Basic Information

Insect: Drosophila kanekoi
Gene Symbol: salm
Assembly: GCA_037075305.1
Location: JBAMCE010000577.1:8437231-8447027[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.1e-06 0.00034 21.0 0.9 1 23 479 501 479 501 0.98

2 7 1e-05 0.00067 20.0 2.1 1 23 507 529 507 529 0.98

3 7 0.017 1.1 9.9 1.5 2 23 897 918 896 918 0.98

4 7 7.2e-08 4.8e-06 26.8 0.5 1 23 924 946 924 946 0.98

5 7 0.00022 0.015 15.8 2.3 1 23 956 978 956 978 0.98

6 7 0.029 1.9 9.1 2.9 2 23 1374 1395 1373 1395 0.97

7 7 2.8e-08 1.9e-06 28.1 1.3 1 23 1401 1423 1401 1423 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.1e-06	0.00034	21.0	0.9	1	23	479	501	479	501	0.98
2	7	1e-05	0.00067	20.0	2.1	1	23	507	529	507	529	0.98
3	7	0.017	1.1	9.9	1.5	2	23	897	918	896	918	0.98
4	7	7.2e-08	4.8e-06	26.8	0.5	1	23	924	946	924	946	0.98
5	7	0.00022	0.015	15.8	2.3	1	23	956	978	956	978	0.98
6	7	0.029	1.9	9.1	2.9	2	23	1374	1395	1373	1395	0.97
7	7	2.8e-08	1.9e-06	28.1	1.3	1	23	1401	1423	1401	1423	0.99

Sequence Information

Coding Sequence: ATGCGTAGTGACTTCAAGGATAATCACCAGGAgaccataaataaaatgatacAGTTTGGTACCGTTAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCCAGAAGCGCAGAGAAAGaCATAGCAAGTGATCAGGAAGATAATGGCGCCTGCTCGCCTCTGACAACCGCGACGGCTAGCGCCAGTGCTGGCAACAGTCCGTGTCCCAGCCGCAGTCCACAGCAGCTCAGCGAGGACGAAAGGGAGACAGTCCAAGGGTCGGAAAAGGAATTGGTACTAGAGGAGAGTGCCCAGTCCGAATCAGAGATTGGTAAAGTGcagcaaatagaaaataatgtCGATGAGACAATCGCGGATCACAatcataataacaacaacaacgacaacaaattgGTCATGACAAAACCGCCAGTCGAACACGAGGTCGAGCAGAACGCCAATTTAAACGCTTCTATGCCGAATTCACCCACAGCCGCGACTTCGTCAATGGAGGAGGAGGCAACTTCCCAGGCTATATCCCCTAAAAAGGAGTTGGACGTGGATGTTGAAATGCAGGATGAGGGAACGCCGCGTGGCAAGAACTCAACTACGCCACCAGTTACCAATGCAGTGATTGCTGGCGCAGCAGCACAGCAATTTGGCGCCACACCTGTCACCCTGGAAGCCATACAAAACATGCAGATGGCCATTGCACAGTTTGCGGCTAAGACAATTGCGAATGGCGCATCTGGAACGGACAATGAGGCAGCCATGAAGCAGCTGGCCTTCTTGCAGCAGACGCTCTTCAatttacaacagcagcagcttttcCAGATTCAGCTTATTCAGCAATTACAATCGCAGCTGGCTCTTAACCAGGTTAAGCAAAACGAAGACgaagccgaagccgaagccgACGAGGAACTTGAGCCGGAGGAACGTGAGGATGGCGAAACGGATACCTACGAAGAGGAGGAGCGCATCGCAGACATGGAGCTGCGACAAAAGGCCGAGGCACGTATGGCCGAGTCCAAGGCGCGTCAACATCTTATAAATGCTGGTGTGCCTTTACGCGAACGCTCCAGATCCATCTCACCAGCAGCCACATCGCTTTCAACTTCGTCGCTAAAGCGCAAACGCGAAGAAGATGCCAGTACCAAGTCGTCCGGCGCTAGTGCTAAGATTTTCGGTGAGCAGGAGAGCTCGCAGGATGCCCTGAACAAGCTTAAAGAAATGGAGAATATGCCGCTGCCCTTTGGTGCGGATTTGTCGTCTAGCATCATTACCAATCATGACGATTTACCAGAGCCTAATTCCTTGGATTTACTGCAAAAGCGCACCCAGGAGGTGCTCGATTCTGCTTCCCAAGGGATCTTAGCCAATAACATGGCCGATGATTTCGCCTTTGGGGACAAGTCCAGCGACGGTAAGGGTCGCAATGAGCCCTTCTTTAAACACCGCTGCAGGTACTGCGGAAAGGTATTTGGCTCCGATTCTGCCCTACAAATTCATATACGGTCCCATACGGGTGAGCGACCCTTTAAATGTAACGTCTGCGGCAGCCGATTTACCACGAAAGGCAACCTTAAGGTGCATTTTCAGAGGCATGCGCAAAAGTTCCCGCATGTGCCCATGAATGCAACTCCAATACCAGAGCACATGGACAAGTTTCATCCACCGCTGCTGGATCAAATGTCTCCCGACAGTTCTCCAACGCAGTCACCAGCCCCAGCGACTGGTCTGCCGCCGCCATCAACGTCCACTCTAACACAGATGCAGCCGTCGATGGCGTTTGCCTCAAGTCCTGCGTTCCCTGGACTGCAGGGCATATACCGACCACCTATGGAGCTGCTTAAGTCACTAGGTGCTACTGCAGGCAGTAACGCCGGCTTGCCGCATCCCTTCTTCCCCCAGATGCCGGGGTTGGGTGCGGCACTGAAGCACACGCACGATCAGAGTCAGGACATGCCCACGGATTTGCGCAAGTCCTCGGGTCCCAGCTCCCCCCACGAGGAGGAAGACAACATTATAGCGGCTAGGTTGCCCGTTAAATCGGAGCTAATGGATGAGGAAAAGACGGAACACACGATggaagcagcgacagcagaaAGCGCCGAAATGGAGCCACTGCCGCTTGAGGTGCGAATTAAGGAGGAGCGCGTCGATGACGATCAGGTACATTTGCAGGAGAGTATGCAAAAGCCGGAGGCGCCTAATCGGCGTACACCTACGCCCTCACCCTCAACAGTGCCTCATACGCCACCACTCATGCAGCGGCAAAATCATCACGTTCACTCCCACTCCAGTGTTATGCCCGCCTATCCGCCCGTGGTGCAGCCTATCCAACCACCAGCAATCATGCATGCGCAGTGCTCACCTGGATCGCAGACGCATTTGGATCAGTTGCCGACTCCTGGACAACTCCCGCCCACGATGCCCCAACGAGAAGACTTCTTTGCCGAGCGCTTCCCCCTTAATTTCGCTTCAAAGACGGACGACCATTCGCCCATACGTTCGCCGGCTGGCCATGCGCATGCTCACATTCCGCGTTCACCCTTCTTCAATCCAATCAAACATGAGATGGCTGCCTTGCTGCCGCGTCCTCATAGCAATGACAACTCGTGGGAGAATTTTATTGAGGTGTCGAACACCTCGGAGACAATGAAGCTCAAAGAGCTTATGAAGAACAAGAAGATTAGCGATCCTAATCAGTGCGTTGTCTGCGATCGCGTCCTCTCCTGCAAGAGCGCTCTCCAAATGCACTACCGTACACACACGGGCGAGCGACCTTTTAAGTGTCGTATTTGTGGCCGAGCCTTCACGACCAAAGGCAACCTGAAAACCCACATGGCTGTGCACAAGATTCGACCGCCCATGCGCAACTTTCATCAGTGTCCGGTTTGCCACAAGAAGTACTCAAACGCGCTTGTGCTGCAACAGCACATACGTCTGCACACGGGGGAGCCAACCGACCTGACACCCGAGCAAATACAGGCCGCCGAAATACGCGATCCGCCGCCTTCAATGATGCCTGGACACTTTATAAATCCTTTCGCAGCGGCTGCCTTTCACTTTGGTGCCATGCCTGGCGGCGGTGCTGGTGGTCCGCCTGGAGCTTCTGGCATGCCCGGTGGTCCGCACAATGGTACATTGGGCTCGGAGTCATCACAGGGTGACTTGGATGATAATATGGACTGTGGCGATGGAGATGACTTCGACGATATCTCCTCGGAGCATTTGTCAAATAGTAACGATCCTGCCGGCGATGAGCGACCGCGTTCCAGTGATGATTTTAAGTCGCTCCTGTTTGAGCAGAAGCTGCGTATTGATCCAACTGGTGTAGTCAACATTAACAGTCATCAGCGACCGCACTCTGCCGCCAGCAATGCTAATTCGATTGGTTCCGCTTCGGCCTCACCGTCAGCTCCGACCAGCCCAAGCTCGCAGCCCAAGCCGAGCTGCTCACCCGTTCGCTCCGTGTCAGAGACTTCACAGGGAGCTCTCGACTTGACGCCACGCGCTCTTCCTCCGCCGCTGGCCTCCTCAAGCTCGCGCTCACCGCTGCCGCCACCTATTGAGCGTAAGGAGAAGACCATTAGCCCGCTTAGTCAGCAGCCTTCGGTGCGTAGTCCCAATGGTCCCGCTTCGCTGCTTTCTTCGCAGTTGCCACCCTCAGTGGGCATTGATTGCCTTCCTCCTGGTCTACAGCATcatttgcagcaacagcatcagcatcttATGCAGCAACAAGCGGCTGtggccgccgcagcagctgcgcagcaccatcatcatcagatGCAGCAACATGCGGTCGCACTGCACCAACATCAGGAACACCTCCGTCGAGAGGCGCAGGAAGTTCAACAGaaagcggctgcagcagccgccgcagcagccgctgcccagCGCCAGGAATCCCCACAGCCCCCACCACGGTCCAGCGAATCGTCAGTCGGCCCGCCTGCCCAGCCCAATCCGCTGATTTCTGCGCGACCGCCCTTCGGCATGTTCCCCAATCTACCAATATTTCCGCCAGCCACCACCCAAAACATGTGCAATGCCATGAACCAAATCGCGCAGTCCGTGATGCCAGCTGCACCATTTAATCCGTTGGCACTCAGTGGAGTGCGGGGCAGCACCACTTGCGGCATCTGTTACAAGACATTCCCCTGTCATTCGGCGCTTGAGATTCACTACAGGAGCCACACCAAAGAGCGGCCCTTTAAGTGCAACATCTGCGATCGCGGCTTTACAACTAAGGGTAACCTTAAGCAGCATATGCTGACACACAAAATTCGCGACATGGAGCAAGAGACCTTCAGAAATCGTGCTGTAAAGTATATGAATGAGTGGAGCGATGATCGTGAATAA
Protein Sequence: MRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSAEKDIASDQEDNGACSPLTTATASASAGNSPCPSRSPQQLSEDERETVQGSEKELVLEESAQSESEIGKVQQIENNVDETIADHNHNNNNNDNKLVMTKPPVEHEVEQNANLNASMPNSPTAATSSMEEEATSQAISPKKELDVDVEMQDEGTPRGKNSTTPPVTNAVIAGAAAQQFGATPVTLEAIQNMQMAIAQFAAKTIANGASGTDNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQVKQNEDEAEAEADEELEPEEREDGETDTYEEEERIADMELRQKAEARMAESKARQHLINAGVPLRERSRSISPAATSLSTSSLKRKREEDASTKSSGASAKIFGEQESSQDALNKLKEMENMPLPFGADLSSSIITNHDDLPEPNSLDLLQKRTQEVLDSASQGILANNMADDFAFGDKSSDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTQSPAPATGLPPPSTSTLTQMQPSMAFASSPAFPGLQGIYRPPMELLKSLGATAGSNAGLPHPFFPQMPGLGAALKHTHDQSQDMPTDLRKSSGPSSPHEEEDNIIAARLPVKSELMDEEKTEHTMEAATAESAEMEPLPLEVRIKEERVDDDQVHLQESMQKPEAPNRRTPTPSPSTVPHTPPLMQRQNHHVHSHSSVMPAYPPVVQPIQPPAIMHAQCSPGSQTHLDQLPTPGQLPPTMPQREDFFAERFPLNFASKTDDHSPIRSPAGHAHAHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFINPFAAAAFHFGAMPGGGAGGPPGASGMPGGPHNGTLGSESSQGDLDDNMDCGDGDDFDDISSEHLSNSNDPAGDERPRSSDDFKSLLFEQKLRIDPTGVVNINSHQRPHSAASNANSIGSASASPSAPTSPSSQPKPSCSPVRSVSETSQGALDLTPRALPPPLASSSSRSPLPPPIERKEKTISPLSQQPSVRSPNGPASLLSSQLPPSVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAVALHQHQEHLRREAQEVQQKAAAAAAAAAAAQRQESPQPPPRSSESSVGPPAQPNPLISARPPFGMFPNLPIFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNEWSDDRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00534052;
90% Identity: iTF_00490976;
80% Identity: -