Dlat006294.1
Basic Information
- Insect
- Drosophila lacteicornis
- Gene Symbol
- -
- Assembly
- GCA_008044355.1
- Location
- VNKF01013059.1:1514-8503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 1.4 9.6 0.5 1 23 1273 1296 1273 1296 0.97 2 13 6.7 5.5e+02 1.4 0.2 1 23 1458 1480 1458 1480 0.91 3 13 0.00015 0.012 16.1 2.7 2 23 1483 1504 1483 1504 0.97 4 13 5.8e-05 0.0047 17.4 0.2 3 23 1512 1532 1510 1532 0.98 5 13 4.8e-07 3.9e-05 23.9 4.1 2 23 1539 1560 1538 1560 0.97 6 13 4.5 3.7e+02 2.0 0.4 5 23 1573 1591 1571 1591 0.96 7 13 1.1 92 3.9 5.4 3 23 1598 1619 1596 1619 0.93 8 13 0.12 9.8 6.9 0.2 2 23 1630 1650 1629 1650 0.96 9 13 4.6e-05 0.0038 17.7 0.4 1 19 1656 1674 1656 1678 0.95 10 13 2.9e-05 0.0024 18.3 0.4 1 23 1686 1708 1686 1708 0.98 11 13 8.6e-05 0.007 16.8 7.6 1 23 1714 1736 1714 1737 0.96 12 13 0.00018 0.015 15.8 6.5 1 23 1742 1764 1742 1764 0.98 13 13 0.0022 0.18 12.4 6.1 1 23 1770 1792 1770 1793 0.96
Sequence Information
- Coding Sequence
- ATGGTCGACAACAGCGTTCAGTGCCCCGTGTGCACCCTGTACCTGCATGCGGGTATGAATCTCTCCGATCATCTGGAGACCCATCCCAAGGAACAGGTGATCAAGGCGCTGGTCCAGATGACGATTGTTGgtagcggcagcggcagcaacagcagcatggGCAGTGCCCTGGCGGCCGCTATGCTGGCAGGAGGCTCTGGCGGGGcagggggaggaggaggtggttcTGGTAGCGAAGATGACAAGACCGCCGTCGTATTGTCGTCTCCCGTTGGCGATGTCAAACCAGTTGTGCCCAGCAGTCCGCCGGCCATGTCCAAAACCATATCAGCTGCAATGCCAGTGGTGCCGACGGCACcggcaccgccaccgccgccgctctcCGCCGCACCCTCCTCCACATCCTCCTCTGcaagtagcagcagcagcagcagcaaaccgAGCAATCCACCGATGAAAGCACTGAAATGCGCACCGCCCACGACTGAGGCGCGAGCCAACACATCCGCACATCCCACCATAAGTAGCGTGTCCACACTGTACCAGCCGTCGCTGGTCGCTCCGGATTATCGCttcaaccagcagcagcagcagtcgggcTTTGGGCGTGGTGTTGCTGGCTCTAATGCAGCCACGCTGGTGATACCGCAGGTTGCGCAGCAGCACTTCCTCGCCAGCCATCAGCAGCAGGGACACTTTaaccatcatcagcagcagcagcagcaccagcaacaacagcaccagcagcagcaacaacagctgcaacagcagcagcagcaacagcagcagcagcaacatcagcagcagtcTCCCCTAAAGTATAGCTACGCCAACGctttgccgccgccaccgccactgcAGCTCTTtgcgcagcaacagcagcagccgacgGCAGCTCCATCGCAGTCGCCGTCGCAGCCGCAACAATCGCACCAGAAACCACCTCCCGCCTATGGAGCCGCCATCATATTCCTGAATcccccaccaccaccgccgccgtcaCAGGCCACTGCTTCGATGCACAGCCTGGGGCAGCATCAGCAGAACCATCAGAATCATCACCAGCATCCAACCCATTCCCATTCGCAGCAGCtgagccaccagcagcagccaagattgcagcaccaccagcctcTGAGCTTGCAGACCTACGGATCAAGCGTCAGCAGCAGTAGCTGTAGTTCCAGCTCTGCCTCCAACCCTGGATCCAACGCTGGATCCTCGGGCAATCGCGGCAGTCGGCAAACCAACTCACCCTTCGGAGCCCTGCTCAATGCAGCGGCTGCTGTGGCCTGCGCCTCGCCAGCCTCGGCCAGCGGCGCCTCCTCTTCGGTTCTGCGCTTTGCCGAATCACCGGTGGCCCACTATCTGGAGCGGGAGAACGGGGACTTCATTGTCCAGGAGACGCCCAAGCACATTGTGGAGTGTGTGGAGAAGGAGGACGGTGAGTTCTCGGTGATTGAGCGCATTTACCAATCCCCGCCGAGTGTGCTGCACATACACGATGACGATGAGGACGACgaagaggacgaggaggaggaggaagaggacgacgaggaccaCGATGAAGCTCCGccagaggaggaggtggacgGCGACGATGAGCGGGAGGAGaacagtcgcagtcgcagccgcAAGACAACGAAAAAGTCGCGAAAGGCCAAGCCCAAGCGAGGCTCCAAGCGCGTCtcggacgaggacgaggagttTATGAGCATCAGCAGTGGCTGCGAGAGTGAGTCCGGAGCGGAGCGCAAGCAGGAGCCGCTGGCCACGACCTCACAGGCTCCACCTCCGCTTTGCACGGCTCCCTCCACCAgctctgcagctgctgcaggcaCATCCACCAATCTCGGGGACACTCATTCCAATTCGGCCTCCAATTCCGCCTCGAACTCCACcacctccaccaccaccaagtCCAAGAAGAACCGGATCACCGTGCTCAGCGATGTGCCGCTCAATATGAACGAGTACCTCGATCTGATGGGCAACATTGTGGCCTCGAGTCGCATTGGGGCGGGACGGCCCTTTGCCGCTGTGGCCCCCATACCCCTCGTCAAggtggagaaggaggagccCCTGGACGAGTACGACAACGATCCGGGAGCGCAGCAgttggagcagctggagcagaagCCCAGTCTGGAGCACGGCACCACCAGCGTCATTCGCATGGCCAGCACGGCGACAACGACACCGGGCGGGACTGCCCCCGCCGAGGATCTCACCGAGCCGCCGCTCATGAAGGTCGAGGTGGAGCCCAACACCATGCTGCTGCCGCAGCGCTTCTCCACGCCCGCCCAGAGTCGCGGCCCCAAGAAATTAGTCATCAAACcaaaggcaacagcaacagcaacagcgacggcgacgacaacaaaaaagactgacaccaccaccagcccatcctcctcctccagcagcaccagcaacccATCCATATCAAGGGAACTGGGACAGGTGCAGGTGAAGAGCGAGACTCTGGAGGCGACCACTCCAGCGACAAGCAGCATTCTGGAGAAGCATCtgaccaccaccagcagccgcAAGCAGCACCACCACTCGGCGGTCGACGATGACGATGCCCGGGTCCTCCTGGAGTTTGCCAACTCCAAGCAGCCGCCACCGCTGGCCGCGTCCAGCACCACGTTCGTGGTGAATGCCACTGCGGGATCGGGATTCCCATCGGCTGGATCGGTCTTCGCCAGCAGccccaagcagcagcagcagcaggcggcggcggcggcgtcaaAGCCCGACGAGGAGTACATTCTGCCGGACAACAACAACCTGGAGGTGGACGAGATTGTGATATCCTCGTCGTCTTCCTACGCCTCCTCGGCGGCGGCCCAAGTGCAGGCTTCGTTGCAGCCGCCGGACTTCAACTTCCTTTACCACCAGACCACCAACAACACGGCCACCGCTCCTACCTATCCCTTCAATCCCTTCTCCAgacagcaccagcaccagcagcagcagcaggtgagcGATGCCACCAACGCGGCCACCCTGGCCTCTTCCTCCAGCAATTCCATGGACCACGACTCGATGAATGCCACCTTCCGGGTGGCCAAGACACAGTCGCTGCAGTGGtaccagcaggagcaggagcaggagaacgATCCGCAGATCCAAAGCGGAGCAGGTGGATCGGGCGTGGCCTCGGATGTGGTCAGCCACCAGCCCACCAACTTTAATGCCGCCCTGGCGGCCGTCGATTGCTGCAGCGTGGCGCTGGACGGGGAGGCCAAGTATCTGGACCTGGACACCTGCAAGCGGGAGCagctgagcagcagcagcaacctgcCCTCGGTCTCCGCCTCCACATCGACCACCTCGTCCTCGTTCGCCGGCGCCGGTACGGAGAGCAGCCTGGTGGGTGGCCTCAACATTCGCACCGACGAGAAGATGCCCGCCAAGGGTGAAATCTCCGAGCAGGAGAGCAACTGTGACATCGAGAACTCGTGGAGCGAGTCGGTTTATGGGGACATTTCGCAGCGATACTTCAGGAACCAGTTCTCCGGAGGCTACAACCCCGACTGGCGACAGGACTACTATCCGGCTCAGGATCTCAGCGGCGCCCAGCAGAGGGAGCACAAGCGCTTCGACTTCAATGCTTTGGATGATGAGGCCTCATCCAGCTCTAGGAAGAGCCAGCTGACGGATATCGCCCCAACGGCGGCCACCTCCTCCACTTCCACGTCATCGGCTTTGCTGGCGGGTCCACCAATAGCCTCGACATCCAGGGCTGCCGCTGAGGCGgcagcggaggcggcggctgctCTCGCCCAGCGGAAGCCGCAGCGCCGCAAGCTCTACAAGTGCCCCCATTGCGAGGGTATCTTCGAGAAGCTCAAGGAGCGGAATGCCCACATGATTAGTGACCACAACTATGTGCGTCAGAATCGACGGCTCATCTGTACCCAACCGGCGCCGGTGCCGCCGGTCAATGCGGCAGCGATGCTGCCCCAGCAGCATGCCCATGCCCACTTGCTCCTGCAGACGGCCGACGAGGCTGTGCAGGAGGACTCCAAGGATGGCATTGTGAAGATCAAGCAGGAGCAGTGCCCCGAGAAGCCGGAAGTAGAGCAGCAAATGCACCACGCCAATTCGGCCGAGTTGCTGTCGGATGTCAAGGACTCGGAGCTGCTGGGCATTGGCGGCGAGGGCGACCCCGACTTGGAGGGCGACATTAAGCCACCGAGCCAGCTGTTCGAGAAGTCAtcgccactgccgccgctggcCATGACCACGCCGGCTGCCAAGCTGGCGGCGCTCTATCGCATGCTCATCGCCTACAACGAATCGAAGCTGGGCCAGGAGCGCAACAACCTCAGCGAGCTGGAGCAGAAGGCCATGGAGAAGTCCATCTTCCTGTGCTACGTCTGCCGCACCGACTTCCCCTCCGTCAAGCTGTACGACGCCCATCTCACCGAGCATCCGGCCGAGTGCTTCACCTGCGGCAAGAAGTTCTACCGCTGGAAGAACTTCTCCCTTCACCTCAAGCGGCACCTGGGCTGGAAGGAGTTCGGCTGCTACGTCTGCGACAAGAAGTTCGTGGTGcggagcgccctcgtcgagcACATGCGGATGCACACGGGCCAGACGCCGCTCAAGTGCAAGATATGCGGGAAAAAGTTCAAGCGCTACTCGAATCTCACGCAGCACCGCAAGCGCCACACCAAGGTGATGGTGCGCAAGAAGGAGTACGTGTGCCACTGCGGCGAGGTTCTGCCCTCAAAGGCGCGCTTCCTGTGGCACAAGGAGACGCACGACCTGAAGCCCAAGTGCTGTCCCTATTGCTGCGACCGGTTCGTGCACGCCAACTCGCTGCGGCGCCACATCCGACTGGCGCACTCGGACAAGTTCGACTACGCCGAGCCCATGGAGTGCCCGATGTGCAAGCAGATCTTCGCCAAGACCTCGATCAAGGCCCACATGGCCACGCACTCGACGGAGCCGCAGTACGACTGCGCCATCTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATCCACTCGTGGGTCCACGCCAACCGCACGGCCAAGCCCTTCAAGTGCGAGTACTGCCCCAAGGCGTTTGTGCGCGAGCTGGACTTTAAGAACCACATCAACGCGCACAAGCAGATCAAGCCGTACACCTGCGAGTATTGCGGCTGCAAGTTCATCCGCAAGTACAACTACATGCGGCATCGACGCGAGCATCATGGCACCAAGAAGTTCACCTGCGACCAGTGCGACAAGTCCTTCCACCGCCACTACTATCTGATCGAGCACCGGCGCATGCATACCGGCGAGCGACCGTTCACCTGCACCATCTGTGGCAAGAGCTCCACCACCAAGACCAACCACAACAAGCATCTGAAGATCCATCACTCGCGCGACCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDNSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGSGSGSNSSMGSALAAAMLAGGSGGAGGGGGGSGSEDDKTAVVLSSPVGDVKPVVPSSPPAMSKTISAAMPVVPTAPAPPPPPLSAAPSSTSSSASSSSSSSKPSNPPMKALKCAPPTTEARANTSAHPTISSVSTLYQPSLVAPDYRFNQQQQQSGFGRGVAGSNAATLVIPQVAQQHFLASHQQQGHFNHHQQQQQHQQQQHQQQQQQLQQQQQQQQQQQHQQQSPLKYSYANALPPPPPLQLFAQQQQQPTAAPSQSPSQPQQSHQKPPPAYGAAIIFLNPPPPPPPSQATASMHSLGQHQQNHQNHHQHPTHSHSQQLSHQQQPRLQHHQPLSLQTYGSSVSSSSCSSSSASNPGSNAGSSGNRGSRQTNSPFGALLNAAAAVACASPASASGASSSVLRFAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDDEEDEEEEEEDDEDHDEAPPEEEVDGDDEREENSRSRSRKTTKKSRKAKPKRGSKRVSDEDEEFMSISSGCESESGAERKQEPLATTSQAPPPLCTAPSTSSAAAAGTSTNLGDTHSNSASNSASNSTTSTTTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGAGRPFAAVAPIPLVKVEKEEPLDEYDNDPGAQQLEQLEQKPSLEHGTTSVIRMASTATTTPGGTAPAEDLTEPPLMKVEVEPNTMLLPQRFSTPAQSRGPKKLVIKPKATATATATATTTKKTDTTTSPSSSSSSTSNPSISRELGQVQVKSETLEATTPATSSILEKHLTTTSSRKQHHHSAVDDDDARVLLEFANSKQPPPLAASSTTFVVNATAGSGFPSAGSVFASSPKQQQQQAAAAASKPDEEYILPDNNNLEVDEIVISSSSSYASSAAAQVQASLQPPDFNFLYHQTTNNTATAPTYPFNPFSRQHQHQQQQQVSDATNAATLASSSSNSMDHDSMNATFRVAKTQSLQWYQQEQEQENDPQIQSGAGGSGVASDVVSHQPTNFNAALAAVDCCSVALDGEAKYLDLDTCKREQLSSSSNLPSVSASTSTTSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDIENSWSESVYGDISQRYFRNQFSGGYNPDWRQDYYPAQDLSGAQQREHKRFDFNALDDEASSSSRKSQLTDIAPTAATSSTSTSSALLAGPPIASTSRAAAEAAAEAAAALAQRKPQRRKLYKCPHCEGIFEKLKERNAHMISDHNYVRQNRRLICTQPAPVPPVNAAAMLPQQHAHAHLLLQTADEAVQEDSKDGIVKIKQEQCPEKPEVEQQMHHANSAELLSDVKDSELLGIGGEGDPDLEGDIKPPSQLFEKSSPLPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKVMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTEPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00590408;
- 90% Identity
- -
- 80% Identity
- -