Basic Information

Insect: Drosophila limbata
Gene Symbol: -
Assembly: GCA_963924055.1
Location: OZ001354.1:19019813-19022341[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.09 9.1 7.6 4.0 1 23 271 293 271 293 0.97

2 11 1.7e-05 0.0017 19.3 0.4 1 23 299 321 299 321 0.99

3 11 0.0002 0.02 15.9 2.9 1 23 327 350 327 350 0.97

4 11 0.39 39 5.6 3.8 1 20 356 375 356 378 0.95

5 11 0.0096 0.96 10.6 1.7 1 23 384 406 384 406 0.97

6 11 4.4e-05 0.0045 18.0 1.2 1 23 412 434 412 434 0.98

7 11 0.00018 0.018 16.1 1.8 1 23 442 465 442 465 0.96

8 11 0.0071 0.72 11.0 0.4 2 23 472 493 471 493 0.96

9 11 0.00049 0.049 14.7 1.8 1 23 499 521 499 521 0.99

10 11 8e-05 0.0081 17.2 2.3 1 23 527 550 527 550 0.97

11 11 1.7e-06 0.00017 22.5 2.8 1 23 564 586 564 586 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.09	9.1	7.6	4.0	1	23	271	293	271	293	0.97
2	11	1.7e-05	0.0017	19.3	0.4	1	23	299	321	299	321	0.99
3	11	0.0002	0.02	15.9	2.9	1	23	327	350	327	350	0.97
4	11	0.39	39	5.6	3.8	1	20	356	375	356	378	0.95
5	11	0.0096	0.96	10.6	1.7	1	23	384	406	384	406	0.97
6	11	4.4e-05	0.0045	18.0	1.2	1	23	412	434	412	434	0.98
7	11	0.00018	0.018	16.1	1.8	1	23	442	465	442	465	0.96
8	11	0.0071	0.72	11.0	0.4	2	23	472	493	471	493	0.96
9	11	0.00049	0.049	14.7	1.8	1	23	499	521	499	521	0.99
10	11	8e-05	0.0081	17.2	2.3	1	23	527	550	527	550	0.97
11	11	1.7e-06	0.00017	22.5	2.8	1	23	564	586	564	586	0.97

Sequence Information

Coding Sequence: ATGCCAAATCGAAAACGTAACTCCGACTCTGAAGACTTGCAATCGTTCCTTAATAATTTTCACAAGGAAATTGAGGATGGCAGCTCTGAAGCCAAAAATGCTAAGGATAAGGAGAGTGTCATCGGTGTTGATGcggaaaaagaagaagaggatGAGGAAGATGATGATAAGTACTTCATTGACGATGAGGGCAATTGCTATATCAAAACGACGCCCAAGAAGCAGCAcaagcttaaaaataaactaaagccACCGGTAGCCTCAACACCAGCTGCAGTAACTGTACGCAGTGCAACCAGATCAAGCAGCACAAATGCCTCGAAAGCAATTAATCTGCGTCCAGTCAAGCCCAAATCGGAACCGACTCAGAAATCTGAATCCACGCCCAAAGCAATCGGTCTTCGTTCAGCTGCGCAGAAGAAGACTCCAAATAAGACGACACCAACGTCAGTCAGTTCTCCAAAGGCTTATTTACGATCCCAACGCAAGGCCATAAGACCGGAATCAAAACTTGTAGACATTTCCGCATCCAATGAAGTGGTGATAAATAATGAGGAGCTAATCGAAGAGCTTGTGGATGATCCAATGATCATCAATGATAGCATTGTTTCAACTAAAGAATCGGATTTGAATGATTCTGTAACAAATATCGATTCAATCGTGGTAAAGGGCAACATAAGCGACGATGAAGTCTTCGAGTTTGAGGATAATGCAACCAACATGTCTGCAAAGCCGGACGTGGACTTTGTGCTATCCGGCAAAGAGTACAAACTCAAGACGTTGCCAACGCAGTCAGCTGAATCGCACAAGTTCGCCTGCTCCCATTGCAGCTACACAACCAATAAGAAATTCCTAATCTCACGGCATGTTCGCTCTCATGACGCCGAGCTGTCGTTCAAGTGTTCGATCTGTGAGCGCGGCTTCAAGTCAAACATAGGACTGGTGAATCATCTGAACACGCATATGGGAAACAAGCCGCACAAGTGTAAGCAGTGCGAAAGTGCGTTTACAACGAGTGGAGAGCTTATACGCCATACCCGCTATAAGCACACCAAGGAGAAACCACACAAATGCACCGAGTGTAGCTATGCCAGTGTCGAGTTGACCAAGCTGCGTCGCCACATGACGTGTCATACTGGTGAGCGGCCGTACCAGTGTCCGCACTGCACCTATGCTTCCCAAGACATGTTTAAGCTGAAGCGTCATTTGGTGATACACACAGGGGAAAAGAAATACCAATGTGACATCTGCAAATCGCGATTCACGCAGTCGAATTCTCTCAAGGCGCATAAGCTAATCCACAGCGTGGTCGACAAGCCAGTCTTCCAGTGCACACTCTGTCCAACAACATGTGGCCGCAAAGCGGATCTACGCACCCACATGTCCAACATGCACACCTCGGATAAGCCCTTGGTTTGCAAGCGATGCGGACAAGAGCTACCCGATCGCTATCAGTATAAGCTGCACGTGAAGTCGCACGAAGGCGAGAAATGCTATCGTTGCACCCTTTGCAGCTATGCGTCGGTTTCGCAGCGGCATCTGGACTCTCATATGCGGATTCACACCGACTCAAAGCCCTTCAAGTGCGATCTGTGCCCGCAGGCATTCCGCCAGCATCAATTGCTTCGccgccataagaatataatgCACAATGAAGACTATAAGCCGCCGGAACCACGAGAGAAGCGACACTCATGCCCCAGCTGTCCACGTATCTTTACCCATAAGGGCAATCTGATGCGGCACATGGAGACACACGATGATACACTGAATGCGCGAGAGGAAAAGCTTAAACTAAAATTGGGACGCAACGTTCGATTACAGCCAGATGGCAGCATTGTGACTTTGCTAAACAGCAAAGAAATTGAAGATATTTCCATTGACTTGGATGAGCAGTATGATACCATTGAGCTTGAGCAGTTAGAAGAGGACGATGATGAGGACGACGAGGTACCCAGTGATGACATTGTGGAACCCGTTCCCAGTTCCACGCCGAGAATGAAACAAACATCCAATAATGTCGTAATCAGAGATGGTAAACATAGGACACAAAGCAAGCCCATAATTATTAATCGCCAACTGAAAATGAACGTTCCTCGAGGGCATCGCGAGGTAACAACTCAGGCTGGAACATTTCGCATTAAAGAGGAGCCGGATGCTAATGAATTTACCGTGGAGCTGCAGGGTGAAGATAATCAGTTCATGGTCGTCCAACTGGTCAACGATGATAATGAAGTAGTAGTCAAACGTGAGCCGAGCACGCACAAAATTAATGCCAACAATTGTTTTGGCTTCGAGGATGATGCCGAAACCATATACGAGGAGTATGATGAGTCTGTGGCTGAAGTAGATGGCACATCACAGGAGTTTATGCACCTTATGGATATGATTGAACAGGACACGTAG
Protein Sequence: MPNRKRNSDSEDLQSFLNNFHKEIEDGSSEAKNAKDKESVIGVDAEKEEEDEEDDDKYFIDDEGNCYIKTTPKKQHKLKNKLKPPVASTPAAVTVRSATRSSSTNASKAINLRPVKPKSEPTQKSESTPKAIGLRSAAQKKTPNKTTPTSVSSPKAYLRSQRKAIRPESKLVDISASNEVVINNEELIEELVDDPMIINDSIVSTKESDLNDSVTNIDSIVVKGNISDDEVFEFEDNATNMSAKPDVDFVLSGKEYKLKTLPTQSAESHKFACSHCSYTTNKKFLISRHVRSHDAELSFKCSICERGFKSNIGLVNHLNTHMGNKPHKCKQCESAFTTSGELIRHTRYKHTKEKPHKCTECSYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHLVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCTLCPTTCGRKADLRTHMSNMHTSDKPLVCKRCGQELPDRYQYKLHVKSHEGEKCYRCTLCSYASVSQRHLDSHMRIHTDSKPFKCDLCPQAFRQHQLLRRHKNIMHNEDYKPPEPREKRHSCPSCPRIFTHKGNLMRHMETHDDTLNAREEKLKLKLGRNVRLQPDGSIVTLLNSKEIEDISIDLDEQYDTIELEQLEEDDDEDDEVPSDDIVEPVPSSTPRMKQTSNNVVIRDGKHRTQSKPIIINRQLKMNVPRGHREVTTQAGTFRIKEEPDANEFTVELQGEDNQFMVVQLVNDDNEVVVKREPSTHKINANNCFGFEDDAETIYEEYDESVAEVDGTSQEFMHLMDMIEQDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00585393;
90% Identity: iTF_00602016;
80% Identity: -