Basic Information

Insect: Drosophila limbata
Gene Symbol: -
Assembly: GCA_963924055.1
Location: OZ001354.1:4225403-4227622[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00013 0.013 16.5 5.4 1 23 225 247 225 247 0.98

2 12 5.5e-05 0.0056 17.7 2.8 1 23 253 278 253 278 0.95

3 12 8.4e-05 0.0085 17.1 0.7 1 23 285 310 285 310 0.95

4 12 0.00016 0.016 16.3 2.2 1 23 318 340 318 340 0.96

5 12 0.0003 0.03 15.4 0.8 3 23 349 369 347 369 0.98

6 12 0.00011 0.012 16.7 0.1 1 23 375 397 375 397 0.98

7 12 0.073 7.3 7.9 7.4 1 23 403 426 403 426 0.98

8 12 0.012 1.2 10.4 1.8 1 23 432 454 432 454 0.95

9 12 0.00023 0.023 15.8 2.3 1 23 460 482 460 482 0.98

10 12 3.4e-05 0.0035 18.3 0.1 3 23 567 588 566 588 0.97

11 12 0.0047 0.47 11.6 5.0 1 23 594 616 594 616 0.96

12 12 6.8e-06 0.00069 20.5 2.4 1 23 622 644 622 644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00013	0.013	16.5	5.4	1	23	225	247	225	247	0.98
2	12	5.5e-05	0.0056	17.7	2.8	1	23	253	278	253	278	0.95
3	12	8.4e-05	0.0085	17.1	0.7	1	23	285	310	285	310	0.95
4	12	0.00016	0.016	16.3	2.2	1	23	318	340	318	340	0.96
5	12	0.0003	0.03	15.4	0.8	3	23	349	369	347	369	0.98
6	12	0.00011	0.012	16.7	0.1	1	23	375	397	375	397	0.98
7	12	0.073	7.3	7.9	7.4	1	23	403	426	403	426	0.98
8	12	0.012	1.2	10.4	1.8	1	23	432	454	432	454	0.95
9	12	0.00023	0.023	15.8	2.3	1	23	460	482	460	482	0.98
10	12	3.4e-05	0.0035	18.3	0.1	3	23	567	588	566	588	0.97
11	12	0.0047	0.47	11.6	5.0	1	23	594	616	594	616	0.96
12	12	6.8e-06	0.00069	20.5	2.4	1	23	622	644	622	644	0.98

Sequence Information

Coding Sequence: ATGAATGAAGAGGCTCCAGCTTTAATGCATTCTATATGCCGCACTTGTTTGTCCAACTTGCAACTGAATGAAGCCTTCGACCTGTTTGCTGTTCCGGGCCTGGCCAAgaaactgtgtgtgtgcacttCGCTCTCGGTGGAGCACCAAGACGGATTCCCGAGAAACATCTGCACCACCTGCCACAGCCGTCTTAATGACTTGCATGACTTTCAAGTGCAGTGTGTGGACTCTGTGCAAAGGTTCAAGGAGTTGGTGACCAGAAACTGCTTCATAATCAGAACTATTCCAGAGGAGGATTCGGCCGTCGTGAATGTTACACTGCAGGATGTTGTCCATGAAGAGGAGCACAATAACTATGACCCCCTTTTCAATACAAAAGTAGAAATTGATAATGAGGATgatgtttttaaaatgattgaAGATGTCGACAAACAATCCGAGAATGGAGAGAGCTTTAAGGATGCATTTAATGACAGCGAAAGCGACTACAACAATGAGGATGAGAACTTCCAAGCGGATACCAGCGATTCCGATGACGAGACACCGCTGTCACGCCTACGGAGTAATACCAGAGCCACAAAGTCCAAGGCCAAAGGGGATGATGAGGATAAGCCTAAAGAAAAACAGAAACGTAAGCGTATTCCTGCAGCTGAGCGGCATTCGCATCGCACATTTGAATGTCACATTTGCAGTCAAAGTTTTAAGAAGGCATCATATTATGAGGAGCACATGAAACACCACAATGATCAATTGCCTTTCCAGTGCTCAGTTGAGAAGTGTAAGAAAGGCTTTACGACTTCGACAGGACTGAAAAGACATATGGAGCACACGCACACGGAACTATGCGATCTTCATCCCTGCACAGTCGAAGGATGCAACGAGTCCTTTGCTCAGACTCGAATGCTCACCCAACATATGAGAAAGGTGCATAACATTGCCAAGCCCATAATACATCCATGTCCGGAGTGCGACAAAGTATTCCGTTGTCCCATGGCGCTGAAGAAACACATGTATAATCACACCGGCGAGGAGCTGCCCTTTGGTTGTAACATCTGCCAGAAACGCTACCGAGTGAACACCGAACTTCGGGATCATCTTTTGCGACATGCCGGaatcaaaaactttgtttGTCCCTACTGCGGAGTAGGACGAACCACTAAACAGGAGCTGGACAAGCACATATTGACGCACACCAAGGAGAAGAAGTTCAAGTGTGATCAGTGCGATCATACTTCCCACAACAAGCAATGTATGACGAAGCACATCAGGGTTGTTCACATGAAAATCAGAAACTTCGTCTGCCAGTATTGTCCAAGATCCTTTGGCAGTGCTTATGCCTGCAAGAACCACGAGAAATTGCATACTCGGAATGATTGCTTCGAGTGTACAATTTGTGGAAAGAAATTCCTTTTCGAGAAGAGACTGACAAAGCATTTGAGGACTCACGAGAAGCGCAAAACTAAGTCTGCTACGAGCTCCAAAAAGACGGAATCTGATGGGGATGTACAGAAGAAGGAAAAGGAACCAGTAGCCGTCATGAAATTACCAGAAGTTCCTGCCAAGCCGAAGGATCCACGTCGAGTTGAGGTAGTGGATATATCTCAATTAGCTGGCACTGCCATTAACCCCTTTCCATCGGTATCTGTATCATCTTGGTCTCCGCAAGAGGATTTCGCCAAAAACGAAGGCCAGAACATTTGTCCGGAATGTGgcaaaaactttaataaaatcgCCGGTTTGAAACTCCACATCAAGACCGTGCACGATAAGATCAAGGACTTTGCCTGTCGCTTCTGTCCCAAACGATTTGGAAAATCTGGTCATCTCCGTCATCACGAGTATACACATACGGGGGAAAAGCCCTACGTTTGCAAAGTATGCAATCAGACCTTTAGGCATGATGGAACATTAAGAAGGCATATGGAATCACACAACAGACCACCAAAAGAGCCAAAGGAACCAAAGAAGCCAAAGCCCAAGTCAACAGATCAGGAGCCCAGACTAAAACTGAATATGGAACCAGTACAAAATTACGAGCAGTTTCAAGATCCAGAAGCAGAACGAGCGGCAGCAACGGCTCAACTGATGGCCCAGCAGCTGGAAGAGAGCGAGGCGAAGCGCAAGGCGGAAGCGAAGACTCGGGAAATTCAAGAGGCAGCGTGCGAGCAGCTCCAGAAATTGCAGCAGCCGCCAATAACCTATGATAGCTTAACTGAGTAA
Protein Sequence: MNEEAPALMHSICRTCLSNLQLNEAFDLFAVPGLAKKLCVCTSLSVEHQDGFPRNICTTCHSRLNDLHDFQVQCVDSVQRFKELVTRNCFIIRTIPEEDSAVVNVTLQDVVHEEEHNNYDPLFNTKVEIDNEDDVFKMIEDVDKQSENGESFKDAFNDSESDYNNEDENFQADTSDSDDETPLSRLRSNTRATKSKAKGDDEDKPKEKQKRKRIPAAERHSHRTFECHICSQSFKKASYYEEHMKHHNDQLPFQCSVEKCKKGFTTSTGLKRHMEHTHTELCDLHPCTVEGCNESFAQTRMLTQHMRKVHNIAKPIIHPCPECDKVFRCPMALKKHMYNHTGEELPFGCNICQKRYRVNTELRDHLLRHAGIKNFVCPYCGVGRTTKQELDKHILTHTKEKKFKCDQCDHTSHNKQCMTKHIRVVHMKIRNFVCQYCPRSFGSAYACKNHEKLHTRNDCFECTICGKKFLFEKRLTKHLRTHEKRKTKSATSSKKTESDGDVQKKEKEPVAVMKLPEVPAKPKDPRRVEVVDISQLAGTAINPFPSVSVSSWSPQEDFAKNEGQNICPECGKNFNKIAGLKLHIKTVHDKIKDFACRFCPKRFGKSGHLRHHEYTHTGEKPYVCKVCNQTFRHDGTLRRHMESHNRPPKEPKEPKKPKPKSTDQEPRLKLNMEPVQNYEQFQDPEAERAAATAQLMAQQLEESEAKRKAEAKTREIQEAACEQLQKLQQPPITYDSLTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00586113;
90% Identity: iTF_00586113;
80% Identity: -