Basic Information

Insect: Drosophila lacteicornis
Gene Symbol: -
Assembly: GCA_008044355.1
Location: VNKF01007459.1:90184-92057[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.2e-05 0.00097 19.5 0.9 1 23 264 287 264 287 0.95

2 8 1.1e-05 0.00087 19.7 0.4 2 23 298 319 297 319 0.97

3 8 8.6e-06 0.0007 20.0 0.6 2 23 329 351 329 351 0.91

4 8 0.00013 0.01 16.3 0.2 1 23 357 379 357 379 0.97

5 8 4.1e-05 0.0033 17.8 2.5 1 23 385 407 385 407 0.97

6 8 0.00025 0.021 15.4 1.6 1 23 412 434 412 434 0.98

7 8 3.9e-06 0.00032 21.0 0.4 1 23 440 462 440 462 0.97

8 8 0.0021 0.17 12.4 4.0 1 23 468 491 468 491 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.2e-05	0.00097	19.5	0.9	1	23	264	287	264	287	0.95
2	8	1.1e-05	0.00087	19.7	0.4	2	23	298	319	297	319	0.97
3	8	8.6e-06	0.0007	20.0	0.6	2	23	329	351	329	351	0.91
4	8	0.00013	0.01	16.3	0.2	1	23	357	379	357	379	0.97
5	8	4.1e-05	0.0033	17.8	2.5	1	23	385	407	385	407	0.97
6	8	0.00025	0.021	15.4	1.6	1	23	412	434	412	434	0.98
7	8	3.9e-06	0.00032	21.0	0.4	1	23	440	462	440	462	0.97
8	8	0.0021	0.17	12.4	4.0	1	23	468	491	468	491	0.96

Sequence Information

Coding Sequence: aTGACGACGTGCCTCCCAGAAACAGAGGCCGCCAACGGATTAATTTGGCAACGATGGTGTCGCCTGTGCGCCAAGGATCATTCCCAGAACCGGAATGTGTACTCCCAAGAGGGGGAATCGCAGTCCTGGACGAGTAAGCTGGCGATGACCATCGGAAAATACTTTTGGGTGGatATCAAACAGGAAGACGAGCTGAGCAATTACCTGTGTCCCGAGTGCTTTACAATGATGGAGTGCCTCATGGAATTCTCGGAGAGAGTGCGAAAAGTGCAAACACTTTTCAACAGGCTGCAGACGACCATAAAGCCGGGCATTTCGGTGAACTACGAGGAGCTGCGACAGGATTGTGGATTGGTGGATACTAGTTGGAAGCACTTGATGTCCCGGGCGGCAGAACAGCTTCCTTTCAAAGAAGTAGAAGAGGATATTGTGTACGATGAGCCACAAGCCGCCGTCGGAGAGGATGAAGAGAATGAATTCTTAGGTGAAACAGTAAATATCATAGAGGAAGAGCTCCAAACTGTAGAGGAGGAGGTGGAACTGCAGGAGGCTCCCGATTGCACAGAGGATGTGAAACACATACCCGAGGACCAATTCGTCGATGAGTCGCAAGTAATCGAGGAAACCTACAACATCGAGGCCTACGAGGAAACCGCACAAGAGCCAGGCTCTGAAGAGGAGTTACAGAAACTAGAACCCAGCACGAAGCTCAGGGAGGAGCCACAGGAAACCGAAGAAGAGGCTTTCTCCACCGAGAATCTCgcggaggaggacgacgaacCCGCCATCTACAAGTGCAGCATCTGCAGCAAACCCTACAAGAAGCCAAAGGCCTACAAGCGCCACATGCTGGACGTGCACAACGTTGTGACAGTGGATTTGCCCCAGCTGGAGTGCAACCAGTGCGGCATAGACTTCCCCACGGCCAGCCAACTCCACGTCCACTATCGCTCCCATCTGCCCGCCAAAGCCAAGACGGGCAACTCCTGTCCGCACTGCGAGAAGCAATTCACCACGCCCGGCACCCTCAAGCGGCACGTGGAGGGCGTTCACAAGGGCATCAAGCCCTTTGTCTGCGACCTCTGCGGCAAGGGCTTCAAGTACATCACCGGGCTCAAGGACCACAAGCTGGTCCACACCGACGAGTGTCCCTTCGAGTGCCCGGTGTGCCAGCGATGCTTCAAGAACAAGGCCAGATTAAAGATCCATTCGGACACGCACAGTGCCAACCTGTACGAGTGCAGCATATGCGGCATGAAGCTGAAGACCCGGCGCACCTTCAACAAGCACAAGCTGGTTCACTCGGATGAAAGGCAGTACAAGTGTGATGTCTGCGGTTCGGCTTTCAAGCGCAGCAAGACATTGAAGGCGCACCTCATCCTGCACACGGGCATCCGACCGTACAAGTGTAACTTCTGCGGCAGGGAGTTCTCCAATGGCTCCAACTGTCGATCGCACAAGCGTCAGGCTCATCccaaggagctggccgaggagGAATCGCGAGGGGTTTCACGATCCACACTGCTGCCAATGTTGGAGGAACTGACCAAGGCTTCCAAGCTCATCAAAACACCTGCCAAGCCCAGCAAAACGAAGGGCAGCCTGCCGAAACCTTCGTCTGTTAAAAAGTCTGCGATTGCCAGCGAGTCTCCCGCAAAGGACACCGATGGCGCCATTCTCTACGAAATCGTCGAGGAGCTGGATTACACCTAA
Protein Sequence: MTTCLPETEAANGLIWQRWCRLCAKDHSQNRNVYSQEGESQSWTSKLAMTIGKYFWVDIKQEDELSNYLCPECFTMMECLMEFSERVRKVQTLFNRLQTTIKPGISVNYEELRQDCGLVDTSWKHLMSRAAEQLPFKEVEEDIVYDEPQAAVGEDEENEFLGETVNIIEEELQTVEEEVELQEAPDCTEDVKHIPEDQFVDESQVIEETYNIEAYEETAQEPGSEEELQKLEPSTKLREEPQETEEEAFSTENLAEEDDEPAIYKCSICSKPYKKPKAYKRHMLDVHNVVTVDLPQLECNQCGIDFPTASQLHVHYRSHLPAKAKTGNSCPHCEKQFTTPGTLKRHVEGVHKGIKPFVCDLCGKGFKYITGLKDHKLVHTDECPFECPVCQRCFKNKARLKIHSDTHSANLYECSICGMKLKTRRTFNKHKLVHSDERQYKCDVCGSAFKRSKTLKAHLILHTGIRPYKCNFCGREFSNGSNCRSHKRQAHPKELAEEESRGVSRSTLLPMLEELTKASKLIKTPAKPSKTKGSLPKPSSVKKSAIASESPAKDTDGAILYEIVEELDYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00569847;
90% Identity: iTF_00606501;
80% Identity: -