Dlac012869.1
Basic Information
- Insect
- Drosophila lacicola
- Gene Symbol
- -
- Assembly
- GCA_035045355.1
- Location
- JAWNPB010000252.1:2508315-2510540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.031 2.1 9.1 0.7 2 23 331 353 330 353 0.96 2 10 2.2 1.5e+02 3.3 0.2 6 23 363 380 363 380 0.97 3 10 1.5e-05 0.001 19.5 0.9 1 23 386 408 386 408 0.98 4 10 0.00054 0.037 14.6 2.4 1 21 421 441 421 444 0.87 5 10 5.9e-05 0.004 17.6 0.7 1 23 452 475 452 475 0.97 6 10 2.8e-05 0.0019 18.6 1.0 3 23 483 504 481 504 0.92 7 10 0.003 0.21 12.3 0.4 2 23 516 538 515 538 0.97 8 10 0.00091 0.062 13.9 7.0 1 23 545 568 545 568 0.93 9 10 2.6e-06 0.00018 21.9 1.2 1 23 574 596 574 596 0.98 10 10 6.3e-05 0.0043 17.5 1.4 1 23 602 625 602 625 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCTTGCGTGCTCTGTTTTGGGTGCTGCAAGAACGGCGAATCATATAAGATATTTTCCGAAGCTGGTTCGCGGCTCAACATttgcaaaacaataaacaaacacttTTGGCTCGAGCTGAGCAGCGCAGGGGGCGAGCATGAGGAAATTTGCCGCCAGTGCTGGGAGTGCGTGAGCAGCTTCAATGAGTTCTACCAACGCGTGTACAATGCCCACCAGGAACGACGCTGCGATGTCAAAAATGTGCCCATCGAGTTCTGCGACGAGTCGGAGGCAGCCAATCCTCTTGCCTTTGGTGGTGAACTGGATGCCCTGGCCGAGGATTTCTTTGCAACTGGCGATGTCAAGGTGGAGGTGAACGAATTGGAGCCGCTGCCCAAGCTTGAGATGCTCGAGGAGCCGCTGCTGGCAGAGAAGAGCAGTGCTACGAAACGCAGCTGTGCTGATTATCCAGCCAGTGCTAAGCGGCGCATCAAAAACGAGCAGCTGACGCTCGCCAGTGACTCGGATGGAGACATACCGTTGGCTGAGTTCCTGGACCTAAAAACACCTGCAAAGCAAGCAGCAGCGACCGAGAAACCAATTGCAGCCAAGGGCAGGCAGCTGCGCCGGAGCTCTCGACGTGGACGCCGATCAAGAACGCCGCCAGAATCGCCGCCGACCTGCATGAAGAGGGAATTCGAATCGGAAGATGAGCATGATAATGATGACAGGGAGTTTGTGGCAGCCGAGGCATTGCTGGGCACCGAAGACAGTGCCAGTTCCAGCGAGAGCAGCGACAGTGACTCGGGCAATAGTTTGCCGGACATTGAGCCAGAGGAACGCTATGCAGAAATACCCAAACGCATTGTAGTCAAGCCCAAAAAGTATCGCAAGCGTCCCAAGCCGTTGGTGCCGCCGGTGCGCATGAGCCGGGAGGAGATCGAGAAGCGCAAAGCACAACAAAACGAATTCGATGAGattatatttgactttttcaaGAAGCTGCCATGTCACATGTGCAATCTGCTGGTGCCCAACTTCGGCGACATGCGTCGCCATCAGCGCATGTCCCACAACATTGAGAGTGGCTTTATATCCTGCTGTGGTCGCAAGTTTCACATACGTCGGGCTCTGGCTGAGCACGTACTGGTGCACAAGAATCCGGAGCATTTTATGTGCACCCAATGCGGCCGCGTCTTTCAGGACTCGAAAACGCTTGAGACGCACGAGCAAACGCACACGAATCCTCAAGCGGATGCGAAGGATAAGCGCATGTACCAGTGCGACAAGTGTCCCAAGTGCTTCACCACAAAGGCTGCGGTCGAGTATCACAATGTGTCCAAGCATGTGCCCAAGTCGGATTTCAAATACACCTGTCCCGAGTGCAATAAGAAGGTGCCCACAGAGCGCAAGCTAAAGGAACATCTACGCTATATGCACGATCCAGAGACTGCCATCATCTGCGATAAGTGCGGCAAAACATTACGCTCTCAGGCTAATCTGAAGAAACACCACGAACTGGAGCATTCCGATAAGCCACGCCCCAAGCCCGACCCAGTGCAGTGCGAGATATGCGGCACTTGGCTGCGCCATTTGTCCGGCCTCAAGCAGCACATGAGCACAGTGCACGAACCGCCGGGCGGGGAGCATCGCTGTCACATCTGCGACAAAAAGTCGACCAACTCGCGCGCACTCAAACGCCATATCTACCATAATCATCAGTGCGAAAGAAAGTTCCGCTGCACCATGTGCGAGAAGGCCTTCAAGCGGCCGCAGGATTTGAGAGAACACACTTCCACGCACACGGGCGAGGTGTTGTACACCTGTCCCAATTGCCCGCAGACGTTCTTTTCGAATGCCAACATGTACAAGCATCGGCAGCGCTTGCATCGCGCCGAATGGGAGGCGGATCGCAAGAAGCCGCTGCCGCCCAACATAATGCAGCAAGCGGTGGGCGCAACAACGGCCATGAAGAAGCGTCAGACCAGCAGCGCCGGCCCAGCGCTATTCACGCAACCCGCCGCTGAGCCCAGCGCGGATGCCGCGAAGCAGGAATCACAACTGCAATAG
- Protein Sequence
- MAACVLCFGCCKNGESYKIFSEAGSRLNICKTINKHFWLELSSAGGEHEEICRQCWECVSSFNEFYQRVYNAHQERRCDVKNVPIEFCDESEAANPLAFGGELDALAEDFFATGDVKVEVNELEPLPKLEMLEEPLLAEKSSATKRSCADYPASAKRRIKNEQLTLASDSDGDIPLAEFLDLKTPAKQAAATEKPIAAKGRQLRRSSRRGRRSRTPPESPPTCMKREFESEDEHDNDDREFVAAEALLGTEDSASSSESSDSDSGNSLPDIEPEERYAEIPKRIVVKPKKYRKRPKPLVPPVRMSREEIEKRKAQQNEFDEIIFDFFKKLPCHMCNLLVPNFGDMRRHQRMSHNIESGFISCCGRKFHIRRALAEHVLVHKNPEHFMCTQCGRVFQDSKTLETHEQTHTNPQADAKDKRMYQCDKCPKCFTTKAAVEYHNVSKHVPKSDFKYTCPECNKKVPTERKLKEHLRYMHDPETAIICDKCGKTLRSQANLKKHHELEHSDKPRPKPDPVQCEICGTWLRHLSGLKQHMSTVHEPPGGEHRCHICDKKSTNSRALKRHIYHNHQCERKFRCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPQTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMQQAVGATTAMKKRQTSSAGPALFTQPAAEPSADAAKQESQLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00508523;
- 90% Identity
- iTF_00582434;
- 80% Identity
- -