Basic Information

Insect: Drosophila lacertosa
Gene Symbol: salm
Assembly: GCA_004143845.1
Location: SCDZ01000557.1:23087-31601[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.6e-06 0.00037 21.0 0.9 1 23 474 496 474 496 0.98

2 7 7.1e-06 0.00074 20.0 2.1 1 23 502 524 502 524 0.98

3 7 0.012 1.3 9.9 1.5 2 23 897 918 896 918 0.98

4 7 5.1e-08 5.3e-06 26.8 0.5 1 23 924 946 924 946 0.98

5 7 0.00016 0.016 15.8 2.3 1 23 956 978 956 978 0.98

6 7 0.021 2.2 9.1 2.9 2 23 1366 1387 1365 1387 0.97

7 7 2e-08 2.1e-06 28.1 1.3 1 23 1393 1415 1393 1415 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.6e-06	0.00037	21.0	0.9	1	23	474	496	474	496	0.98
2	7	7.1e-06	0.00074	20.0	2.1	1	23	502	524	502	524	0.98
3	7	0.012	1.3	9.9	1.5	2	23	897	918	896	918	0.98
4	7	5.1e-08	5.3e-06	26.8	0.5	1	23	924	946	924	946	0.98
5	7	0.00016	0.016	15.8	2.3	1	23	956	978	956	978	0.98
6	7	0.021	2.2	9.1	2.9	2	23	1366	1387	1365	1387	0.97
7	7	2e-08	2.1e-06	28.1	1.3	1	23	1393	1415	1393	1415	0.99

Sequence Information

Coding Sequence: ATGCGTAGTGACTTCAAGGATAATCACCAGGAgaccataaataaaatgatacaATTTGGTACCGTTAAATATGGCATTGTCAAACAATTGAAGGATCACGCCAGAAGCGCAGAGAAAGACATAACGAGTGACCAGGAAGATAATGGCGCGTGCTCGCCGCTGACAACTGCGACGGCTAGCGCTAGTGCCGGTAACAGTCCTTGTCCAAGTCGCAGTCCACAGCACCATAACGTGGACGAAGGAGAAAGGGAATCGGCTCAAGGGTCAGATAAGAAACTGGAAGTAGATGTGAGTGCCCACTCCAAAGCACATTTGATTGAAGAGCAGCAAATAGTAAATAATGCCAAAAATACTATCGAGGATCACAatcataataacaacaatataagCAAAGTGGTCATGACAAAACCGTCCGTGGAACACGAGGTCGAGCAGAACGCGAATATTAACGCTTCAATGCCGAATTCACCTACTGCAGCAACTTCCCCAATGGAGGAGGCCGTCCAGTCTATATCTCTTGAAAAGGAGTTGGATGTGGATGTAGAGATGCAAGAGGAGGGAGCGCTGCAAGAAAGGGCCTTAAATACGCCACCAGAAAACAACGCCGCGAATGATAGTCCAGCAGCACAACAATTTGGAGCTACACCTGTCACCCTGGAAGCCATACAAAACATGCAGATGGCTATTGCACAGTTTGCTGCAAAGACAATTGCGAATGGCGCCTCCGGAACAGATAATGAAGCAGCCATGAAGCAGCTGGCCTTCTTGCAGCAGACGCTTTTTAatctgcaacaacagcaactttttCAGATACAGCTAATACAGCAATTACAATCACAGCTAGCTCTTAACCAGGTCAAGCAAAACGAAGAGGAAGGCGACGAGGAAATCGAGCCGGAGGAGCGTGACGATGGCGAAACGGATACTTATGAAGAGGAGGAACGCATAGCTGACATGGAACTTCGACAGAAGGCTGAGGCACGTATGGCCGAGTCCAAGGCGCGCCAGCATCTAATAAACGCGGGTGTGCCCTTGCGCGAACGATCCAGATCCACCTCTCCAGTAGCCGCGACTTTTTCAACAGCATCGTTAAAACGCAAACGGGGAGAAGACGCCAGCATAAAGCCGCCGAGCGCTCCCGTAAAGCATTTCGGTGAGAACGAGAGCGCACAAGATGCGCTGTCTAAGCTCAAGGAAATGGAAAACATGCCGCTACCTTTTGGTTCGAATTTGGCTTCAAGCATTATCACAAACCATGACGATCTTCCAGAGCCAAATTCATTGGATTTGCTACAGAAGCGCGCCCAAGAAGTGTTGGATTCCGCCTCACAAGGAATTCTGGCTAATAATATGGCCGATGACTTTGCTTTTGGTGACAAGTCCAGCGATGGTAAGGGTCGAAATGAGCCATTTTTCAAACACCGCTGCAGATACTGTGGTAAGGTTTTCGGCTCTGATTCCGCGCTTCAAATACACATTCGCTCTCATACGGGTGAGCGGCCCTTTAAATGTAACGTCTGCGGAAGTCGCTTTACAACCAAAGGCAATCTCAAGGTACATTTTCAGCGGCATGCACAAAAGTTTCCACATGTGCCCATGAATGCAACGCCTATACCGGAGCATATGGACAAGTTCCATCCGCCTCTACTGGATCAAATGTCCCCGGACAGTTCACCTACGCAGTCCCCAGCACCTAGTCTACTGCCGACATCAACGTCCGCGTTAGCACAGGTTCAGCCCTCGATGTCGTTTGCCTCAAGTCCTGTATTCCCTGGATTGCAGGGAATTTACCGTCCTCCTATTGAGCTGCTTAAATCGCtaggcgctgctgctggcagtaCCGCCGGCCTACCGCATTCTTATTTTCCCCAAATGCCTGGATTGGGTGCGGCTCTGAAACATACCCAACAACAGAATCAGGACATGCCTACGGACTTGCGCAAGTCCTCAGGTTCCAGCTCACCTCATATAGAAGAAGACAATGTAACAGCGGTAAAAATGCCTGTTAAAACAGAACTGCTTGAGGAGGAAAAGATGGAGCACGAGGTAGATACTATGAAAGCTGAATGCCCTGAGCAAGATCGACAATCAGAGCCACTGCCATTTGAGGTTCGGATTAAAGAGGAACGCGTCGAGGAAGTGCAGGAACAAGATCCCGAGCAGACGGCACTGTCGGAAGTGCTTCGTCCTCGTACCCCGACACCCTCATCTTCAACAGTGCTGCATACGCCACCGATCATACAGCGACACCATCACCACGTTCATACCCACTCCGGCGCAATGCTCACTTATCCGCCAGTGGTGCAGCCCATCCAACCACCTGCTATCATGCATGCGCAGTGCTCACCTGGTTCACAAACGCATTTGGATCATTTGCCGACGCCTGGACAGCTGCCGCCCACGATGCCTCAGCGCGATGAGTTCTTTGTAGAGCGCTTTCCACTTAATTTTACCACCAAGACACTTTCGCCAGAGCATCATTCGCCTATACGATCACCCGccgcccatgcccatgcccacaTTCCACGTTCCCCCTTCTTCAATCCGATTAAACATGAGATGGCTGCCCTGCTGCCACGTCCTCATAGCAATGACAATTCGTGGGAGAATTTCATAGAGGTATCGAACACCTCGGAGACCATGAAGCTTAAAGAgctaatgaaaaacaaaaagatcaGTGATCCTAATCAGTGCGTTGTTTGTGATCGCGTGCTCTCCTGTAAGAGCGCTCTTCAAATGCActaccgcacacacacaggtgaACGACCTTTCAAGTGTCGAATTTGCGGCCGTGCCTTCACAACCAAAGGCAATCTAAAAACTCATATGGCTGTGCACAAGATACGACCGCCCATGCGTAACTTCCATCAGTGTCCTGTGTGTCACAAGAAGTACTCAAATGCGCTCGTATTGCAACAGCATATACGATTGCACACGGGCGAGCCAACCGACCTGACACCTGAGCAAATACAGGCTGCCGAAATACGTGATCCGCCGCCATCAATGATGCCTGGTCACTTTATGAATCCCTTTGCAGCGGCTGCTTTTCACTTCGGTGGCATTCCAACTGGCGGTCCTATTGGTCCGCCTGGAGCGCCGGGATTACACGGTAGTTCTCACAACGGCGCTTTAGGCTCGGAATCGTCGCAGGGTGATCTAGAAGACAATATGGATTGCGGCGATGGAGATGAGTTTGACGATGCTTCCTCAGAGCACTTGTCTAATAGCAATGATCTCCTAACCGAGGAGCGTCCGCGTTCTGGCGATGATTTTAAGTCGCTTCTCTTTGAGCAGAAACTGCGTATCGATCCAACGGGTATAGTCAATATTAATAGTCATCAGCGTCCTCGCTCTGCCGCCAGCAATGCAAATTCTACTGGGTCCGCGTCGGCCTCGCCTTCGGTACCCACCAGTCCGAGCTCGTTTCCTAAACCTAGCTGCTCACCAGTTGGTCCCGCATCGGACACTTCACAAGGAGCTCTCGATCTGACGCCACGCGCTGTTCCCCCACCTCTTGCCTCGTCTAGCTCGCGCTCACCGCTACCGCTGCCCATTGAGCGAAAGGAGAAGACAATTAGTCCGCTTAGCCAGCAGCCGTTGGTACGGAGCCCTACTTCTCTAATTTCCTCACAACTGCCACCATCCGTGGGAATTGATTGTCTTCCTCCAGGACTACAGCATCATctacaacagcatcagcatctgATGCAGCAACAGGCGGCtgtggccgcagcagcagccgcacagcatcatcatcaccaaATGCAGCAACATGCGGCCGCACTCCACCAGCATCAGGAACAACTTCGCCGCGAGGCTCAAGAAGTGCAACAAAaagcggctgcagcagccgtTGCTCAGCGGCAGGCTTCGCCTCAGCCATCGTCCCGGTCCGGTGACTCATCAGCTGGTCCACCTGCCCAGCCCAATCCGCTAATTGCGACGCGTCCGCCTTTCGGAATGTTTCCCAATTTGCCAATTTTCCCTCCAGCCACCACACAGAACATGTGCAATGCAATGAACCAGATCGCGCAATCCGTAATGCCAGCAGCACCATTTAATCCGCTAGCATTAAGTGGAGTGCGCGGCAGCACCACTTGCGGCATATGCTACAAGACATTCCCTTGCCATTCGGCGCTTGAGATTCACTACAGGAGTCATACTAAGGAGCGACCCTTCAAGTGTAACATATGCGATCGGGGCTTTACAACTAAGGGCAACCTCAAGCAGCACATGTTGACACACAAGATACGCGATATGGAACAAGAGACTTTCAGAAATCGTGCTGTAAAGTATATGAATGAGTGGAGCGATGATCGTGAGTAA
Protein Sequence: MRSDFKDNHQETINKMIQFGTVKYGIVKQLKDHARSAEKDITSDQEDNGACSPLTTATASASAGNSPCPSRSPQHHNVDEGERESAQGSDKKLEVDVSAHSKAHLIEEQQIVNNAKNTIEDHNHNNNNISKVVMTKPSVEHEVEQNANINASMPNSPTAATSPMEEAVQSISLEKELDVDVEMQEEGALQERALNTPPENNAANDSPAAQQFGATPVTLEAIQNMQMAIAQFAAKTIANGASGTDNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQVKQNEEEGDEEIEPEERDDGETDTYEEEERIADMELRQKAEARMAESKARQHLINAGVPLRERSRSTSPVAATFSTASLKRKRGEDASIKPPSAPVKHFGENESAQDALSKLKEMENMPLPFGSNLASSIITNHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFGDKSSDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTQSPAPSLLPTSTSALAQVQPSMSFASSPVFPGLQGIYRPPIELLKSLGAAAGSTAGLPHSYFPQMPGLGAALKHTQQQNQDMPTDLRKSSGSSSPHIEEDNVTAVKMPVKTELLEEEKMEHEVDTMKAECPEQDRQSEPLPFEVRIKEERVEEVQEQDPEQTALSEVLRPRTPTPSSSTVLHTPPIIQRHHHHVHTHSGAMLTYPPVVQPIQPPAIMHAQCSPGSQTHLDHLPTPGQLPPTMPQRDEFFVERFPLNFTTKTLSPEHHSPIRSPAAHAHAHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGGIPTGGPIGPPGAPGLHGSSHNGALGSESSQGDLEDNMDCGDGDEFDDASSEHLSNSNDLLTEERPRSGDDFKSLLFEQKLRIDPTGIVNINSHQRPRSAASNANSTGSASASPSVPTSPSSFPKPSCSPVGPASDTSQGALDLTPRAVPPPLASSSSRSPLPLPIERKEKTISPLSQQPLVRSPTSLISSQLPPSVGIDCLPPGLQHHLQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAAALHQHQEQLRREAQEVQQKAAAAAVAQRQASPQPSSRSGDSSAGPPAQPNPLIATRPPFGMFPNLPIFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNEWSDDRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00534052;
90% Identity: iTF_00496055;
80% Identity: -