Basic Information

Gene Symbol
cdc5l
Assembly
GCA_035045365.1
Location
JAWNPC010000955.1:39311-41086[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 5.8e-11 7.4e-08 32.6 0.0 1 41 238 279 238 284 0.91
2 4 0.00033 0.42 10.9 0.0 19 44 314 340 294 342 0.75
3 4 8.3e-07 0.0011 19.3 0.0 3 46 350 394 348 394 0.90
4 4 4.4e-10 5.7e-07 29.7 0.0 2 43 401 443 400 446 0.95

Sequence Information

Coding Sequence
atgtgcgATGTGGACAACCTGAAGTTGAATCATCAACAACTGCTGCAGGAAATTACCACGCTGTTGGCAACTAGTACCGAGACAAGCGATGCAAATGCCTTGCAATTGAACCAAGAACTTCAGCGGCGCCTGGAACAGGTGCGCAGACGTATATTGAAGCTTTTAGAGATAGTGCGCGGTCGTTACAAACGTAATGAGCAGACGCTCGTACGCCGCCAGAAACCACGCTGTCAAACCGTCCCAGCAGACGATGCTGACATCGTAGGCCAGAGTGGAGCAGTGCTGCGCGGCGGAACGTTTCGCTTTAAGGGCAATCTATACTTTCGCGATGCCGACGGACGTAGCTGTCCCAACAATGACGACTACGAGAGACGCTGCAACACCGAAATGTTTCCCACCGATTTTGATATGCGCTCCAAGCACGTCTGGACAGTGCTGGACAAAAAGAACATTGTCATGGGAATTAAGCAGCAGCTGTTGGACCATGCTAGATACCAGGCCGCAGCAGCTAACAGAGCACCCAACAACATCAATGACCGCAAACGCAAGGGCATCGATCTGCACGTACAAACAGTGGCCAGTTTGTTAGCTAATACTGATAGCAATTTCAGTATCGATTGGCATCAGGTTAGCGCACTGGATCTGGAGCATCGACATTCGTTCTACAGCTGTGAGGCCATGTGGCTGGTGTATTTGCAGCCTCAGCTGAAGCGCGACGACTGGACAGCTGAGGAGGACAAAGCTTTGCTGGCTGCGGCTAAAGCCAACAAGTTACAGAACTGGCAAGCCATAGCGGCTGCAGTTGGCCAGCGTTCCGACTATCAGTGCTTTGTGCGCATGCAGACAACGTTGCGTTTTCACTTGGAGCCAACAGGTGTGATGCGATGGGGTCATGCGGATAATGAACGTTTGCGCGCTGTTGTCTTGCGAAATACAGTGAATGGGTTGACGAACTGGTCACAGGTTGTCGAGCATTTTCCGGGCAGATCCCGATCGACATTAATTGgacgatatatgtatgtgttacATCCCAGCATCAGTCACGcTCCTTTTACACCCAGCGAGGATCTAATGCTGTTCGCTGCCGTTGAGGAGTACAATggcaaattcaattgtttCCCGCGTACTTTGTTTCCCAATCGGTCGCTGGCCCAGCTTCGTACACGTTATAACAATGTGCTGGCCCAGCGCAATAAAACCGATCCCTGGTCCATGGATGATGACACAAAGCTAATGGGTTTTGTTACCGAGCACGGCACCTCGCAGTGGGTGAAGTGTGCCAATCACTTGGGCAATCACACTCGTACCAGCTGTCGTACTCGCTTTCTAGTCATTAAGCGTTTTCTTGAGCAGCATCCGAACGCGACGGTGAGTGACATACCACGTCGCAAGGTCACCAAAAATGCTCCAGTAACCGCTGAGAACTGGGCGCAGCGCCTGCAGGAGTGGCAAGCGGATCCGGATTCACTAGTCATCGATTGCGCTCCCAAACGGAAGTCAAAAATACCCAAATTGGGATCAACCATTAACGGCAACTGTTTGGAGCCATTGCGTGGCATTAACTCACACATCTACGAGTACTTTAAGTATTCCTACAATCTGAAACTGCATGCTCCGCCAACACCAATCCCGCTACCACGCAATGAAGCATAA
Protein Sequence
MCDVDNLKLNHQQLLQEITTLLATSTETSDANALQLNQELQRRLEQVRRRILKLLEIVRGRYKRNEQTLVRRQKPRCQTVPADDADIVGQSGAVLRGGTFRFKGNLYFRDADGRSCPNNDDYERRCNTEMFPTDFDMRSKHVWTVLDKKNIVMGIKQQLLDHARYQAAAANRAPNNINDRKRKGIDLHVQTVASLLANTDSNFSIDWHQVSALDLEHRHSFYSCEAMWLVYLQPQLKRDDWTAEEDKALLAAAKANKLQNWQAIAAAVGQRSDYQCFVRMQTTLRFHLEPTGVMRWGHADNERLRAVVLRNTVNGLTNWSQVVEHFPGRSRSTLIGRYMYVLHPSISHAPFTPSEDLMLFAAVEEYNGKFNCFPRTLFPNRSLAQLRTRYNNVLAQRNKTDPWSMDDDTKLMGFVTEHGTSQWVKCANHLGNHTRTSCRTRFLVIKRFLEQHPNATVSDIPRRKVTKNAPVTAENWAQRLQEWQADPDSLVIDCAPKRKSKIPKLGSTINGNCLEPLRGINSHIYEYFKYSYNLKLHAPPTPIPLPRNEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-