Dlim012770.1
Basic Information
- Insect
- Drosophila limbata
- Gene Symbol
- -
- Assembly
- GCA_963924055.1
- Location
- OZ001352.1:17415515-17419404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6 1.6e+02 3.6 0.7 1 20 130 149 130 151 0.75 2 12 0.011 1.1 10.5 0.6 1 23 160 182 160 182 0.94 3 12 0.00014 0.014 16.4 0.6 1 23 189 212 189 212 0.96 4 12 0.00047 0.047 14.8 1.6 2 23 220 241 219 241 0.96 5 12 0.0014 0.15 13.2 0.1 3 22 269 288 267 291 0.89 6 12 0.0018 0.18 12.9 0.8 1 23 328 351 328 351 0.96 7 12 0.022 2.2 9.5 0.7 1 22 358 379 358 379 0.97 8 12 0.00046 0.047 14.8 0.9 1 23 388 411 388 411 0.97 9 12 8.8e-06 0.00089 20.2 0.5 1 23 430 453 430 453 0.97 10 12 0.021 2.1 9.6 0.2 1 23 463 485 463 485 0.94 11 12 6.1e-06 0.00062 20.7 1.7 1 23 491 513 491 513 0.99 12 12 2.9e-05 0.0029 18.6 0.9 1 23 519 541 519 541 0.98
Sequence Information
- Coding Sequence
- atggaGTCCGAGGCAAAAGTAGATTCGCCTGCCAGCAAAGTTCCCGATTGGGTGCAGGAGGAACTCTTTGTAGATGTGTTGAAAGAATCCGTCAAGGGATTCTGCAAAATCAAGAGCTTCAAGGTTAACAGTGGCTCGGCAACCGGCGAAAATTACTCCACAATCATGCTGAGAGTAAACATTGGAGTTGAACTCGAGCATGGCAAGGAAAAGTCAGTGTCCTACATGCTGAAGGTGCCACATCAACAGGAACTGTTTCAGCAGCTAGAAAACGATATATTTTCCGCAGAGCGTGATCACTGCGGACAGCAGTcggcgctagtgacgaaagcagcacgaaggCTGCATGAGCATCATCGTCAGGAACACACTTGGCTGGAGGCGCCCTACGTCTGTCAGCGCTGTGACTCGCGCTTTCTGAGCGCCCAACTGCTGGACCATCATACGCAGAAACTTTGCCAGAATACTCTAAAGCGTTTCATGTGCGACAAGTGTCCGCAGCGTTTCTTCTGGCGTCGTAATCTGCGTGCTCATCTCGTGGAGCATAAAAACAAGCAAGAGAATTACCCATGTGATCAGTGCTCACGCAGTTTTCAGGATAAAAGCGCCGTGACGAAGCACAAACTCATGCTTCACGATGTCAGCAATGAGCTGATACCGTGTCGCTGGTGCACAAGGACATTCTTCCGCCCCGCCCTGCTGCATAAGCATGTGAAGCGTCATGGCTTCACTGGAGAGGATCTGCCCTTGGCTGAGACACTGCTGGCGGATGCCGCCAAGCCATCCGGACCGAAGACGATCATTTGCAAGCTATGCGACATGCAGTTCATCAGCATTGCCGATTTGCGAAGACACATTTCAATGCAGGCACACAGCGTTGAGTTTTGCAATTATATGATTAGTACACAGGATGGATTCGAGCTGCAGCTGGAAGAGACGGACGATAGCGATGACGAGACCACTGGATCTGCTGGCAGATCCTACCGGTGTGATCTATGCGATATGGCCTTCCAGCGTCGTAGGGACATGAGCGAGCATCAGTATTCCTTGCACACATTCGATAAATTGCCCTACTCCTGTGAGCAGTGCATCTACAAGACAGTCGATAAGAGCATGCTGGAACATCATTTGCGCACACAGTGCCTCAACCAGGAGAAGAAATTCAAGTGCTCGCGTTGTGGCTACAAATTCATGTGGAAGGAAAATCTGGAACAACATATGGCCAGCCAACACTCCAAGTCTTCCAATCAGACGGCCGTTGCGACCAAGCGAAGTCGTCGCTTTAGATACCAGTGTCCGCACTGCTGGCGCTCCTTTGTGGTCCAGCCCAGTCTGGACAAGCACATACGCGACATGCATGTGGCCAAAAAGAATCCCGGCAAGAAGTATCTTTGCTCATTGTGCGGCCTGGAGTCGCTCACCCCCAACAAGCTCAACATCCACATGCGTCGTCACAACAGCGAAAAACCATTCAAATGCGATCTCTGCGACATGTCCTTTACAGTTTACTATGAACTCAAGGTTCATCGTCGGAAGCATACGGGCGAGCGACCCTATCAATGTACTTTCTGTGCCAAGGACTTCGCACGTCCGGACAAGCTAAGGCGACATGTGTACATGCACAGCGTTAAGCGTTAA
- Protein Sequence
- MESEAKVDSPASKVPDWVQEELFVDVLKESVKGFCKIKSFKVNSGSATGENYSTIMLRVNIGVELEHGKEKSVSYMLKVPHQQELFQQLENDIFSAERDHCGQQSALVTKAARRLHEHHRQEHTWLEAPYVCQRCDSRFLSAQLLDHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQENYPCDQCSRSFQDKSAVTKHKLMLHDVSNELIPCRWCTRTFFRPALLHKHVKRHGFTGEDLPLAETLLADAAKPSGPKTIICKLCDMQFISIADLRRHISMQAHSVEFCNYMISTQDGFELQLEETDDSDDETTGSAGRSYRCDLCDMAFQRRRDMSEHQYSLHTFDKLPYSCEQCIYKTVDKSMLEHHLRTQCLNQEKKFKCSRCGYKFMWKENLEQHMASQHSKSSNQTAVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNSEKPFKCDLCDMSFTVYYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -