Dlac019332.1
Basic Information
- Insect
- Drosophila lacertosa
- Gene Symbol
- -
- Assembly
- GCA_004143845.1
- Location
- SCDZ01000157.1:180464-184088[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.47 49 4.9 5.4 2 23 325 347 324 347 0.96 2 18 1.8 1.9e+02 3.0 0.0 1 23 354 379 354 379 0.90 3 18 0.095 9.9 7.1 4.2 3 23 391 411 390 411 0.93 4 18 4.3 4.5e+02 1.8 3.0 2 17 422 437 421 448 0.75 5 18 0.019 2 9.3 0.4 3 23 481 501 479 501 0.95 6 18 0.0013 0.14 12.9 0.7 1 23 509 532 509 532 0.98 7 18 0.00012 0.012 16.2 0.3 2 23 537 558 536 558 0.97 8 18 2.1 2.2e+02 2.8 0.1 1 20 566 585 566 587 0.87 9 18 7.4e-05 0.0077 16.8 0.4 1 22 606 627 606 630 0.90 10 18 0.21 22 6.0 2.4 1 21 635 655 635 656 0.92 11 18 0.0032 0.33 11.7 0.5 1 23 675 700 675 700 0.97 12 18 0.0088 0.92 10.3 1.4 2 23 716 738 715 738 0.93 13 18 0.025 2.7 8.9 0.2 3 23 745 766 743 766 0.92 14 18 0.0015 0.16 12.7 0.2 2 23 770 792 769 792 0.96 15 18 1.3e-05 0.0014 19.2 2.1 1 23 798 820 798 820 0.98 16 18 0.0069 0.72 10.6 0.9 1 23 824 847 824 847 0.93 17 18 2e-05 0.002 18.7 2.8 1 23 853 876 853 876 0.97 18 18 0.00032 0.034 14.8 0.6 1 23 880 908 880 908 0.89
Sequence Information
- Coding Sequence
- ATGTCGgaaaattcgaaaataaaCAGTGAGAATGGACCTAGCTGCCTGCATTGCAGAGTGTACAATTCAAAACATCAATATCAGGAAATATTTGATGAAGTGGGCATCGAAATTGAACTCGCCGATCTGCTGgccaaatattttcaaatcgTTGTCAAGCCCGATTCCCAAAACTCGCAGTTGCTGTGCCAGGAATGCGTAAACACGCTAATACGATTCTTCGATATAGACGAGCTGCAGCGCGAGCAGGATGCCGCCAACGCGGCCAAAAAGAAGATCAAAGAGGCTGGCGCTCTTGTGGAACCCCTAcctccaccgccgccgcccccAGTTGCGACCAAAAAGAATGTAAAACCCGCAAAAAAGCAGACGCCGCCGCCAAAAATTACGTCTGCCGCAGTGAAAAGGTCGGCAGCGCCAGTTAAAACGGTGAAGCTAACACCGGCTGTTGCAGCCACTGCTCCCGAACCCGTCGCCTTACGCATGACGAGAGCTCGAAGCGCAGCCCCAAAACGTTTGcccattaaattgaaaaaagtgGTCAAGGCGAGTGATGCGCCCGTTGAACAGGAACAGATAAGCGCACTCATCCGCGACATTCTCGACGATGAGGAGACGCGGGCCGATGATAAATTTGCCGAGGCAGCGGCCACAGTGCGGCAGTTGGAGaagcaaacagcagctgccgaGCAAAAGGAGGAAGAACAGGAAAACAATGATGAGCTAGAGTTTTTGCTAGAACACGATGACGGTTCCTCGGACTCGGATGTGCGTCACTTCAAAGTGGAGCGCAAAAACAAAGTCGCCACTTTGCAGTCACAAAATGAAAGTCAAAGCGAGGATGAATCATTTAAAGTCGAGCCCTTCAATTTCGTGTTGATTAAAGAATCTGATAACATTGGCGATCTGTACGAGTATTTGTCGACTGTGGTCAAGACCAGCTTTGAGACCTTGCAATTCGATTGGAACGTTGTTTGCCGTCATTGCTCGCTAAAGTGCTCCAAATATGAGAATTTCTTCAGTCACATTTTAAAGCGCCATCAGCTGGCAAATGAACGCTACAAATGTCCCATTGAGGGTTGCGGCGCTGAGTTGCAGGGACGAAAATGGCTGGCAATGCATTTGGTGGTGCTGCATGCACCAGTTGCGGAAATACCTATTTACGGCTGCTGTCCCGAGTGCAACATGACCTTCTCAAACATATTGCAGTACAACAAGCATTCCTGCGCTCACGTTATCAAGAAACGTCGCGGCATTCGCTTGTATTGTGAGATGTGCGGCCTTGAGTTTCCCTCCTGGAAACGCTTTAATTTCCACAATCAATTTCATTTGGAGCGACATAGGCCGCGTGCCTGCTTTGTGTGCAGCTATGCGGACACGAACATCGATGATTTGTTTCACCATTTGTACTATGCACACGAACCCGAGGGCACGCTCTTCTGTGACCTCTGTGATCGCAACTTTCGTGATCCCGTCGTCTTTATGGAGCACAACAAGTCGCACGCCAATGTCAGCAGCACCACCTACAGCTGCTCTGAATGCAGCTCGAATTTTGAGACACGCGGTCGTCTGAATAGTCATCTGCGCTCCGCACATGGCAGCGTCATCAGCTGCGAGCTGTGCAACCGCGAATTTGCCACAGAGGCCACCTACAATCTGCACATGAAGACGCATCTGATTATAGAGCGCGAGGTGCATGTGTGCAACAATTGCGGACTCCTCAGCGAGAACAATGAGAAGATGATGTCCCACGTCATGGCTGAGGATTCGGCGTGCTTTGGCATGGAAGTTTATGTGGAACTGTTGCGTGATGCGTATGTCTGTGAATATTGCTCAGCGTACTTTAAGCAGAAGAGCGATTTGCGCGCACATCGCGATTCGGGCGTACACAAGGATGGTTTATTCTTTTGTCAGCCGTGTGACAAGGAATTTACCGACATGAAATTCTATCGTCATCACTTGCGCAACTTTCAGCAACAGCGCACGGATATGGCGCATCGCAAGCTcgaaatatgtttgtattacATGTGTGATTATGAGGATTGTACTGAAGCTTACATCAATTGGAATTCTctgtacacacacaagcgACGTTCGCACGATGGCCTCGAGAAAAACGAGCCCAAGACCAAAGATAACGAATGGATCTGTCAGTTCTGTCAGAAAGTGTGCCGCTCAAAAATGTCGCTTTCAGTGCATGTGGCGCGCAGTCACAACAACAATAATGTGATTTGCCCGCTGTGCAAGGCGTCCTATAAGGATGATGAAGCACTTAAAAGTCACCACGCTTATTGGCACGAGTCCATTGAATGTCCGCTTTGCCTTAAAGTGGTTAAGAATCGAAGGAATTTTGATACCCACATGAATGTTGTGCACTCAAACAACAAGCGATACTCGTGCAGTGTCTGCCAAAAAGGATTCTATCACAAAAGCGAAATGGAGGCGCATCAGCGGCTGCATACACAATCCTACAGCTGCGAACAGTGCAGCTTCACGACGCGCAACAAGAAGTCGCTCTCTGTGCACGTTTTGGGACAGCACTTCAAACGCTTTGCGTTCCACTGCAAAATCTGCGATAAGCGCTTTGGACGTCGCCAGGGCTTATCGAATCACATGCAACGGGTGCACGGCTCCAGATATACCTGTCGTGATTTTTTTGACGGCGGCTGCAGCAAATCCTTCAGCTCGACGACGCAGCTTAACGTGCATGTGCGCAAGGCGCACAATGGCAGCATATTTCTTGAGGATGATCCGTCTAAaatggaggaggaggatgcTGACGATCTGCTTGACGAGGACTCAACCAGCGACGGGCCGTCGACATCAAAGAAACGCTGCATACGCCTCAATGGCAGTACACATATTGAGTTCATTGGCGATGCAACGGCTGGCGAGGAGAACGAGAGCCTTGCTGGCTCCGAAATCTTTGAGGAATTTCAGGAGATTAAAGGCTCAATAGAGCCgccagcaaagaaaaaagcaaaggcaaaaaacgaataa
- Protein Sequence
- MSENSKINSENGPSCLHCRVYNSKHQYQEIFDEVGIEIELADLLAKYFQIVVKPDSQNSQLLCQECVNTLIRFFDIDELQREQDAANAAKKKIKEAGALVEPLPPPPPPPVATKKNVKPAKKQTPPPKITSAAVKRSAAPVKTVKLTPAVAATAPEPVALRMTRARSAAPKRLPIKLKKVVKASDAPVEQEQISALIRDILDDEETRADDKFAEAAATVRQLEKQTAAAEQKEEEQENNDELEFLLEHDDGSSDSDVRHFKVERKNKVATLQSQNESQSEDESFKVEPFNFVLIKESDNIGDLYEYLSTVVKTSFETLQFDWNVVCRHCSLKCSKYENFFSHILKRHQLANERYKCPIEGCGAELQGRKWLAMHLVVLHAPVAEIPIYGCCPECNMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYADTNIDDLFHHLYYAHEPEGTLFCDLCDRNFRDPVVFMEHNKSHANVSSTTYSCSECSSNFETRGRLNSHLRSAHGSVISCELCNREFATEATYNLHMKTHLIIEREVHVCNNCGLLSENNEKMMSHVMAEDSACFGMEVYVELLRDAYVCEYCSAYFKQKSDLRAHRDSGVHKDGLFFCQPCDKEFTDMKFYRHHLRNFQQQRTDMAHRKLEICLYYMCDYEDCTEAYINWNSLYTHKRRSHDGLEKNEPKTKDNEWICQFCQKVCRSKMSLSVHVARSHNNNNVICPLCKASYKDDEALKSHHAYWHESIECPLCLKVVKNRRNFDTHMNVVHSNNKRYSCSVCQKGFYHKSEMEAHQRLHTQSYSCEQCSFTTRNKKSLSVHVLGQHFKRFAFHCKICDKRFGRRQGLSNHMQRVHGSRYTCRDFFDGGCSKSFSSTTQLNVHVRKAHNGSIFLEDDPSKMEEEDADDLLDEDSTSDGPSTSKKRCIRLNGSTHIEFIGDATAGEENESLAGSEIFEEFQEIKGSIEPPAKKKAKAKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00589011;
- 90% Identity
- -
- 80% Identity
- -