Dlim010301.1
Basic Information
- Insect
- Drosophila limbata
- Gene Symbol
- -
- Assembly
- GCA_963924055.1
- Location
- OZ001351.1:30690948-30697432[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.2 20 6.5 0.1 1 13 381 393 381 401 0.80 2 8 0.0013 0.13 13.4 1.3 1 23 949 972 949 972 0.93 3 8 0.0029 0.29 12.3 3.0 1 23 999 1021 999 1021 0.97 4 8 2.6e-05 0.0026 18.7 2.0 1 23 1027 1049 1027 1049 0.96 5 8 5.2e-05 0.0052 17.8 0.9 1 23 1055 1077 1055 1077 0.98 6 8 0.0013 0.13 13.4 1.4 1 23 1083 1105 1083 1105 0.97 7 8 0.072 7.3 7.9 0.0 2 23 1112 1133 1111 1133 0.96 8 8 0.00072 0.073 14.2 0.7 1 21 1139 1159 1139 1160 0.95
Sequence Information
- Coding Sequence
- atgacagcaacaacaattgaggCAGCTCGAGAGAAATGTGGCACCGTGTACACCTGGAATTGTGCGGGCGAACTTTATGGCATCGAGTGTGAACTGTGCGAGGAGCGTCCCTTTTGCCCCTTAAATGAATTCGCCGAGCATATGGAATTGTGGCACTCCGATTggacacaacagcaacaacagccgccACCGGAGGATGCGGAGGAGTTGATGCAAGAGGTTCTGGCCGAGGAACAGTCGAACGGCGGCGGGGAGGTCAATGAACTCAAGCAGCAGTTGGTTCAAGAGCTGAATGCTCCCCTTGACACGCACTCGACAACGAAGACGACGAATGATGATCATCAGCATTGTGATCATCATGATCAGCataatgatcatcatcatcagcataatgatcatcatcatcatcatgatcaaCATCATCAGCTGCTTGTGGAGCAACGGATTCAATTGGGAAACAATAGTTGCCCAGCCACAGTGGACAACCCGCAGAAGCTGACAACGGAGCACGTCCAGCATTTAATTGAGCTTTACCGGAGTGAGACGCGTCTCTGGAACCAGACACATCCGGAGTTCCGCAACATGGAGCTGGGCCGTGAATCATGGCGACAAATTACGAGTGCTTGGAGCGCACATTGCGGTCGCCTTTTCAGTGTGACGGATGTGCGGATACGAATCTCAACGCTGTGCCAGCGATTCCTGAAGCAACGCGAACGTCTGGACGCCGAGGGAGAACTGGACGAGGGCGCCAAATTCGTGCACTACGATCAGCTGAGATTCCTGTGCGAGCAGCAGTCGTTGCTGAAGCGTCGGGAGCACTTTGCCCGCGAGAATCGCAAGCTGCTGGAGATCTATGAGCATTACCCCATTCTCTGGCACAATGCCCACAAGCGTCTGCGCTGCGTGGAGACGATGAGGAGACGCCACGAGGCCCATCGTGGCCTCCAGTTGGCGCTGAGAATGTGCGGCATTAAGTTATCCGGTCTGGCCATTCAGCGTCGTCTTCAGTCGCTGAGGAAGCGTTATCGCCTGGAGAAGATTCGTTACTTGCACAGCGTCGTGGAGGGCAAGCAATCGGAGTTTGTTGCCACCTTCGAGCATTATGCGGAGATGGAGTTTCTCCACAAGCATATTGATCCGTATGTGTGTGCCGTGTGCGGCAAGATCTTTGAGCATCTGGTGGGGCATCAGGCGCATGTCCAGGGCAGCTGCGAGGCTCAAAGTGTGCTCAAGGAGCACAAGGAGCTGGCGGAGTCGGAGGCGACCGTGGGGGAGCTAATGGTGCAGCTGGAAATGGAGGGAATGGAGCAGAATCCGCtggaggaggagcagcagAGGTTGGAAACCAAGCAGAAGCTGATAGATACGCAAGATCTGGGGGAGAAGCACATGGAGACTGAGatggagcagcagctgctggagGAGCAGTTGGCGGAGGAGGATCACGTCAAGATGGATCAGCTCGAGAGGAATCTGCTCAAAGGGTACAACAGACAGGCGCATCAGCTGGAGAGAAATCTCCTCCAAGGTGATCACATTGAGGAGGATCAGCTCGAGGGGAGTCTCCCCATTGGGGAACATATCCAGGAGGATCAACTTGAAAGAAATCTCCTCGGAAAGCATCACCTCCAGGAAGATCAGCTCGAGTGGAAACTCGTAGAAGGGGATCACTGCCAGAGGAATCAACTGGAGAGGAATATAGTGGAAGTAGATCACCTCCAGAAGGATCAGCTTGGGAGGAATCTCCTCCAAAGAGATCACTTCCAAGAGCATCAGCTCGAGAGGAATCTCCTCCAAGGGGATCACCTCCAGAAGGATTACCTCCAGAAGGATCACCTCCACGAAGATCACATCCAGGAGTATCACATCCAAGAGGATCACCTCCGGAAGGATCACCTCCAGGAAGATCACTTTCCGAAAGATCACTTTCAGAAAGAATACCTCCAGAAGGATCACCTCCAGGAAGATCACCTGCAGAAGCATCCCGACGAGCTGCTGCTCCTAGAGCAGGAGACGACAACGCCACTGCACAATCTGCCCTCAGCCAGTGTTGCCGCCAATCCGGAGGCGCAGCTGCCCCTGGGTGAAGAAGACGCACCACACTCCAACACACAACGCACCGAGGAATCCTCCGAGGACAGTGTGCCCTCCACGAACACGACGGAGCAACAAGCCAACAAGTTGCGTGTGCGTCTGAGTTTGCAGCAAACGAATAAGCTGATTGAACTGTATCAATCGCATCCCAATCTCTGGGATCCCAATCATTTGGACTATCATGCGAGGAAGCAGCGTCGTCAGTCCTGGCACAATATTGCCAAAGAGTTGAATGATTGCTCCACGGGAAGTAATCGCTACAGCTGGCAAATGTTGCATAggaaactcacagattacaccAAATATTATCGGAGGGAAAGGCAACGAGAAGCTCTCGCCGAGGAGGGCGAGGGTGAAGGAACTCGCTGGAGTTTCTACGATGCCTTTAGCTTTCTGGACGACGTGCTGCCCATCAGTTGTGTGCTCCAGAAGTCGCTGCAGCAAAGGGACAGCAACTTGAAGATCATACAAGTGTATCAGAGCTACGAGCAATTGTGGTGCACTAATCATCCGGATTACACCAAGCGCaagcagcgacaacgacaattgGAATCGTTGTGCACACGCCTCCAGGAGGAATGCAATCTGCAGATTACTGTGGAGCGTCTCAAGAATCGTTTGATCGAGTTCCGTTGTCAGTATCGTCAGTGCAAGGAATCAAGGCAGGCGGCTTTGAAGCTGGGCGAGATGTGGCAACCCACCTACGAGTATTATCAGCAGCTGCAATTTCTGGAGCTGCATGTCTCGCCCTTCAATTGCATCTACTGTCCAGCCAGTTTCAAGCGACGCACGGATTTTCTGCGTCACCAGCGTAATGTCCACTTGGAGGAGGACGAGTTGCAGGGACATTTGCGCAAGCGACGCAGCAAACGCGGAGCAGCTGTCAGTAATCCTCTCGAGCATATTTGTCACATTTGCGCCATGAAATTCTCGCTGCGCACCAGTTTATTGGCCCATTTGAGGCGTCACCTTGGCCAAAGGACACACGCCTGCCAGGAGTGccccaaaaagtttttcaactCCACCGCATTGCGTGTCCATCAGCGAAGTCACACCAAGGAGCTGCCCTATGTGTGTGAGCATTGTGCCCGAGGCTTTGTGAATGCGAGTAAACTGAATCAGCATGTCAAGCGACATGCCGAGAAACGGGACTTTCCGTGCAGTCGCTGTGACAAGGCATTTTATACGGCCCACGAGCGGGATCGTCATCTGCGAGCCCATCTCAACATCCGGGACAAGGTGTGTCCCTACTGTGCCCGCGCCTTTGTGGTGGGCAGTGCGTATTATGCCCATCTCAATTTGCATCGTGGAGAGAAGCGTTACAGCTGCTCCAACTGTGGACAGAGATTCGCCCAGTATGCGGGTCTCTACAAGCATCGCAAACGTTGCACTGTCAACGGCAACGGCTTGAACGAGAACCGATGA
- Protein Sequence
- MTATTIEAAREKCGTVYTWNCAGELYGIECELCEERPFCPLNEFAEHMELWHSDWTQQQQQPPPEDAEELMQEVLAEEQSNGGGEVNELKQQLVQELNAPLDTHSTTKTTNDDHQHCDHHDQHNDHHHQHNDHHHHHDQHHQLLVEQRIQLGNNSCPATVDNPQKLTTEHVQHLIELYRSETRLWNQTHPEFRNMELGRESWRQITSAWSAHCGRLFSVTDVRIRISTLCQRFLKQRERLDAEGELDEGAKFVHYDQLRFLCEQQSLLKRREHFARENRKLLEIYEHYPILWHNAHKRLRCVETMRRRHEAHRGLQLALRMCGIKLSGLAIQRRLQSLRKRYRLEKIRYLHSVVEGKQSEFVATFEHYAEMEFLHKHIDPYVCAVCGKIFEHLVGHQAHVQGSCEAQSVLKEHKELAESEATVGELMVQLEMEGMEQNPLEEEQQRLETKQKLIDTQDLGEKHMETEMEQQLLEEQLAEEDHVKMDQLERNLLKGYNRQAHQLERNLLQGDHIEEDQLEGSLPIGEHIQEDQLERNLLGKHHLQEDQLEWKLVEGDHCQRNQLERNIVEVDHLQKDQLGRNLLQRDHFQEHQLERNLLQGDHLQKDYLQKDHLHEDHIQEYHIQEDHLRKDHLQEDHFPKDHFQKEYLQKDHLQEDHLQKHPDELLLLEQETTTPLHNLPSASVAANPEAQLPLGEEDAPHSNTQRTEESSEDSVPSTNTTEQQANKLRVRLSLQQTNKLIELYQSHPNLWDPNHLDYHARKQRRQSWHNIAKELNDCSTGSNRYSWQMLHRKLTDYTKYYRRERQREALAEEGEGEGTRWSFYDAFSFLDDVLPISCVLQKSLQQRDSNLKIIQVYQSYEQLWCTNHPDYTKRKQRQRQLESLCTRLQEECNLQITVERLKNRLIEFRCQYRQCKESRQAALKLGEMWQPTYEYYQQLQFLELHVSPFNCIYCPASFKRRTDFLRHQRNVHLEEDELQGHLRKRRSKRGAAVSNPLEHICHICAMKFSLRTSLLAHLRRHLGQRTHACQECPKKFFNSTALRVHQRSHTKELPYVCEHCARGFVNASKLNQHVKRHAEKRDFPCSRCDKAFYTAHERDRHLRAHLNIRDKVCPYCARAFVVGSAYYAHLNLHRGEKRYSCSNCGQRFAQYAGLYKHRKRCTVNGNGLNENR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00602087;
- 90% Identity
- -
- 80% Identity
- -