAAGCATAAGAGAGATTTGCGGGCTCATCGCGATTCGGGCATACACAAGGATGGTTTCTGTTGGTGTCAGCAGTGTGGCAAGGAGTTTAACGACATGAAAATCTATCGTCATCATATGCGCAACTTTCAGCAACAACGAGCGGATGTTGAGCATCGCAAGCTGGAGATTTGTCTCTTCTTTATGTGCGATTATAAAAATTGCTTTGAGTCGTACGTCAATTGGAATTCCTTGTACACGCACAAGAAACGCACTCACAATGTGGTCGTCAAGGAGATGTCGACGCAAAAGGTCAACGAATGGATCTGTCAGTTCTGTCAGAAGATTTGTCGCTCCAAAATGTCGCTATCAGTGCATGTGGCACGCAGTCACAACAACAATAATGTAATTTGTCCGATCTGCAAGGCGTCTTATAAAAATGACGAAACGTTGAAGAAGCATCACGAGTACTGGCATGAGCCCATGAAGTGTGCGTTATGCCTGAAAATGGTCAAGAATCGTCGAAACTATGACACACACATGAATGTGCATTCGAATAATAAGCGTTATGGCTGCAACATCTGCAAGAAGGGATTCTATCACAGGAGCGAAATGGAGGCACATAAGCGATTGCATTCACAATTGTATAGCTGCGGACAGTGCAGCTTCACCACGAGGAACAAGCAATCCTTGTCGGTTCATGTGCTTGGCCAGCATTACAAAAGTTTCGCTTTTGAGTGCACTGTCtgcaataaacattttggacGTCGTCAGGGCTTAACCAATCATATGCAACGTGTCCACGGCTCCAAGAATACGTGTCGTGATTACTATGATGGTGGCTGcagcaaaacatttaacacaATCGCACAATTAAACGTGCACGTGCGTAAGGTACATGATGACAGCATAGCCCTCCCAGAGGAGGacgagcaggaggaggaggatcaGGATGAGCAGCTGGATCACGAAGAACATgagaaaagaagaagaaaagaagCCGGagctaattaa
- Protein Sequence
- MTFTLKDIKESLTEFDASEQKDVNEWLTDFENTAVTVQWNDLQKFIYGRQLLKGAAKLFVNSQDGLTNWTTLKEALLEEFTIKLSAKQVHKQLEGRKKKSGESLVEYFYHMKNIAKKAGVDEESLVEYIIEGIPDTKQNKSVLYQATDLKELRDKMIIYEKISINTESSKKVKAEKDETKTEKEGIRCYKCGGKNHFARNCGEEEVKCFKCNQLGHKANQCTSREQKKENVQSQQLTQKTSNRVFKEVRIGIKSISALFDSGSDICTISESTYKELYPVALKRDIRELRGIGNKTICTLGSFKIDTELDGIPLELSFHVVRDRDTLYSCIIGCDVFAYVSVTISSNGAVFHRNEKSVGEKNEGQAASDHQICSRDLISIVQENPMFDVQKELSQMMITTICEKGKDEIDFVKEYNPRKPEKYPAEMKRTLKDEIPVHQRPRRLTYSDQEKVNEQIEQCLRDGIIRHNVSEHGAFPIVMIAKKDEKKRLCYDSRQPNQTRLTGFKMKTGYDKKASRIPRNVRWGTETASCKMERRGSCYVWDYCEKLAKNRVLCKLCNRKMLFYGTANVITHLQRWHNITKRPGTSNLQSHLHRIHNIIWSVLDAFVPVKEETDPSSEDSFFDFCAAAAAAEYAASRAAATTKTTTTTASLMRTTTPPRLQLLTTRTAASSTTSAQMPPRSPLIKIKINSYHNNASGATTTESIEYASLATTDHLGTTTLTVHFVEQEQTENFAVNSGYIPETIAIALKLGNLSPEFEEKLVSMHKKQEQQNSNNLVEWTATVNRSNSSVDGASTSSRRRTASRHHHNNNDDDKWKLRTPTKSQSSNYSGSHFNSTKSHFNFHNQFHLERHRPSACFVCNYADTNIYELFQHLHYSHEPEGTLFCDLCDRYFRDPAVLTDHNKTHSNRSTHGSIISCELCCREFATEASYNMHMKKHLIIERETHEENVDYACFGVEVYVELLRDAYVCEYCSAYFKHKRDLRAHRDSGIHKDGFCWCQQCGKEFNDMKIYRHHMRNFQQQRADVEHRKLEICLFFMCDYKNCFESYVNWNSLYTHKKRTHNVVVKEMSTQKVNEWICQFCQKICRSKMSLSVHVARSHNNNNVICPICKASYKNDETLKKHHEYWHEPMKCALCLKMVKNRRNYDTHMNVHSNNKRYGCNICKKGFYHRSEMEAHKRLHSQLYSCGQCSFTTRNKQSLSVHVLGQHYKSFAFECTVCNKHFGRRQGLTNHMQRVHGSKNTCRDYYDGGCSKTFNTIAQLNVHVRKVHDDSIALPEEDEQEEEDQDEQLDHEEHEKRRRKEAGAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -