Dkur010626.1
Basic Information
- Insect
- Drosophila kurseongensis
- Gene Symbol
- -
- Assembly
- GCA_018153305.1
- Location
- JAECXX010000141.1:8692198-8693700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6e-05 0.002 18.5 1.1 1 20 143 162 143 165 0.92 2 13 0.017 1.2 9.6 3.3 1 23 168 190 168 190 0.97 3 13 0.00023 0.017 15.5 0.9 1 23 194 216 194 216 0.98 4 13 0.0013 0.094 13.2 6.9 1 23 222 244 222 244 0.98 5 13 5.3e-05 0.0039 17.5 3.5 1 23 253 275 253 275 0.99 6 13 0.0002 0.015 15.7 1.5 1 23 278 300 278 300 0.98 7 13 4e-05 0.003 17.9 0.8 2 23 307 328 306 328 0.97 8 13 3.8e-06 0.00028 21.1 1.8 1 23 334 357 334 357 0.97 9 13 2.9e-07 2.2e-05 24.6 0.7 1 23 363 385 363 385 0.98 10 13 6.3e-05 0.0046 17.3 4.5 1 23 391 413 391 413 0.98 11 13 3.6e-05 0.0027 18.0 1.3 1 23 419 441 419 441 0.97 12 13 0.00012 0.0088 16.4 3.7 1 23 446 468 446 468 0.98 13 13 5.5e-06 0.0004 20.6 0.1 1 23 474 496 474 496 0.98
Sequence Information
- Coding Sequence
- ATGGAGTCAAAAACTGTCTTCGGTAAGTTGAAAGAGGAATTGCAAGATGAAGAATTCCTGGATGAGGACTTACTTGTTGAAGAAGTATACGATTTAGAAGACTATGAGATTGAGGTATTGGACGGTGAAGAAATACCTCCTCAGTTATTAGATTTTCAAGTTAAGAAGGAGTCGGACTCCGAAGAGAAGGTAGAAGTGATAGAAGGGATATCCTATAACACTGTAGATTTCGAAGTCAAGGAAGAAAAAATCGAAGAAGAGGAATCCCAGTTTCAAATAGTTAACGAACCCATTGAAAATGATGAAATCGACAATGTAGTAGTCAGTAATATGGATCAATCTGACATCCAAGTGAAAAATGAATCAATTGAAGACGTTATCATCGAGGAAGAAGCGATCCCGCCAACAGTCGCTGAAACTAGGGAATTCAAATGTAATTACTGCCCGGAATCCTTCACGGATAACATCTATCTAAGTCGTCACACTTGGACGCATGCACCCTTTCACTGCTCCTATTGTTTGAGGACTTATTCAACAGATGCAGGCTTCCAGTTACACCTGCGATTCCACAAGCCACCCTACCAATGCGATCAGTGCTCGGAGACTTTTGCGTTACGCGGTTCTCTTGATCGGCACAAGCAGAAGCACGAGGCTGAATTAGTTCACCAGTGTTCCCACTGCAAACAGCTTTTCAAAAAGAAAGGCTATCTTGACAACCACTTGCGAACCCACTCAATCGAGCGACCCTTGCGTCCCTTCAAGTGTGATCATTGCCCGTCGGCTTTCGAGAAACATGCGTATCTCAAGAAACACATCCGAATTCACAACCTCCACAAGTGCACCCAGTGCCCGGCAGCTCTGCCAACGAAACTGCATCTGGAGCGTCACATGGAAACTCACACAGGACCCAGGCCTAACAAGTGTGCCAAATGTGAGAGGGTCTTCAGGGATCAAAAAGAACTCAGTCAGCACTTGGTAACGCACTCGCCAAAAAATGGCTTCGAGTGTTTAGAGTGCTCCAAGACTTTCACCCTGAAGTCATCTCTTACGAATCACCTGAAGCGTCTGCACACAACAGAAACAAAATATAACTGTTCCGACTGCCCAAGATCTTTCAGACTCAAATCAGATCTCAAGTCACACATGCTGATCCACACGGTGGAACAGACCTTCAAGTGTCCATGTTGTCCGAGGTTCTTCAAATATCAGAGCAGTCTCAAGAATCACATGGCAAAGCACTCGGGCTCAGGACACTTTGAGTGCTCCCTATGCTTCAAGACCTTCACCCAGGAATCACTATTTCAGGAACACCTGCTACTGCACGCAGATGGGCCGTACGAGTGCACCCACTGCCCGAAGACATTTTCCACACATAAAATCCTCCTTCAGCACATGGCATCGCACTTTGGAGACAAGCCCTTCCAGTGTGCCCTCTGCCCGAAGGCCTTTGCGCTGAAGTCGAGTCTTGAGACCCACCAAATGATCCACTCGTTCCCCGGCTAA
- Protein Sequence
- MESKTVFGKLKEELQDEEFLDEDLLVEEVYDLEDYEIEVLDGEEIPPQLLDFQVKKESDSEEKVEVIEGISYNTVDFEVKEEKIEEEESQFQIVNEPIENDEIDNVVVSNMDQSDIQVKNESIEDVIIEEEAIPPTVAETREFKCNYCPESFTDNIYLSRHTWTHAPFHCSYCLRTYSTDAGFQLHLRFHKPPYQCDQCSETFALRGSLDRHKQKHEAELVHQCSHCKQLFKKKGYLDNHLRTHSIERPLRPFKCDHCPSAFEKHAYLKKHIRIHNLHKCTQCPAALPTKLHLERHMETHTGPRPNKCAKCERVFRDQKELSQHLVTHSPKNGFECLECSKTFTLKSSLTNHLKRLHTTETKYNCSDCPRSFRLKSDLKSHMLIHTVEQTFKCPCCPRFFKYQSSLKNHMAKHSGSGHFECSLCFKTFTQESLFQEHLLLHADGPYECTHCPKTFSTHKILLQHMASHFGDKPFQCALCPKAFALKSSLETHQMIHSFPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00494523;
- 90% Identity
- -
- 80% Identity
- -