Dlac008249.2
Basic Information
- Insect
- Drosophila lacicola
- Gene Symbol
- -
- Assembly
- GCA_035045355.1
- Location
- JAWNPB010000148.1:6176758-6182127[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.34 23 5.8 0.1 1 18 354 371 354 374 0.78 2 8 0.00022 0.015 15.8 2.3 3 23 724 745 722 745 0.97 3 8 0.00023 0.015 15.8 3.2 1 23 786 808 786 808 0.97 4 8 2.4e-05 0.0017 18.8 2.0 1 23 814 836 814 836 0.96 5 8 4.3e-05 0.0029 18.1 0.9 1 23 842 864 842 864 0.98 6 8 0.0013 0.087 13.4 2.9 1 23 870 892 870 892 0.97 7 8 0.06 4 8.2 0.0 2 23 899 920 898 920 0.96 8 8 0.00036 0.024 15.2 0.4 1 21 926 946 926 947 0.95
Sequence Information
- Coding Sequence
- ATGACACCAGCAATTGAAACGGCAGCTGGGCCAACGGGGGGGCCAGTCACAGCCGAGGAGATGCGTCAGAGATGCGGCACCGTCTACACATGGAACTGTGCCGGCGAGCTGTACGGGATCGAGTGCGAGCTGTGCGAGGAGCGGCCCCTCTGCGCTCTGGATGAGTTCGCCGAGCATATGGAGCTGTGGCATTCCGATTGGCAGCAGTCGCCCGTCGACGAGCTAATGCTGGAGGTCTTGGCCGAGCAGTCCAGCGGCGGCGAGGTCAATGAActcaagcagcagctggtccAAGAGCTGAATGCCCTCGACGCCGCACACCACCACAACCAACAGCTGACCGAAACGCTGCAGCTGAACAATCAAATCAAGTTCGATCGGAACAGTCAGCTGCCCGAAGTGGAGCCCCAGAAGCTGACGAGCGACCACGTCCAGCAGCTGATAGAGCTATATCAGGCGCATCCGCGCCTCTGGGATCAGTCGCATCCCGAATTCCGGGACGTGGACCGGGGCCGTGAATCGTGGCAGCAGATAACGGACGCATGGAGTGCGCACTGCGGCCGGAGCTTCAGTGTGACAGACGTGCGGATACGCATCTCGACGCTGTGCCAGCGATTCCTGAAGCAGCGGGAACGCGTCGCCGCCGAGGGCGAGCTGGAGGAGAGCATCAAGTTCGTGCACTACGACCAGCTGCGATTCCTGTGCGCGCAGCAGTCGCTGCTGAAGCGCCAGGAGCACTTCACGCACGAGAACCGCAAGCTGCTCGAGATCTACGAGCACTATCCGATCCTCTGGCACAATGCCCACAAGCGGCTGCGCTGCGCGGAAACGGTGCGCCAGCGGCACGAGGCGCATCGCGGTCTCCAGCTGGCGCTGCGCATGTGCGGCGTCAAGCTCTCCGGGCTGGCCATACAGCGGCGGCTGCAGTCGCTCCGGAAACGATATCGCCTGGAAAAGATACGGTATCTGCACAGCGTGGTCGAGGGCAAGCAGGCGGAGTTTGTGTCCGGCTTCGAGCACTATGCGGAAATGGAGTTCCTGCACAAACATATCGATCCGTATGTGTGCGCCAGCTGTGGCAAGATCTTTGAGAATCTGGTCAGTCATCAGGCGCACGTGCAGGGCAACTGCGAGGAGCAGGCGCTGGCGGGCATGGAAACAGACCACGAGACGGAGGCGACTGTGGGTGAGCTAATGGCGCTCATGGAGATGGaccaggagctggagcaggaggtggaggtggagttGGAGGCGGAACCGAAGGAGCAGCTGccagaggagcagcagctgccgcataTAAAGGAGCACACGGAGCTGTTGGAAGCGGAGCCGGAGCAGGCGATCGTGGCGACGCAGCCACAACCGGCGGATGAGATAACGACGAGGCTGCACAGTCTAGCCGCCGCCTGTGCCGCAGACGTGCAGCCGGCAGCcagcggcgccggcggcgagGATCTGACGGAGACCTCGTCCGAGGGTAGCCTGTCGCCGGGCGTCCAGCTGCGCATGCGACTCAGCCTGGAGCTGACGCACCGGCTCATCGAACTGTACCAGGCGCAGCCGCATCTGTGGGATCCGAATCATCTGGACTATCACGATCGGCAGCTGCGTCGCCAGGCCTGGCACGGCATTGCCGCCGAGCTGAACGCCTATGCCGGCTGCCCGGGCCGCTTCAGCTGGCAGATGCTGCACCGCAAGCTCACGGACTATATCAAGTATTATCGCAGGGAACGGCAGCGGGAGGCTCTGGCCGTCGAGGGCAGCGGCGAGGGCACGCGCTGGGGCTTCTACGAGGCATTCAGCTTCCTGGACGACGTGGTGCCCATCAACTGTGTGCTCCAGAaatcgctgcagcagcgcgaCAGCAACCTGAAGATCATCCAGGTCTACCAGAGCTACGAGCAGCTCTGGTGCACCAATCATCCGGACTATACCAAGCGCAAGCAGCGTTTGCGCCATCTGGAATCGCTGTGCACCCGACTCCAGGAGGAATGCAATCTCCAGATCAGCGTCGAGCGCCTCAAGAGCCGCCTGATCGAGTTCCGTTGCCAGTATCGACAGTGCAAGGAGGCGCGCCAGGCGGCCATGAGGCGCGGCGAGGATTGGCAGCCCAGCTACGAGTACTATGCGCCGCTGCAGTTTCTCGAGCTGCACGTCTCGCCCTTCGGGTGTGGCCACTGCTCGGCGAGCTTCAAGCGACGCAGCGACTACTTGCGCCATCAGCGCAATGTCCACcccgagcagctgcagcagcagcagcaggaggagcagcagcaggagcaggagcaggagctgccgCGCCAGCGTCGTCGCGGCAGATCGAACCAGGGCGGCGTTGCCCAAAATCCGCTCGAGCACATCTGCCACATCTGCGCCATGAAGTTCTCGCTGCGCAGCAGCCTCCAGGCCCATCTGCGGCGTCATCTGGGCCAGCGTACGCACGCGTGCAGCGACTGCCCCAAGAAGTTCTTCAACTCGACAGCGCTGCAAGTGCATCGGCGCAGCCACACCAAGGAGCTGCCGTACGTGTGCGAGCACTGCGCCCGGGGATTCGTGAATGCCAGCAAACTGAATCAGCATGTCAAGCGGCACACGGAGAAGCGCGATCATCCCTGCAGTCGCTGCGACAAGGCATTCTATACGGCCCACGAGCGGGATCGTCATATGCGCGCCCATCTCAACATCCGGGACAAGGTGTGCCCGTATTGCGCGCGCGCCTTTGTCGTCGGCAGCGCCTACTACGCCCACCTGAATCTCCATCGGGGCGAGAAGCGATACAGCTGCTCCGGCTGTGGCCAGAGGTTCGCCCAGTATGCGGGCCTCTACAAGCATCGCAAGCGCTGCACGGCCATCCAACTGAAGGAACTTAAGGAGCAGTGA
- Protein Sequence
- MTPAIETAAGPTGGPVTAEEMRQRCGTVYTWNCAGELYGIECELCEERPLCALDEFAEHMELWHSDWQQSPVDELMLEVLAEQSSGGEVNELKQQLVQELNALDAAHHHNQQLTETLQLNNQIKFDRNSQLPEVEPQKLTSDHVQQLIELYQAHPRLWDQSHPEFRDVDRGRESWQQITDAWSAHCGRSFSVTDVRIRISTLCQRFLKQRERVAAEGELEESIKFVHYDQLRFLCAQQSLLKRQEHFTHENRKLLEIYEHYPILWHNAHKRLRCAETVRQRHEAHRGLQLALRMCGVKLSGLAIQRRLQSLRKRYRLEKIRYLHSVVEGKQAEFVSGFEHYAEMEFLHKHIDPYVCASCGKIFENLVSHQAHVQGNCEEQALAGMETDHETEATVGELMALMEMDQELEQEVEVELEAEPKEQLPEEQQLPHIKEHTELLEAEPEQAIVATQPQPADEITTRLHSLAAACAADVQPAASGAGGEDLTETSSEGSLSPGVQLRMRLSLELTHRLIELYQAQPHLWDPNHLDYHDRQLRRQAWHGIAAELNAYAGCPGRFSWQMLHRKLTDYIKYYRRERQREALAVEGSGEGTRWGFYEAFSFLDDVVPINCVLQKSLQQRDSNLKIIQVYQSYEQLWCTNHPDYTKRKQRLRHLESLCTRLQEECNLQISVERLKSRLIEFRCQYRQCKEARQAAMRRGEDWQPSYEYYAPLQFLELHVSPFGCGHCSASFKRRSDYLRHQRNVHPEQLQQQQQEEQQQEQEQELPRQRRRGRSNQGGVAQNPLEHICHICAMKFSLRSSLQAHLRRHLGQRTHACSDCPKKFFNSTALQVHRRSHTKELPYVCEHCARGFVNASKLNQHVKRHTEKRDHPCSRCDKAFYTAHERDRHMRAHLNIRDKVCPYCARAFVVGSAYYAHLNLHRGEKRYSCSGCGQRFAQYAGLYKHRKRCTAIQLKELKEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00506341;
- 90% Identity
- iTF_00551108; iTF_00617127; iTF_00475440; iTF_00526804; iTF_00534805; iTF_00506341; iTF_00491006;
- 80% Identity
- -