Basic Information

Insect: Drosophila lacteicornis
Gene Symbol: -
Assembly: GCA_008044355.1
Location: VNKF01011871.1:340944-342389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00032 0.026 15.0 1.3 1 23 275 297 275 297 0.98

2 5 3.1e-07 2.5e-05 24.5 2.8 1 23 303 325 303 325 0.98

3 5 0.00027 0.022 15.3 4.7 1 23 331 353 331 353 0.99

4 5 1e-05 0.00085 19.7 0.9 1 23 359 381 359 381 0.97

5 5 1.7e-05 0.0014 19.0 2.3 1 23 387 411 387 411 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00032	0.026	15.0	1.3	1	23	275	297	275	297	0.98
2	5	3.1e-07	2.5e-05	24.5	2.8	1	23	303	325	303	325	0.98
3	5	0.00027	0.022	15.3	4.7	1	23	331	353	331	353	0.99
4	5	1e-05	0.00085	19.7	0.9	1	23	359	381	359	381	0.97
5	5	1.7e-05	0.0014	19.0	2.3	1	23	387	411	387	411	0.93

Sequence Information

Coding Sequence: ATGAATACCGCCACCCTGCCAGCGGTGCTGGTGAAGTGCCGGATTTGCATGGGCGAGTTCGAGGAAGGAACGATGACTTCTCTGTTCGAAGAGCAATCCGAGAGCGAGGATCCTTTACACGAGAGGGTGCAGATCTGCTGCGGCATCAGGGTTCGCGAATCCGCCAAGATGCCCGGCTCCGCCTGCACCAGTTGCTGCGAGTTCGTAGGAGTGTGGTTCAACTTTCGCCAGTTGTGTCTGAATGCACAAATGTATTGGGAGACGAGTTGCCCTGATGCGGAGAGACCTGCGTTTCTAGCGAAGGCCAGCGATGGCGAGTACATGGAGTATCTGTACGAGAAGTTGCAATTGAATTACTCTGAAACCAACtatgaggaggaggaagtcCTCCAAACGTCGGTGGAGGAGCAGTTGGAGGATACTTCCTCGCAGTCGCTCGATATCAGCGGGTTCATCGTGGCTGAGCAGgtcgagaacgagaacgaagGAGAGCACACCAATGAGGACTTGACAACTCAACTGGAGGCCTACGAAAATGAAGCACACACGGAGGGATATGTTGTGGACAAGTCTCAGCCCGTTGACGACAATTCGCTTCTGAACGAAGAGTACTACGAGGTGGACTTCGAAGAGGAGGAGTTCAACGACGACGATTTCTTAACCGCAGTAGAATCGCCCGATCCTACTGCCAGTTCGTTGGAGAAACGCAAGCCGGGGAGGCCACGCAAGCCGGACACCGAGCTCAAGGGTAAACGCAAGGAGAAGAGCGGCAGGGGAAAAACATCCAAGTCCGAGAGCCAAGAAGGCGAGCAGCCCACAATATTTACCTGCAGCATTTGCGGCCAAGTCAGTCACAAAAAGACCCTCTTCACAGCCCACATGATGGCGCACACAGACTATAAGCCGCACGAGTGCGAAATCTGCCACAAATCCTTCCGCCAGATGGGCGAGCTTCGAGCCCACATACGCCGCCACACGGGCGAGCGTCCTTACAAGTGTGCGCACTGCGACCGCCACTTTTACGATCGCAGCGAAAGGGTTCGCCACGAGAGAGTCCACACCAACACACGTCCCTACGCCTGCCAGGAGTGCGGAAAGACCTTCACGCACACAGCCATCCTCAAGAACCACATGCTGGTGCACTCGGGCGAGAAAAACTACAGCTGTGCCATATGCTCCAAGTCCTTCAGCCTGCAGCACCAGCTGAAGTCCCATCTTCAGACCCTCACCCATCGCAGCAGAGTTGAGCATTCCATGGCCAACTATATGGAGAGTTAA
Protein Sequence: MNTATLPAVLVKCRICMGEFEEGTMTSLFEEQSESEDPLHERVQICCGIRVRESAKMPGSACTSCCEFVGVWFNFRQLCLNAQMYWETSCPDAERPAFLAKASDGEYMEYLYEKLQLNYSETNYEEEEVLQTSVEEQLEDTSSQSLDISGFIVAEQVENENEGEHTNEDLTTQLEAYENEAHTEGYVVDKSQPVDDNSLLNEEYYEVDFEEEEFNDDDFLTAVESPDPTASSLEKRKPGRPRKPDTELKGKRKEKSGRGKTSKSESQEGEQPTIFTCSICGQVSHKKTLFTAHMMAHTDYKPHECEICHKSFRQMGELRAHIRRHTGERPYKCAHCDRHFYDRSERVRHERVHTNTRPYACQECGKTFTHTAILKNHMLVHSGEKNYSCAICSKSFSLQHQLKSHLQTLTHRSRVEHSMANYMES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00606571;
90% Identity: iTF_00590471;
80% Identity: -