Basic Information

Gene Symbol
ct
Assembly
GCA_035042165.1
Location
JAWNLU010001470.1:720407-762541[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.9e-27 6.9e-23 80.6 0.0 3 72 1122 1192 1120 1197 0.95
2 3 6.8e-32 6.8e-28 96.6 0.0 3 77 1603 1678 1601 1680 0.96
3 3 4.2e-31 4.2e-27 94.1 0.0 3 76 1881 1955 1879 1958 0.96

Sequence Information

Coding Sequence
ATGTGCCGCGCGCACGACTCAACTGAGGGGGCGGGGGGTGGTTTACTGCGCGCTACTCTAGCCGAGAAGGAAGTGAATACACTCAAGGAGCAACTATCCACAAGCACACCCGGCAGCAatagcgacagcaacagcaacagtggcaacaataacacaacagcagcaacagcaacaacaacgacagcaacaggagcaacaacagcatcattGATTGGCGGTGAGGAAGAAGCCACTGGGAATTGTGAAAGCGATAGCGACAAACTGCTGAGTAGCTCCATTGTTGCAGCGGCAATAACGCTGCAACAGAACGGCGGCAATCTGCTGGCCAATACAAATACACCGTCGCCATCGCCGCCGTTGCTGAGCGccgaacagcagcaacagttgcagagCAATCTGCAGAACGGCGTCGGCGGCGCTTGTCTAAATCCAAAGCTCTTCTTTAATCACGCACAGCAAATGATGATGGaggcggcagctgctgctgctgctgcggcggctGCAGcggcagcacaacaacaacagcaacaatcgcCTATGCACTCACCCGCTGCCGCAGTCAACAACACACAAGCaacagcagttgcaacaaacacaacagcagcagcaacaacggcagcagcaggagcagcaacaacaacagcggcaacagtaACACATCAACAGCAAGCAATACGCGATGTTGCtgaggcaacagcaacagcagcaagcaaTTGCAATGACGATGACGAGGACGACGATGAGGAGGATGCATCGATGCAATCAAATGTGGCACATGCCGATGGTGAactcgatgatgatgatgatatggAGCTGGAGACAGagcttgttgctgctgagaTCGGCAAgattgctgccgttgccgctgAGTCATCAGCAAGAACTGAAAATGTTGCCGATGTACAGGCAACGCAACATGTTGCTGATGTCGACGAtgtcgatgatgatgatgttgatgaagATGCTGCTGAAGACGAGCATGAGGATGAgcacgatgatgatgagggaGCTAGTTTAAATGTTAGCAATaatcataacaacaacaataccgAGAGCTGTAGtcgaaagaacaacaacaacagtgagaCGCAACATGTTGCACTGCGTGATAATAATGTAAATGAGCAACATGTGGCACATAGCGCTGAGGACGAGGATTgcaccaataacaacaatactaacaacaacaacaacaacagcaatgagaAGCGCAAAAAGCGCAAcgccaccaacaacaacaataataacaacaacaaccagcccGCTGTTTTATTAGCTGCCAAAGACAAAGAGATTAAAGCACTTTTGGATGAGTTGCAACGCCTACGCGCTCTGGAGCAAGCTCACCTTGTACAAATCCAAAGACTCGAGGAGCATTTGGAAGTGAAGCGACAGCACATAATGCGATTGGAGGCGCGTTTGGATAAGCAACAGATCAATGAGGCATTGGCCGAGGCAACTGCATTGGCGGCCGCTGTTAATGCGgcagcaacaaataataataacaataataacaacaatagcaatattaatatcaacaacaacaacaacaacaacaataacaataataatcacaGTAGCCAGagcagtgacaacaacaacgagacaacaacagcgacagcgacagtgTTCAAATCGAAAACAGATCTTACATCGACTCATCAGCAcaatgacgatgatgacgatgatgatgacgatgtcaatgatcatgatcatgatcatgataATGAGCTGcgtgatgctgatgatgatgacgatatGGAAATTACAGGCagcgagcaacaacaacagcagcaacagcaacagcaacaacaacatgcagtTGCCAACAATCGGCATGAGGAGGAGAATGATGAGGAGGAATGCGATGCTGAAATGTCCAATGAGCACGATGCTGAAATGTCCaatgccacagcaacagcggAGAGCAATGagctgaaaatcaaaaatgagcAACTCAGTCCACTGGATCTGAACGTGCTCAGTCCACAGTCGGCCcttgccgctgccgccgcggCCGCAGCAGCCGCTGCCTGCGCCAATGATCCGAACAAATTCCAAGCTCTGCTCCTGGAACGCACCAAGGCGCTGGCTGCTGAGGCGCTTAAAAATGGCGCTAGCGATGcgttaaatgcaaattgcgaTGAACAACAACGTGcaacagaggcagcgacagctgaacatgtggcagcaacagatgaagaagaagatgtaGCAGCCAAGTCACAGCCTGAAACAAGCAAAATAGATACGGAATCGAATGAAATTGAGACATTGCCCGATGTCAACTTGCAGCCAAAAGTCGAAATCATTGACACTGACGATGCCGATGATGGCAACCCTGCCACGGGGGTTGAGGTAGCAGGTCAAACGCTGGAAGAGCAGCTCGTTAATAGCTATTGGAGACGTGGCTTTGAAACgaacacaacagcagcagcagcagcagctgttgcagcaTCTGGGAGCAAAACGCCaacaatttatcaaaatgCCAATGCGgtacagcagcaactgttgccgccaccgccaccgccgccgccacaacagcagcagcaacagcactttgccacgcaacaacaacaacaacaacagcaacatcagcactaccagcaacagcaacaacaacaacagcagcaacatggaCCCTCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCAACTCGCCTAGATGCCGGATCACATCACCAACACCAGCACCAGCATCCactccagcagcagcaacagcagcagcagcaacaacagttattgcaacatcaacatcatcataacagcagcaatagcagcaacagcagcgcacCTGGCAGCGATCAACTGAACCACCATCATCATGCGCACCACCACGCCCATGGGCATGGTCAATTGTTGCATTCGGCACATCATTTGCATCACGGTGGCGACTCCAATTCATCCAGCGCCAACAGCACACCGAACAGCACCGCTCAGCTGGCGGCAAGTATTGCCAACACGTTGAACGGCAACAAGTCGCTTCTGACGCCGAATGCGAATGCAGCAGCTGCCGCAGCGGCAATGGCGGCACATGCCCAGCATGCCGCCGCCCTGGGTGCCCCAAATTTCTTGCCCAACCTGCCCAGTTTGCCGGCATTCCAATTTGCTGCCGCCGCAGCCGCTGGACAAGATGCCCGGGCGCATTTTCGCTTTGCGGATGccgaattgcaattgcaaccgGGTGTCTCAATGGCCGGCCGATTGGGTGAATCCCTCATACCCAAGGGTGATCCCATGGAGGCCAAACTGCAGGAGATGCTGCGCTACAACATGGACAAGTATGCGAATCAAGCCCTCGACACACTTCACATCTCGCGACGCGTTCGTGAACTGTTGTCGGTGCACAACATTGGACAACGTCTGTTTGCCAAATACATTTTGGGCCTGTCCCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAGCTGACCGAGAAGGGTCGTGACAGTTACCGCAAGATGCATGCCTGGGCCTGTGATGATAACGCCGTCATGCTGCTCAAATCGCTCATACCCAAGAAAGATTCTGGACTGCCACAGTATGCTGGTCGCGGCGCTGGCGGCGATGATTCCATGTCTGATGATCGCATTGCCCACATACTCAGCGAGGCCTCATCCCTCATGAAAAGTAATGCGGCAGccgcccaacaacaacaggagcatCAGCGTCGACATATTGCCGCCGATGATACTCACAGCAATGAGGATAGCAAGTCGCCGCCTCAGAGTTGCAGCTCACCCTTCTACAAGGTCGATCAGCAgctgaagcagcagcaacaacagcagcaacagttgcatgTCTCGGAGCATGCGCAACGCGAGCAACGTGAAGCGGCTGCAGCAGCGGCTGCCGTTGCCgttcatcagcagcagcagcaacgcgAGCAGCGGGAACAGCGCGAGGCGGCACAgcgggagcagcagcagcggctcCGTCACGAGGATTTGGCCCAGGACAAGATGGCACGTCTGTATCAGGAGCTGATGGCCCGCACACCGCGCGAAGCACCCTTCCCAAGCTTTTTGTTGTCGCCGTTCTTTGGTGGCGCCGCCGGCATGCCCGGGGCAGCAGCCAATCCATTCCCCGCGGCGATGGCCGCCGATGAGAATATGCGTCATGCGTTTGAGCGGGAAATCGCCaaattgcagcaacagcatcagcaacaggcTCAGGCCGCCAGTTTTCCCAACTTTTCCAGTTTAATGGCACTGCAGCAGCAGGTGCTGAACGGTGCACAGGATCTGTCGCTGGCCGGCAAGGACATCAAGTTGAATGGCCAGCGATCATCGCTCGATCAAcacagtggcagcagcagcagcaaggaTGGCGAACGGGGCGATGATGAGCGCGGCTTTGGAGCATTGCCACATGCCCGTAAATCGGATGGTGGCAACACACCGGCACCgccagcaccaccagcaccgcCACCACTACCGAACAGCGGCAATCCGAATGCGGCAACAAATGCTGGTGTTGCCGGTAGCGGCAATCATGGCAGCAACTCAGCAGCGCCAAGTCCATTGAGCAACTCGATCTTGCCACCGGCGCTGAGCAGCCAGGGGGAGGAGTTTGCGGCAACAGCGAGTCCGTTGCAGCGCATGGCATCCATAACAAATTCGTTGATCACACAGCCACCGGTTACACCGCACCACTCGCAACCGCAGCGACCCACGAAGGCGGTGTTGCCTCCGATAACACAGCAACAGTTCGATATGTTCAACAATCTCAACACCGAGGACATTGTGCGACGCGTCAAGGAGGCGCTCTCCCAGTACAGCATCTCGCAGCGACTGTTTGGTGAGTCCGTGTTGGGTCTGTCGCAGGGCTCCGTCTCCGATTTACTTGCCCGACCCAAGCCCTGGCATATGTTGACCCAAAAGGGTCGCGAGCCATTCATACGCATGAAGATGTTCCTCGAGGATGAGAATGCGGTGCACAAACTGGTGGCAAGTCAGTATAAGATTGCCCCAGAGAAACTGATGCGCACGGGCAGCTACAGTGGCAGCCCGCAGATGCCACAGGGATTGGCCAACAAGATGCAGGCCACGCTGCCCATGCAGAAGATGATGAACGAGCTGAAGTTGCAGGAGCCGGCACAGGCGCAACACATCATGCAACAAATGCAGGCAGCTGCCGCCATGTCAGCGgcaatgcaacaacagcaacaggcagcTGCCGCTCAAGCAGCAGCCGTGCAACAGGCCCAAGCACAGGCCGTTCAAGCCGTTCAAGCCCAACAgagtcagcagcagcagcagcaacaacagcagcagcaacagcaggtcGCACAGCAGCAGGCACAATTGTTGCATCATCAGAACATGTTGCTGACATCGCCGGGATTGCCACCGCAACACGCCATTAGTTTGCCAGCGGCAAACACGCCCAGTGGCCAGTCAAGTGGCAATCCAGCGGTAGGCGTGGTAACGCCCGTTAGTGGCGAGAAGAAACCCATGATGATGCCGGTGCATGTTGGGGCTCATGCCCCGAATGCGATGCGCAGCCTGCATCAGCATATGTCGCCAACGGTTTATGAGATGGCCGCCTTGACCCAGGATCTGGATACGCACGACATTACCACAAAGATCAAGGAGGCCCTATTGGCGAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTGGGACTGTCGCAGGGATCCGTCTCGGAGTTGCTCAGCAAACCGAAGCCCTGGCACATGCTGTCGATCAAGGGACGTGAGCCATTCATCCGCATGCAATTGTGGCTGAGTGATGCCAACAATGTGGAGCGTCTGCAGCTGCTGAAGAACGAGCGAAGGGAGGCGAGCAAAAGGAGACGCAGCACAGGACCAAATCAACAggacaacagcagcgacaCGTCCAGCAACGACACCAATGATTTCTATACAAGCAGCCCGGGACCCGGCTCGGTGGGGTCATCTGTGAGTGGTGCACCGCCCAGCAAGAAGCAGCGTGTCCTCTTCTCCGAGGAGCAAAAGGAGGCACTTCGTTTGGCGTTTGCCCTCGATCCGTATCCCAATGTTGGCACCATTGAGTTTCTGGCCAATGAGTTGAGCTTGGCCACCCGAACAATTACCAATTGGTTCCACAATCATCGCATGCGATTGAAGCAACAGGTGCCGCATGGTCAACCCGGTCAGGATAATCCGATACCCAGTCGCGAGAATACAAATGCCACACCATTCGATCCCGTCCAGTTTCGCATTCTGCTGCAGCAGCGTCTCGTCGAGCTGCACAAGGAGCGCATGGGCTTAAGTGGTGCGCCCATCCCTTACCCACCGTACTTTGCCGCCGCTGCTCTGCTTGGACGCAGCTTGGCCGGCATACCGGGAGCTGCAGCTGCGGCTGgtgcggcggcagcagcagccgctgcTGTGGGTGCCGCGGGCGGGGATGAGTTGCAGGCATTGAATCAGGCCTTCAAGGAGCAAATGAGCGGCTTGGACTTGTCCATGCCAACGCTGAAACGTGAACGCAGCGATGACTATCAGGATGAGTTGGAGCTGGATGCCAGCGGTCACAACATGAGTGACAATGAGTCCATCGAGGCGCTTGCCtccgccgccgctgccgccgcctACATGAGCAATGCGGCACGCAGTTCACGCCGCAAGCCCGCGGCACCACAGTGGGTCAATCCCGCCGGCACTGGCACGCCCACAGCCGcagccgctgttgctgctgccgctgctgctgctgctgctgctgccgcggCGGCTGCTGCAGTCGCTGCCGGCGATAGCAGCGAGCGGATTATCAACGGCGTCTGCGTCATGCAGGGATCCGATTACAGTCGCGATGAGAGCGACAGCATCAAAGACGCCAATGATGCTGGCAATGATTTGGACAACGATGAGCATGCCCAGCTCGAGATTGATCAGCGTTTCATGGAGCCCGAGGTGCGCATCAAGCAAGAGgaggacgacgacgacgaacagcaacagctgcagcagcagcaacagttgcagcagcagcaacagcagcaagatTTGCATCAGCAGGAGGAGAGCGGACGCCTCGATAGCGATGCGGCTGAGAAGCAACTGAAGGTGATCAATGAGGAGAAGTTGCGCATGGTGCGTGTGCGGCGTCTCAGCAACAATGGAGAGACCGAGGAGCATTGTGCGGCTGCGCAGCAAGCGACGGTTgcagcgacgccagcagcagctgcgTGGAACTATTAA
Protein Sequence
MCRAHDSTEGAGGGLLRATLAEKEVNTLKEQLSTSTPGSNSDSNSNSGNNNTTAATATTTTATGATTASLIGGEEEATGNCESDSDKLLSSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSNLQNGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAAQQQQQQSPMHSPAAAVNNTQATAVATNTTAAATTAAAGAATTTAATVTHQQQAIRDVAEATATAASNCNDDDEDDDEEDASMQSNVAHADGELDDDDDMELETELVAAEIGKIAAVAAESSARTENVADVQATQHVADVDDVDDDDVDEDAAEDEHEDEHDDDEGASLNVSNNHNNNNTESCSRKNNNNSETQHVALRDNNVNEQHVAHSAEDEDCTNNNNTNNNNNNSNEKRKKRNATNNNNNNNNNQPAVLLAAKDKEIKALLDELQRLRALEQAHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNNNNNSNININNNNNNNNNNNNHSSQSSDNNNETTTATATVFKSKTDLTSTHQHNDDDDDDDDDVNDHDHDHDNELRDADDDDDMEITGSEQQQQQQQQQQQQHAVANNRHEEENDEEECDAEMSNEHDAEMSNATATAESNELKIKNEQLSPLDLNVLSPQSALAAAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGASDALNANCDEQQRATEAATAEHVAATDEEEDVAAKSQPETSKIDTESNEIETLPDVNLQPKVEIIDTDDADDGNPATGVEVAGQTLEEQLVNSYWRRGFETNTTAAAAAAVAASGSKTPTIYQNANAVQQQLLPPPPPPPPQQQQQQHFATQQQQQQQQHQHYQQQQQQQQQQHGPSSTVLLSQLVNSTFSHANHSSCSNSKSTRLDAGSHHQHQHQHPLQQQQQQQQQQQLLQHQHHHNSSNSSNSSAPGSDQLNHHHHAHHHAHGHGQLLHSAHHLHHGGDSNSSSANSTPNSTAQLAASIANTLNGNKSLLTPNANAAAAAAAMAAHAQHAAALGAPNFLPNLPSLPAFQFAAAAAAGQDARAHFRFADAELQLQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSDDRIAHILSEASSLMKSNAAAAQQQQEHQRRHIAADDTHSNEDSKSPPQSCSSPFYKVDQQLKQQQQQQQQLHVSEHAQREQREAAAAAAAVAVHQQQQQREQREQREAAQREQQQRLRHEDLAQDKMARLYQELMARTPREAPFPSFLLSPFFGGAAGMPGAAANPFPAAMAADENMRHAFEREIAKLQQQHQQQAQAASFPNFSSLMALQQQVLNGAQDLSLAGKDIKLNGQRSSLDQHSGSSSSKDGERGDDERGFGALPHARKSDGGNTPAPPAPPAPPPLPNSGNPNAATNAGVAGSGNHGSNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAVQAVQAQQSQQQQQQQQQQQQQVAQQQAQLLHHQNMLLTSPGLPPQHAISLPAANTPSGQSSGNPAVGVVTPVSGEKKPMMMPVHVGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEALASAAAAAAYMSNAARSSRRKPAAPQWVNPAGTGTPTAAAAVAAAAAAAAAAAAAAAAVAAGDSSERIINGVCVMQGSDYSRDESDSIKDANDAGNDLDNDEHAQLEIDQRFMEPEVRIKQEEDDDDEQQQLQQQQQLQQQQQQQDLHQQEESGRLDSDAAEKQLKVINEEKLRMVRVRRLSNNGETEEHCAAAQQATVAATPAAAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00495757;
90% Identity
iTF_00528696;
80% Identity
iTF_00528696;