Basic Information

Insect: Drosophila limbata
Gene Symbol: -
Assembly: GCA_963924055.1
Location: OZ001352.1:17424321-17427457[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00027 0.027 15.5 4.9 1 23 167 190 167 190 0.97

2 16 0.0013 0.13 13.3 3.1 1 23 228 251 228 251 0.96

3 16 0.00065 0.066 14.3 3.3 1 23 317 340 317 340 0.96

4 16 0.0087 0.88 10.8 0.4 2 23 392 413 391 413 0.96

5 16 3 3e+02 2.8 0.7 1 20 526 545 526 547 0.75

6 16 0.021 2.1 9.6 0.6 1 23 556 578 556 578 0.94

7 16 0.00026 0.027 15.5 0.6 1 23 585 608 585 608 0.96

8 16 0.00036 0.037 15.1 1.4 2 23 616 637 615 637 0.96

9 16 0.0027 0.28 12.4 0.1 3 22 665 684 663 687 0.89

10 16 0.0033 0.34 12.1 0.8 1 23 724 747 724 747 0.96

11 16 0.04 4.1 8.7 0.7 1 22 754 775 754 775 0.97

12 16 0.00087 0.088 13.9 0.9 1 23 784 807 784 807 0.97

13 16 1.7e-05 0.0017 19.3 0.5 1 23 826 849 826 849 0.97

14 16 0.039 4 8.7 0.2 1 23 859 881 859 881 0.94

15 16 1.2e-05 0.0012 19.8 1.7 1 23 887 909 887 909 0.99

16 16 5.4e-05 0.0054 17.7 0.9 1 23 915 937 915 937 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00027	0.027	15.5	4.9	1	23	167	190	167	190	0.97
2	16	0.0013	0.13	13.3	3.1	1	23	228	251	228	251	0.96
3	16	0.00065	0.066	14.3	3.3	1	23	317	340	317	340	0.96
4	16	0.0087	0.88	10.8	0.4	2	23	392	413	391	413	0.96
5	16	3	3e+02	2.8	0.7	1	20	526	545	526	547	0.75
6	16	0.021	2.1	9.6	0.6	1	23	556	578	556	578	0.94
7	16	0.00026	0.027	15.5	0.6	1	23	585	608	585	608	0.96
8	16	0.00036	0.037	15.1	1.4	2	23	616	637	615	637	0.96
9	16	0.0027	0.28	12.4	0.1	3	22	665	684	663	687	0.89
10	16	0.0033	0.34	12.1	0.8	1	23	724	747	724	747	0.96
11	16	0.04	4.1	8.7	0.7	1	22	754	775	754	775	0.97
12	16	0.00087	0.088	13.9	0.9	1	23	784	807	784	807	0.97
13	16	1.7e-05	0.0017	19.3	0.5	1	23	826	849	826	849	0.97
14	16	0.039	4	8.7	0.2	1	23	859	881	859	881	0.94
15	16	1.2e-05	0.0012	19.8	1.7	1	23	887	909	887	909	0.99
16	16	5.4e-05	0.0054	17.7	0.9	1	23	915	937	915	937	0.98

Sequence Information

Coding Sequence: ATGACAAGGACATGTAGAATCTGCGGAGGCGCAGATGGACGCTATTGGATTGAGACACCAGTCGTAAAATACGCAGAGAAAACATTCAATCAACTGCTGGTGGAGCTAACCAAACTTGAGGTCGCTTTGGATCAAGCTGACAAACTGCCGCCCTGGCTTTGCCGCAACTGTGCACAGAGATTGGAAAATGCATACGATTTTGTCGTGGAAGCGCGTGAAACTCACGAGCTCTGGATCCAGAAGCTGGCGACAGAAGCAGCACTGGATGATGCTGAAAAAGGCACTTTAGAATGCCTGCGTGAGGTGCCAATACAGTTGCTGGAGATTGAGGGAGTGACTATTAAGATGGAAGAGCCATCAGAGCCCGCCATGCCCCAAGCTGATGCAACCATTTCAGTTGATCCGCTCATCAAGAAACATCTGGATGATGGTAGCGATGATGAAGACGATGTGCCGCTGAAGCAACGCAAAGCGGACTGCGCCAAATTGTCAATGCTACACAAATGCAATAGATGCGACAAAGCCTTTAAATATGTGACCAATCTCTTCAGGCACAAACAGCGAGATCACAGTCCTGTTCCAAGCAAGGCAAAGAACAAATCAGGAGTGGCAGATACAACTGCTGACCGCTCAGAGCCATTCCTCCACAATTCCGATGTGGACGATGAAGATGATAACTACTACAAGTGTGATCAGTGCGACAAGTCCTACAAGTACATAATGCTCCTCATCAAGCATAAGCACAAGGCCCACGGCGCCAACCAGTTGCCAGCGGAGCCAATGCCAATTCGAAAAAGCGAATCGAGTTTGGAGCAAGCTCCTAAAACCACAACGACTCAGCGTCAGCGCTCAAAGGCGCCCAGCACAGATTCCTTGGTGCATAGCTTAATCAAAGAGATTAAAACACCCGAGGAGGACGACGCAGACTGCACAGGCTCCGACAATTATTACAAGTGCGATCAATGCGACAAGTCCTACAAATATATTGTGAGTCTCATCAAGCACAAGCACAAGGAGCACAATGAGTACAAAGATTCCGATGAGGATGAGTACGAAGCATCCTCATCCACTTATGCCGCAGCGAACCCTTCACTGTCGAAGCCATCACGCATCGACCGAAGGGTAAAGAGCTTCGATCTACATCGCTGCAAGCCGAATGGTTCCAAGGAAATTCAATGTATGATCTGTCTGCGAAGATTTATCAAACTGAGAGAGCTGCGCGATCACCTCAAGGCACATCCCAAAGACTTTACATTCGAGGCTCACGGTGAGCCCATTGAACGCATTGCTGAGGGCTTTTACAGGACCGCCGTGGAATCAACGGCTGTCGGCCTGAAAAGGCGTATTCTAAATGATCTCCAGATTGGCATGTATGGCCGTTATTATTCCATTACCAATGAGGCGCGCTACGAGATGAATCTGGACAGCTCGGACACGGACAGCGACGGCGAGGCGGGAGTAGTTGAGCGTCGCAGCTATGCGTGCGAATTGTGTGACTCGCCCTCCGCCATTTGGCCACGTAAATTTCAGCTGCATGAGCATCATCGTCAGGAACACAGTTGGCTGGAGGCGCCCTACGTCTGTCAGCGCTGTGACTCGCGCTTTCTGAGCGCCCAACTGCTGGACCATCATACGCAGAAACTTTGCCAGAATACTCTAAAGCGTTTCATGTGCGACAAGTGTCCGCAGCGTTTCTTCTGGCGTCGTAATCTGCGTGCTCATCTCGTGGAGCATAAAAACAAGCAAGAGAATTACCCATGTGATCAGTGCTCACGCAGTTTTCAGGATAAAAGCGCCGTGACGAAGCACAAACTCATGCTTCACGATGTCAGCAATGAGCTGATACCGTGTCGCTGGTGCACAAGGACATTCTACCGCCCCGCCCTGCTGCATAAGCATGTGAAGCGTCATGGCTTCACTGGAGAGGATCTGCCCTTGGCTGAGACACTGCTGGCGGATGCCGCCAAGCCATCCGGACCGAAGACGATCATTTGCAAGCTATGCGACATGCAGTTCATCAGCATTGCCGATTTGCGAAGACACATTTCAATGCAGGCACACAGCGTTGAGTTTTGCAATTATATGATTAGTACACAGGATGGATTCGAGCTGCAGCTGGAAGAGACGGACGATAGCGATGACGAGACCACTGGATCTGCTGGCAGATCCTACCGGTGTGATCTATGCGATATGGCCTTCCAGCGTCGTAGGGACATGAGCGAGCATCAGTATTCCTTGCACACATTCGATAAATTGCCCTACTCCTGTGAGCAGTGCATCTACAAGACAGTCGATAAGAGCATGCTGGAACATCATTTGCGCACACAGTGCCTCAACCAGGAGAAGAAATTCAAGTGCTCGCGTTGTGGCTACAAATTCATGTGGAAGGAAAATCTGGAACAACATATGGCCAGCCAACACTCCAAGTCTTCCAATCAGACGGCCGTTGCGACCAAGCGAAGTCGTCGCTTTAGATACCAGTGTCCGCACTGCTGGCGCTCCTTTGTGGTCCAGCCCAGTCTGGACAAGCACATACGCGACATGCATGTGGCCAAAAAGAATCCTGGCAAGAAGTATCTTTGCTCATTGTGCGGCCTGGAGTCGCTCACCCCCAACAAGCTCAACATCCACATGCGTCGTCACAACGGCGAAAAACCATTCAAATGCGATCTCTGCGACATGTCCTTTACAGTTTACTATGAACTCAAGGTTCATCGTCGGAAGCATACGGGCGAGCGACCCTATCAATGTACTTTCTGTGCCAAGGACTTCGCACGTCCGGACAAGCTAAGGCGACATGTGTACATGCACAGCGTTAAGCGTTAA
Protein Sequence: MTRTCRICGGADGRYWIETPVVKYAEKTFNQLLVELTKLEVALDQADKLPPWLCRNCAQRLENAYDFVVEARETHELWIQKLATEAALDDAEKGTLECLREVPIQLLEIEGVTIKMEEPSEPAMPQADATISVDPLIKKHLDDGSDDEDDVPLKQRKADCAKLSMLHKCNRCDKAFKYVTNLFRHKQRDHSPVPSKAKNKSGVADTTADRSEPFLHNSDVDDEDDNYYKCDQCDKSYKYIMLLIKHKHKAHGANQLPAEPMPIRKSESSLEQAPKTTTTQRQRSKAPSTDSLVHSLIKEIKTPEEDDADCTGSDNYYKCDQCDKSYKYIVSLIKHKHKEHNEYKDSDEDEYEASSSTYAAANPSLSKPSRIDRRVKSFDLHRCKPNGSKEIQCMICLRRFIKLRELRDHLKAHPKDFTFEAHGEPIERIAEGFYRTAVESTAVGLKRRILNDLQIGMYGRYYSITNEARYEMNLDSSDTDSDGEAGVVERRSYACELCDSPSAIWPRKFQLHEHHRQEHSWLEAPYVCQRCDSRFLSAQLLDHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQENYPCDQCSRSFQDKSAVTKHKLMLHDVSNELIPCRWCTRTFYRPALLHKHVKRHGFTGEDLPLAETLLADAAKPSGPKTIICKLCDMQFISIADLRRHISMQAHSVEFCNYMISTQDGFELQLEETDDSDDETTGSAGRSYRCDLCDMAFQRRRDMSEHQYSLHTFDKLPYSCEQCIYKTVDKSMLEHHLRTQCLNQEKKFKCSRCGYKFMWKENLEQHMASQHSKSSNQTAVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMSFTVYYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00579434;
90% Identity: iTF_00528986;
80% Identity: -