Basic Information

Gene Symbol
ct
Assembly
GCA_018153305.1
Location
JAECXX010000141.1:18608684-18641705[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 5.7e-27 4.9e-23 80.9 0.0 3 72 697 767 695 772 0.95
2 3 5.6e-32 4.9e-28 96.9 0.0 3 77 1171 1246 1169 1248 0.96
3 3 3.4e-31 3e-27 94.4 0.0 3 76 1453 1527 1451 1530 0.96

Sequence Information

Coding Sequence
ATGTCGAACATCGAGGAACTGGACGAGGAGGAGGAGGACGAGGAGGAGGACGAGGACGAGGACGATGAGGAGGAGAATGCCTCGATGCAATCGAACGCTGATGATATGGAGCTGGATGCACCGCAAGAAACCAGAACTGAGCCGACACTTCTGGACGAGCTGCAGCGGTTGAGGGCACTGGAGCAGACGCATTTGGTGCAAATCCAGCGACTGGAGGAGCATCTGGAGGTCAAGCGGCAGCACATAATGCGATTGGAGGCGCGTCTGGACAAGCAGCAGATCAATGAGGCGCTGGCCGAGGCCACCGCCTTGGCGGCCGCTGCTGCCACCAACAACAACAACAACAGCCAGAGCAGCGACAACAACAAGAAGCTGAGCACCGCCACCGCACCGCTGGAAGCCTCCTCATCGATTGGCGATCTGGCAGAGGCCACAAAGACCACCGTTCCGGCGGAGGACGAGGACGAGGACGAGGACCAGGCCATGCTGGTGGACTCCGAGGAGGCGGAGGAGAAGCCGGAGGAGCCGCATCACGAGGAGGACGACGAGGAGGAGGAGGAGGAGGCCGATGATCGGGAGGCGGTCAATGCCACCACCACCGACAGCAACGAGCTCAAAATCAAAAAGGAACAGCACAGTCCGCTGGATCTGAATGTGCTCAGTCCGCAATCGGCCATCGCCGCAGCAGCTGCAGCCGCCGCTGCCGCCGCCTGCGCCAACGACCCCAACAAATTCCAGGCGCTGCTCATCGAGCGGACCAAAGCTCTGGCCGCCGAGGCGCTCAAGAATGGCGCCAGTGATGCCATCAGCGAAGAAATCAACCGAAATGCAGATGATGAAGATGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCAAACGAAACGGAAGCGAAAGCTGGCATTGAACTGGCGCCCAAACAGGAAGTCGAAGACGAGGACGACGACGAGGTCACCAGCGATGAGGTGATCCTGCCGGAGCAACTGGTCAACGATTATTGGCGACGAGGTTTCGAATCGGGGAATGCCAATAGTACCAGCAGCACCGCAATGCCAGGGAGCAAAACGCCAACAATTTATCAAAATCTTAGGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCACCACCATGGACACCACCTGCACGGGCACGGGCACGGCCTGCTGCATCCTTCGGCGGCGCACCACCTGCACCACCAGGCGGCGACCGAGTCCGGTTCGAATTCGAGCACACCGACAACGGGCGTGGGTGCTGGCAACAATCCGAGCAACAATGGGTCGTCGAACAGCAGCAGCAACACGGCCAGCAGCACCACCGCCCAATTGGCCGCCAGTTTGGCCAGCACCCTCAACGGCGGCAAGTCGCTGCTGCAGGAGGACAGCAATGGACTGGCCGCCGCCGCGATGGCCGCCCATGCCCAGCATGCGGCGGCCTTGGGACCGGGCTTTCTGCCCGGCCTGCCGGCCTTTCAATTTGCCGCCGCCCAAGTGGCCGCCGGTGGCGATGGACGGGGTCACTATCGGTTCGCCGACTCGGAACTGCAGTTGCCGCCGGGCGCCTCGATGGCCGGACGGCTGGGTGAGTCGCTGATACCCAAGGGGGATCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTACGCCAACCAGGCACTCGATACCCTGCACATCTCGCGGCGCGTGAGGGAACTGCTGTCGGTGCACAACATTGGCCAGCGGCTGTTCGCCAAGTACATCCTGGGCCTGTCCCAGGGCACCGTCTCCGAGCTGCTGAGCAAACCCAAGCCCTGGGACAAGCTGACGGAGAAGGGGCGCGACAGCTACCGCAAAATGCACGCCTGGGCCTGCGACGACAATGCCGTCATGCTGCTCAAGTCGCTGATACCCAAGAAAGACTCTGGCCTGCCCCAGTACGCGGGTCGCGGAGCCGGCGGCGCTGGCGGCGATGACTCCATGTCGGAGGACCGCATTGCCCACATCCTCAGCGAGGCCTCCTCGCTGATGAAGCAGAGCAGCGTGGCGCAGCAGCATCGGGAGCACCAGGAGCGCCGTGGCCACGAGGACTCGCACAGCAACGAGGACAGCAAGTCGCCGCCCCAGAGCTGCACCTCGCCGTTCTTCAAGGTGGAGCAGCAGCTGAAGCAGCACCAGCACCTCAATCCCGACCAGGCCGCCGCCGCCCAGCAGCGGGAGCGGGAGCGGGACCGGGAGCACCGGGAGCGGGAGCGGGAGCAGCAGCAGCGGCTCCGGCACGAGGACCTGGCCCAGGACAAGATGGCCCGTCTCTACCAGGAGCTCATCGCCCGCACTCCGCGCGAGACGACCTTTCCAAGCTTCCTCTTCTCACCCTCGCTCTTCGGAGGAGCAGCCGGAATGCCGGGAGCGGCCAGCAACGCCTTTCCCGCCATGGCCGATGAGAACATGCGGCACGTCTTCGAGCGGGAGTTCGCCAAGCTGCAGCAGCACCAGCAGCAGCAGGCGGCCCAGGCCCAGTTCCCCAACTTCTCCAGCCTGATGGCCCTGCAGCAGCAGGTGCTCAACGGCGCCCAGGACCTCTCGCTGGCCGCCGCCGCCGCCAAGGACATCAAGCTGAATGGCCAGCGATCCTCGCTGGAGCACAGTGCCGGCAGCAGCAGTTGCTCCAAGGACGGCGAGCGGGACGAGGCGTATCCGAGTTCGCTGCATGGTCGCAAGTCCGAGGGTGGCGGCACACCCGCCCCACCAGCTCCTCCCTCAGCCGGCCAGTCGGTCGGCGGCGGTGTAGTCGGAGGCGGAGCAGCGGGCCCAGTGCCCGGAGCAGGAGCACCCTCGAGCGGAGGAGGAGGAGGAGGCGGCGGAGGAGCCAGCGGGAACTCGGCGGCGCCCAGTCCGCTGAGCAACTCCATCCTGCCACCGGCACTGAGCAGCCAGGGTGAGGAGTTCGCGGCCACGGCGAGTCCGCTGCAGCGGATGGCCTCTATCACCAACTCGCTGATCACCCAGCCGCCGGTGACGCCGCACCACAGCACCCCGCAGCGACCCACCAAGGCGGTCCTGCCGCCGATCACCCAGCAGCAGTTCGACATGTTCAACAACCTGAACACCGAGGACATTGTGCGGCGCGTGAAGGAGGCCCTCTCGCAGTACTCCATCTCGCAGCGGCTGTTCGGCGAGTCCGTGCTGGGGCTGTCCCAGGGATCCGTCTCCGACCTGCTGGCCCGGCCCAAGCCCTGGCACATGCTCACCCAGAAGGGACGCGAGCCCTTCATCCGCATGAAGATGTTCCTGGAGGACGAGAACGCGGTGCACAAGCTGGTGGCCAGCCAGTACAAGATCGCCCCCGAGAAGCTGATGCGGACGGGCAGCTACAGCGGCAGTCCGCAGATGCCGCAGGGATTGGCCAGCAAGATGCAGGCCGCCTCGCTGCCCATGCAGAAGATGATGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCCTCCATCACCAGAGCATGCTCCTCACCTCGCCCGGCCTGCCGCCCCAGCATGCCATCAGTCTGCCCCCGTCGGCGGGCGGCGTCCAGCCGGGCGGTCCCGGCGGACAGGGCAACTCGAGTGCCTTGAACAGCGAAAAGAAGCCGATGCTGATGCCCGTCCATGGCACGAACACCATGCGCAGCCTGCACCAGCACATGTCGCCCACCGTCTACGAGATGGCCGCGCTGACCCAGGACCTGGACACCCACGACATCACCACCAAGATCAAGGAGGCCCTGCTGGCCAACAACATTGGCCAGAAGATATTCGGCGAGGCCGTGCTGGGCCTGTCCCAGGGATCGGTGTCCGAGCTGCTCAGCAAGCCGAAGCCCTGGCACATGCTCTCCATCAAGGGACGGGAGCCCTTCATCCGGATGCAGCTGTGGCTGAGCGATGCCAACAACGTGGAGCGGCTGCAGCTGCTCAAGAACGAGCGGCGGGAGGCCAGCAAGCGGCGGAGGAGCACGGGCCCCAATCAGCAGGACAATAGCAGCGACACCTCCAGCAACGACACCAACGACTTCTACACCAGCAGTCCGGGTCCCGGATCCGTGGGATCGGGCGTGGGCGGGGCACCGCCGAGCAAAAAGCAGCGCGTCCTCTTCTCCGAGGAGCAGAAGGAGGCCCTACGGCTGGCCTTCGCCCTCGATCCATATCCCAATGTGGGCACCATTGAGTTTCTGGCCAACGAACTGGGCCTGGCCACGCGGACGATCACCAACTGGTTCCACAACCATCGCATGCGCTTGAAGCAACAGGTGCCGCACGGTCCCGCCGGCCAGGACAATCCGATTCCGAGTCGCGAGAGCACCAGTGCCACGCCCTTCGATCCCGTCCAGTTCCGCATCCTGCTGCAGCAGCGCCTGGTCGAGCTGCACAAGGAGCGGATGGGCCTGAGCGGCGCCCCCATTCCCTATCCGCCGTACTTTGCCGCCGCCGCCCTGCTCGGACGCAGTCTGGCGGGGATTCCCGGCGCAGCGGCGGCCGCTGGAGCAGCTGCAGCAGCCGCGGCCGTCGGCGCCTCCGGCGGCGATGAGCTGCAGGCCCTCAACCAGGCCTTCAAGGAGCAGATGAGCGGCCTGGACCTGTCGATGCCCACGCTGAAGCGGGAGCGCAGCGACGACTACCAGGACGACCTCGAGCTGGACGGCGGCGGCGGCCATCCGCTGAGCGACAACGAGTCGCTGGAGGGCCAGGAGCCGGAGGACAAGACCACCACCGACTACGAGAAGGCGCTGCACAAGTCCGCCCTGGCCGCCGCCGCCGCCTACATGTCCAATGCGGTGCGCAGCTCGCGCCGCAAGCCCGCCGCCCCCCAGTGGGTGAATCCCGCCGGGGCGGTGACCAATCCCAGTGCCGTCGTCGCCGCCGTCGCAGCGGCGGCAGCGGCAGCGGCGGACAGCGAGCGGATCATCAACGGGGTGTGCGTGATGCAGGCCTCCGAGTACGGACGCGACGATCCCGACAAGCCATCCGCCACGGATGCCGGCGGCGACTCCGACCATGAGCATGCCCAGCTGGAGATCGACCAGCGCTTCATGGAGCCCGAGGTGCACATCAAGCAGGAGGACGACGACGACGATGTGGAGCAACTGGGTGGCCTGGCCAATCTCGTGGACAACAACGACGACTCCACGGCCAGCGATCAGAAGCTGAAGGTCGTCAACGAGGAGAAGCTGCGCATGGTGCGAGTGCGGCGACTGAGCAGCACTGGCGGCGCATCCGCCGAGGAGATGCCCGCCCCCCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAAGAATTCAGTGCAATGTAGAGAGAAGCGTTTACTTGTGA
Protein Sequence
MSNIEELDEEEEDEEEDEDEDDEEENASMQSNADDMELDAPQETRTEPTLLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAAATNNNNNSQSSDNNKKLSTATAPLEASSSIGDLAEATKTTVPAEDEDEDEDQAMLVDSEEAEEKPEEPHHEEDDEEEEEEADDREAVNATTTDSNELKIKKEQHSPLDLNVLSPQSAIAAAAAAAAAAACANDPNKFQALLIERTKALAAEALKNGASDAISEEINRNADDEDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPNETEAKAGIELAPKQEVEDEDDDEVTSDEVILPEQLVNDYWRRGFESGNANSTSSTAMPGSKTPTIYQNLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHGHHLHGHGHGLLHPSAAHHLHHQAATESGSNSSTPTTGVGAGNNPSNNGSSNSSSNTASSTTAQLAASLASTLNGGKSLLQEDSNGLAAAAMAAHAQHAAALGPGFLPGLPAFQFAAAQVAAGGDGRGHYRFADSELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGAGGDDSMSEDRIAHILSEASSLMKQSSVAQQHREHQERRGHEDSHSNEDSKSPPQSCTSPFFKVEQQLKQHQHLNPDQAAAAQQRERERDREHREREREQQQRLRHEDLAQDKMARLYQELIARTPRETTFPSFLFSPSLFGGAAGMPGAASNAFPAMADENMRHVFEREFAKLQQHQQQQAAQAQFPNFSSLMALQQQVLNGAQDLSLAAAAAKDIKLNGQRSSLEHSAGSSSCSKDGERDEAYPSSLHGRKSEGGGTPAPPAPPSAGQSVGGGVVGGGAAGPVPGAGAPSSGGGGGGGGGASGNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLASKMQAASLPMQKMMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALHHQSMLLTSPGLPPQHAISLPPSAGGVQPGGPGGQGNSSALNSEKKPMLMPVHGTNTMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAVGASGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDDLELDGGGGHPLSDNESLEGQEPEDKTTTDYEKALHKSALAAAAAYMSNAVRSSRRKPAAPQWVNPAGAVTNPSAVVAAVAAAAAAAADSERIINGVCVMQASEYGRDDPDKPSATDAGGDSDHEHAQLEIDQRFMEPEVHIKQEDDDDDVEQLGGLANLVDNNDDSTASDQKLKVVNEEKLRMVRVRRLSSTGGASAEEMPAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRIQCNVERSVYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2