Basic Information

Insect: Drosophila kikkawai
Gene Symbol: SCRT1
Assembly: GCA_018152535.1
Location: NW:1509776-1521545[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.2e-06 0.00013 21.9 4.1 1 23 458 480 458 480 0.99

2 5 0.00043 0.026 14.7 0.1 2 23 490 511 489 511 0.98

3 5 4e-06 0.00024 21.1 0.5 1 23 515 537 515 537 0.97

4 5 9.7e-09 5.8e-07 29.3 0.5 1 23 543 565 543 565 0.98

5 5 3.1e-05 0.0018 18.3 2.6 1 21 571 591 571 592 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.2e-06	0.00013	21.9	4.1	1	23	458	480	458	480	0.99
2	5	0.00043	0.026	14.7	0.1	2	23	490	511	489	511	0.98
3	5	4e-06	0.00024	21.1	0.5	1	23	515	537	515	537	0.97
4	5	9.7e-09	5.8e-07	29.3	0.5	1	23	543	565	543	565	0.98
5	5	3.1e-05	0.0018	18.3	2.6	1	21	571	591	571	592	0.95

Sequence Information

Coding Sequence: ATGTCCGTGGACTTCATACTGCCCAATCGCAACAAGATCCAGACGATTGCCTACGCGAGTGCCAGCAAGAAGCATGTCCAGCAGGCAGCAAATTCAGGATCAGGCTTAGCTGCAGGATTGGGGCCCGGATCCGGTACAGGAGCAGCTGCTGACTTGCAGAGCTGGCGCCGCCCCAAGCCCAGGAGCTCTGCGGGAAAGCACAAGGCGGCTGCAGAGGATAGGTCACCCACAGTTCTGAGAAATGCCAATGGAAATGGTCTGGCCAGCAGCGCCAAGTTGCCACTCAAAACGATGGCCAAGAGGAGCTCCCGTTCGGTGCTCAAGCGAGAGATTATCGAGCTGGATGACGAGGAGGGCGAGGAGCGAGAGGATCAACTGTGCGAGCACCTGGAGTGGTCCGCCGCCCAGTCCCTGGTCCAGATGAACTCCTCCAAGCAGGAAAAGCAGCGGCGAGCGGGAACAACTCAGTCAGGTGCCCCTGGGGCAGCTCCCATATCCGCTTCAGTATCGCTGCGCCGTCCAGTGGGTAGAGCTCCGGCGGAGGATGGCAAGGTGATCTTCTATGCCCCGCCCGCCAGCGCAACAGGGGCGCCCCGCCAGCCGGAGCCCGTAACCCTGAAGAGGGAGCGGGAAAGGGAACGAGAGCGTGAGCGGGAGCGCGAAAGAGTGAGGGAGCAGCAACAGGTCACGTCGGCGGCAGCGACGGCATCGTCGTCTGCATCGATATACCGCGGACGCAGTGTCGAGGAGACGGAGGCCGCCCACGACCTGCTGTCGCTGTCGCAGAGCCTGCCGCCGCTGATCCCGCCCTGCGTGGTCACCATCatgaagcaggagcaggagcagctgcgctgcccggagATCCAGGAGATATCGAACAGCGCTTCCAGCCGCTCGCCACAGTCGACCATTCGATTCATTGGCAGCAGCTCCTACGACCTGATGCACGGCTCCGCGGAGGGCGCCACCACCAACTGCTCGCCGCTGACGCCGCCCAACTCGGATCACAGCTCCGACGTAGATATAGACATGTCTTCCTCCTCCGAATCGGGGGTCCAGCACTGGGGCAgcaagcagcaacagcagccatcGTCGTCCCACAATCACCATCAGCAGCCGCCGAGGGCGTCGGCCTTGAAGATGTGCCTCAACATGCTGGACGGCCGGACCAAGGCCAGCAAGGCCAGGCAGGAGCCGGTCCTGCCGCGTCCCAAGAGCGTCCAGAGCAACGCCTCCAGTCCGGGTGGCGACCAGCCAGATGTGGCCGTCTCCGTGGCCCCCAGCCACTCGTCCTCCTCCACTGCCTCGGTGGCGGGATCTGGAGCCGGTGGTGGCAGCGGCGAGAACTATGCCAAGCGCAAGCGTGGCTGCTACAAGTGCTGCGAGTGTGGCAAGCAGTACGCCACCTCCTCGAACCTCTCCCGTCACAAGCAGACGCACCGCTCCCTGGACTCGCAGTCGGCCAAGAAATGCAATACCTGCGGCAAGGCCTACGTCTCCATGCCGGCCCTGGCGATGCACCTGCTCACGCACAAGCTCTCGCACAGCTGCGACATCTGCGGCAAGCTTTTCTCCCGGCCCTGGCTGCTCCAGGGTCACCTCAGATCGCACACCGGAGAGAAGCCCTACGCCTGCGTCCACTGCGGCAAGGCCTTTGCCGATCGCTCCAACCTGCGGGCGCACATGCAGACCCATTCGGGGGACAAGAACTTCAAGTGCCATCGGTGCAACAAGACGTTCGCCCTGAAGTCGTACCTCAACAAGCACCTGGAGTCGGCCTGTCTCCGGGACACCGGGGCCATTGGGCAGGGCAAGGAGATGGATCTGGATggggaggaggacgaggaggagctgaaCAAGCAGGACGACCTGGAGGGCGATGAGCTGGACAGCGACGAGAACAGCCAGGACATCGTGGTGGCCTAa
Protein Sequence: MSVDFILPNRNKIQTIAYASASKKHVQQAANSGSGLAAGLGPGSGTGAAADLQSWRRPKPRSSAGKHKAAAEDRSPTVLRNANGNGLASSAKLPLKTMAKRSSRSVLKREIIELDDEEGEEREDQLCEHLEWSAAQSLVQMNSSKQEKQRRAGTTQSGAPGAAPISASVSLRRPVGRAPAEDGKVIFYAPPASATGAPRQPEPVTLKRERERERERERERERVREQQQVTSAAATASSSASIYRGRSVEETEAAHDLLSLSQSLPPLIPPCVVTIMKQEQEQLRCPEIQEISNSASSRSPQSTIRFIGSSSYDLMHGSAEGATTNCSPLTPPNSDHSSDVDIDMSSSSESGVQHWGSKQQQQPSSSHNHHQQPPRASALKMCLNMLDGRTKASKARQEPVLPRPKSVQSNASSPGGDQPDVAVSVAPSHSSSSTASVAGSGAGGGSGENYAKRKRGCYKCCECGKQYATSSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDICGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKCHRCNKTFALKSYLNKHLESACLRDTGAIGQGKEMDLDGEEDEEELNKQDDLEGDELDSDENSQDIVVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00572086;
90% Identity: iTF_00613670;
80% Identity: -