Dkok001664.3
Basic Information
- Insect
- Drosophila kokeensis
- Gene Symbol
- -
- Assembly
- GCA_035042145.1
- Location
- JAWNLT010000125.1:3011355-3013628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0092 0.59 10.7 3.5 2 23 222 243 221 243 0.97 2 12 0.025 1.6 9.3 1.7 1 19 249 269 249 274 0.95 3 12 0.15 9.4 6.9 0.1 3 23 283 306 281 306 0.93 4 12 0.0035 0.22 12.0 0.8 2 23 319 340 318 340 0.96 5 12 1.1e-05 0.00073 19.8 0.6 1 23 347 369 347 369 0.98 6 12 0.0068 0.43 11.1 0.1 1 23 375 397 375 397 0.98 7 12 0.045 2.9 8.5 4.0 1 23 403 426 403 426 0.97 8 12 0.0085 0.55 10.8 3.9 1 23 432 454 432 454 0.96 9 12 0.00022 0.014 15.7 2.7 2 23 461 482 460 482 0.96 10 12 9.8e-05 0.0063 16.9 1.6 1 23 586 609 586 609 0.95 11 12 0.013 0.83 10.2 0.7 1 19 615 633 615 637 0.95 12 12 4.9e-06 0.00031 21.0 1.0 1 23 643 665 643 665 0.98
Sequence Information
- Coding Sequence
- ATGAGCAAAATCACACCATACTCTGTTAATTCAATATGTCGAGTTTGCCTGGAATATATCGAGAGCACTATAGTACATGACCTGTTTCTATTGCCAGATCTCGCCAAGAAATTCACAGTTTGTACATCCTTATTACTGGATGCCCGGGATGGCTATCCCAGGAATCTCTGTTCCAGCTGCTATGACAGATTGGACGACCTACATGATTTCCAAAAGATGTGCGTGGCCTCGGCTCAGCGATTCAAGCAAATGGTGGCAAACAAACTCGTAGCAAATGTCAATCTAATTGATATATTCGAGCCACTGCCAGTGGCCAGCAACGAAGCTGAACTGCTGACAAAGGACGAGCCACAGAGCATTGATTACGATCCACTGATCAGCCACAAACTTGAATTGATTGATAACGAAGACGATGTTTTTAAAATGCTGGAGCACGTTGACAAAGAAGTCAAACAGGTAACCGAGACTAGCCAACATTTTAAAGGCTACTTcacatcctcctcctcctcttcctcttcggACTGCAGTCTCAGCGATGATGATGTGCCATTGGCACAACGTTTGTTGGATCAAGATAGCGGTTCGGATTCCGAAACAACGTCGAAGGCGAAACGAAAGAGAAAGCGTATTCCCACCTCGGAGCGTCATCTGCATCGCATTATCACCTGCCAAATATGTCAGCAGAAGTTTAAGAAGCAGCTCAACTATGACGAACACATGAAGCACCACAACGAACTGTTGCCGTTTCAGTGTCATGTGATTAGCTGCAAGAAGGGCTTCACCACTGCGGCTGCACTGCGACTGCACTGCGACTATGCGCACACGATGAGTGCCGTTGAAATACCCTGCACAGTGGCCGGTTGCAAGTTGCTTTTCCCTCGCATGCGACTGCTGACAATTCATCTGAAGAAGGTGCACAATATGACGCGCGTGAGTGTGCCGCGTACAGAGCAGCCATGCGGCGAGTGCGGCATGCAGTTCCGGTGTCCTGTGGCGCTTAAGAAGCACATGTACAAGCATACGGGTGAGCAACTGCCCTATCCGTGCAACATATGCGGCAAGGGTTTTCACATAAACAGCGCCCTCAAGAATCATCTGCTGCGTCACGCGGGTATCAAGAACTATGTGTGTCCCTATTGTGGTGTGGGGAAAACCACACGCCAGGAGTGGAGCAAACATAttctcacccacacacaggaGAAGATGTTTAAGTGCCACATCTGTgagcatgccacacacaccaagCGAGCGCTCGACAATCATGTGAAGATCGTGCACGAAAAGGTTCGAAACTATGCGTGCCAATACTGTGGCAAGACCTTTGGCAAGTCGCACGCCTGCAAAATCCATGAGATGACGCACACCGGTGAGAAGCGCTGCGAGTGCAAGGTGTGCGGCAAGAAATTCCTCTACTCAGAGAGTTTAACCAAGCATTTGAAGATACACGAGAAGAGTGTGGAGCGGGCAATCGAAACCTATCGCCAGCGGCAAGTGGCAATCAGTGGCTCAAGCGTGGCTGCTGCGCAACAGCTGCAGACACCAGCTGATTGCCAGACGGTCAATTCTGATGCCAATGCGGCGGATCAACTTTTGAAAGTGTGTGCAGAGTCTGTGGCCACCATACCGCGAGATCCACGGCGTGTGGAACGCGTTGATATTGCGCAGCTGGCCGGCACCGTTGTCAATCCCATTCCCGCCGTCCTGGTGCCGTCAAATGCGCCAACGCCAGGCAACTTTGTGGAGAAGGAGGGCATGCACTTTTGTCCTGGGTGCAATCAAGGCTTCAACAATTTGGGCAACATGAAGCGTCATTACAAGAGTGTTCACGAGAAGGTTAAAGATTTTGAGTGCCGTTTCTGTGCACGACGATTTGCCAACTCTCAATCCTTGAAGCAGCATGAATGGATTCATACTGGTGAAAAGCCATATGCCTGCAAGACATGCGGCACGCATTTCCGACAGGAGGCGGCGCTAATACGCCACCAGAAGGTGCACGAGGAGAAACCGCTGAAGCCAGCGAAACCGCCAAAACAAGTAACTGAGAAATTCCGGCAAAAGGAGCTGCAGAAATGTGAGAAACGGCGCTCCGTTGAAGCGTTGCGTCTGAAAATCGCCGAAGCCGCCAAAGAGGAACTACAGGAATTGGCAAAGCAACGTGTCCtcgaaaagcaacaaaacaccTACGAACAGTAcaaggcggcagcagcagcagctgctgaaaaGACAACGAATCCACCAGAAGatgaaagcaaatgcaaatctttGTCCATCTGA
- Protein Sequence
- MSKITPYSVNSICRVCLEYIESTIVHDLFLLPDLAKKFTVCTSLLLDARDGYPRNLCSSCYDRLDDLHDFQKMCVASAQRFKQMVANKLVANVNLIDIFEPLPVASNEAELLTKDEPQSIDYDPLISHKLELIDNEDDVFKMLEHVDKEVKQVTETSQHFKGYFTSSSSSSSSDCSLSDDDVPLAQRLLDQDSGSDSETTSKAKRKRKRIPTSERHLHRIITCQICQQKFKKQLNYDEHMKHHNELLPFQCHVISCKKGFTTAAALRLHCDYAHTMSAVEIPCTVAGCKLLFPRMRLLTIHLKKVHNMTRVSVPRTEQPCGECGMQFRCPVALKKHMYKHTGEQLPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHILTHTQEKMFKCHICEHATHTKRALDNHVKIVHEKVRNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYSESLTKHLKIHEKSVERAIETYRQRQVAISGSSVAAAQQLQTPADCQTVNSDANAADQLLKVCAESVATIPRDPRRVERVDIAQLAGTVVNPIPAVLVPSNAPTPGNFVEKEGMHFCPGCNQGFNNLGNMKRHYKSVHEKVKDFECRFCARRFANSQSLKQHEWIHTGEKPYACKTCGTHFRQEAALIRHQKVHEEKPLKPAKPPKQVTEKFRQKELQKCEKRRSVEALRLKIAEAAKEELQELAKQRVLEKQQNTYEQYKAAAAAAAEKTTNPPEDESKCKSLSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560508;
- 90% Identity
- iTF_00511454;
- 80% Identity
- -