Basic Information

Insect: Drosophila kanapiae
Gene Symbol: -
Assembly: GCA_008042475.1
Location: VNJM01001160.1:226158-229810[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.29 23 5.7 0.2 2 23 218 240 218 241 0.93

2 7 1.4e-06 0.00012 22.4 2.8 1 23 929 951 929 951 0.98

3 7 0.00026 0.021 15.3 2.4 1 21 990 1010 990 1011 0.94

4 7 2e-06 0.00016 22.0 0.5 2 23 1018 1039 1017 1039 0.97

5 7 0.018 1.4 9.5 3.9 1 23 1045 1067 1045 1067 0.98

6 7 0.0073 0.58 10.8 1.7 1 23 1073 1096 1073 1096 0.97

7 7 0.00073 0.058 13.9 1.5 1 23 1106 1128 1106 1128 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.29	23	5.7	0.2	2	23	218	240	218	241	0.93
2	7	1.4e-06	0.00012	22.4	2.8	1	23	929	951	929	951	0.98
3	7	0.00026	0.021	15.3	2.4	1	21	990	1010	990	1011	0.94
4	7	2e-06	0.00016	22.0	0.5	2	23	1018	1039	1017	1039	0.97
5	7	0.018	1.4	9.5	3.9	1	23	1045	1067	1045	1067	0.98
6	7	0.0073	0.58	10.8	1.7	1	23	1073	1096	1073	1096	0.97
7	7	0.00073	0.058	13.9	1.5	1	23	1106	1128	1106	1128	0.98

Sequence Information

Coding Sequence: ATGAGCGATGCGGCCTATCCGGGCTTCtacggcggcagcagccaagTGAGCCACCAGTTGCACCTGCTCCCGCTGTCGCACCCCCCGCACCCGTCACACCAGCACCAacaccagctgcagctccagctccagcacccGCACCCGGACCTCTCGCTCTCCACGCCGGTGCACGCCCTGGAGCACGACTCCAGCACCTTCAACGGATTCTTCGACGACGAGCTGGGCATCGGCGGCAACGCCGCCTCCTGCTCCGCAGCTACCGCCGTCTGGCTGCCCGACggagaggcagcggcagcgccaCCGCCGACAGAGGCAATTCCCTTTGTCCAGATCCACACGACagacctgcagcagcagccggagaaGAGCTACCGCAACGCCTTTCGCCGGCGCACAGCCGAGATCAAGTCGGAGGCGGAGCTGATCAAGTCGGAGCTGGCGGAGGCCGCCGCTAAGGAGCGTCTGAAcgccacgcccacgccgccCACGCGCAACTCCAGCTGCCAGAGCGTGGAGGGAAAGGCGGATGGCCCTGGGCCGCCGCTGGTCCTGCGGTGCCCCAACTGCCCCTTCCTCAGCCTGTGTCAGGTGCGCCTGCAGCAGCACCTTCACCTGGCCACCTGCTACGGATCGAGTGAGCAGAGGCGGCGACAGTGTCCAGGCTGCTCGAACATCTTCTACAGTGGCGATGCCCTTAGCCTGCACCTCAGCCTGGATCACCACCTGGAGGACGGCGAGATACTCGCCCTGCTGACCGAGAAGCCCACCGAAGTGCACGGAAAGAAGCAGGCACAGAACCAGACCCTGAACCACAGCCAAAGCCACCCCAAGAGCCGCATCTTCATCAAGAGCGTGGACTGTCTGCgggagccgcagcagcaggtgaaCGTGAACGTGAACGTGAACTCTTTGCCAGACTTCCCGCCCCTGATGCCGGACAGCGGTTGCACCGGCCAGATCCTAGACCTGCTGGAGGGCGTGGCGGTGGGTGCTTCGCCCAGCGAACAGGCCATGCCGCCGGCACCTGCGAGTGCACCTGCACCGCCGCCGAAACCCATCCAGAAAATCTCCATTAAGAGCGTGGACGTCCTCAGGGAGCCGGCGCTGCTGCCCTTCGACTTTCAGCTGCCGAATCATCCGCTCATCGCGACCAACAGCCTGCTGGATGTCCCCGTCGTGGGAGTGGTGCCCGAAAAGCCGCGGCAGCCAAAGATCTACATCCGCAACGTAGACATCCTCAAGGAGCCAATGGTGCTGCCGTCCGCCCTGCCCGGAATGGGCTTCAACAGCAGTCTTCCGCCTGCCGTGGATCCTGGGGATCCGGGAGGACTGGCGGACGACGGAGGAGGTGGCGGCGACGTCTTCCAGGCAGATTCCCTGCTCACACCCACTTGTCCGCTGCCGGGGTTCGAGCCGAGCCTTGCGCCCTTGGCCCAGATGTGCTCGGAGGGCTTTCCCTTTGACTCCGTTCTGAATGGGAATGGAGGAGCGGTTTCCGGCCTGGACAGCACACGCTTCAGCGCCCTGGACCTTGACTTTGGTGTAGACTTTGTGTCGGACGAGACTCCGCCGCCTCCTACGCTGCCGCCGCCCCTCAATGGCTCCATGGAGCCTTCTATGCCAACCATGGAGCCGCAGCCCGTCCAGCTGGAGCACTACCTGCCGCCCACTGTGGCTGCCCCCATCACGACCAAGCAGAAGATCTTCATCAAGAACGTGGACATCCTGAAGGCCCCGCAGAGAGGCACGCTGCACCTGCGGACCGTGGACGAGCTGAATCTAATGAACCGCACCGAGGTGGAGCACCTGATCGTGCCCAATCTGGAGCCCATGGCGGCCATGTCGATGATGGAGCTGCCGGCCGTGgagcagacgcagcagcaggcactgGAGCTGGATCCGCAGTCGCTGGGCGACTTCCAGCCCTCCATCACTGGCAGTTGGCCCAGCGAGGATGGCTACGATCTGGCCGAGGACCTCGAGTGCTGGCCTTGGATAGAGGAAGCTGTGCCCGATACCGGAGTTGCGGCCCTCGCTACTCCTAGCGAGGTAGCGGGAGGAGGGGAGACGCCGCAGCTCGAGGACTTCTCCCACGCCGCTGAAGATCTGCTGGTCAAGGACTTTCCGCAGCTGTATGTCTCGCCTCCGCCGGAGATACAAGGTCCAGTGGCTGAAGCAGCagttggaggaggaggaggagcaattGTGCCACCTCTGGTGCCCGTAACGACCTCTGGAGGGACGCCTGCAGCAACCCAAAGCGCCACTCTGAGCAGTTTACCAGTTCCTCCACTCGTGCCTTTGGCGGCGGAGGCCGCACCAGCGCCGGCAGAGAAGCCCGCCCGCATCTATGTGGCCAGCAATCTTCTGCCCGCCGCCGTGGAACCGCCAATGCCCGGAGGAACATCCGTGCGAGGCCGGCCCTATGGAGCCAAGCACTCGGGCGGCAGTGCGTCGGCCAAAAAGAGGCCACCGCAAGGCTCCAGCCAGGCGTCCGAGGGCGGCAAGTGCCAGGTCGAGGGCTGCATGTTCCGCTTCAAGTCCCCGGCTACCTTGGAGTACCACGGAAGGTGCCACAACGGGCTGCCCAGCTCCAGCCAGCCAATGGTCTGTCCGGAGTGTAGGTCCAGCGACTTTAGCAACTGGAACTGCCTGCACACGCATCTGTGGCGCACCCACCAGATCGACATGGAGCTGTACTGCTGCCAGCTGTGCAGCTTCAAGACGCCCATCTACTCGCGGCTGGTCAACACCCACGCCAAGATCCACTCGGAGGAGCGCAACTACAAGTGCGAGCAGTGTGGCAAGGGGTTCAAGAACACGAAGCAGCTGAAGAACCACCGACGACTGCATCGCACCCAGGGACTCGGCATGGGCAAGCAGGGGCAAGCGGgtcaggagcaacagcaggagcagggttCCCTGCCCGGTGCCGAGGCCACCAGTCCGGCAGTCACCGTAGTCATGCATCGTTGCGAGGACTGTGGCGTGGCCTTCAAGCAGAGGAAAACCCTGAGGGAGCATCTGTGCAAGGAGCGCAACGAGCAGCTCGAGTGTCCCACATGCCAACGCGTGTTTGGGTCCAAGAGCAGTCTGCGACTGCACCTGCGGACACATCAGGAGCGAAAGCGCTTCCGCTGCGACACCTGCGATCACGAGACGAGCGATCACAATGCCTTCAGGCGGCACCTGGGCACGCACAAGGAGCGCAAGCGCTACTCCTGTCCCCACTGCGACTTCAAGGCCATCCAGAGCACCGCCTTCCGGATACACCTCCAGAAGCGCCATCCCGAGCAGGAGCTGTCCTCGATCATCTACAAGTGCGACCATTGCAGCTTCACGAGCATCAATCAAGGCCTGTTGCAGGTTCACCAGGCCAAGCATGAAGCCTCAGTTCCAGCTGCGAATTCCTCCGCGATCAAGGTGGAAAGTCAGGTGCTGCTCGCACATTCCAGTACAAAGGTGGACCTGCAGGCTGCTTCCTAG
Protein Sequence: MSDAAYPGFYGGSSQVSHQLHLLPLSHPPHPSHQHQHQLQLQLQHPHPDLSLSTPVHALEHDSSTFNGFFDDELGIGGNAASCSAATAVWLPDGEAAAAPPPTEAIPFVQIHTTDLQQQPEKSYRNAFRRRTAEIKSEAELIKSELAEAAAKERLNATPTPPTRNSSCQSVEGKADGPGPPLVLRCPNCPFLSLCQVRLQQHLHLATCYGSSEQRRRQCPGCSNIFYSGDALSLHLSLDHHLEDGEILALLTEKPTEVHGKKQAQNQTLNHSQSHPKSRIFIKSVDCLREPQQQVNVNVNVNSLPDFPPLMPDSGCTGQILDLLEGVAVGASPSEQAMPPAPASAPAPPPKPIQKISIKSVDVLREPALLPFDFQLPNHPLIATNSLLDVPVVGVVPEKPRQPKIYIRNVDILKEPMVLPSALPGMGFNSSLPPAVDPGDPGGLADDGGGGGDVFQADSLLTPTCPLPGFEPSLAPLAQMCSEGFPFDSVLNGNGGAVSGLDSTRFSALDLDFGVDFVSDETPPPPTLPPPLNGSMEPSMPTMEPQPVQLEHYLPPTVAAPITTKQKIFIKNVDILKAPQRGTLHLRTVDELNLMNRTEVEHLIVPNLEPMAAMSMMELPAVEQTQQQALELDPQSLGDFQPSITGSWPSEDGYDLAEDLECWPWIEEAVPDTGVAALATPSEVAGGGETPQLEDFSHAAEDLLVKDFPQLYVSPPPEIQGPVAEAAVGGGGGAIVPPLVPVTTSGGTPAATQSATLSSLPVPPLVPLAAEAAPAPAEKPARIYVASNLLPAAVEPPMPGGTSVRGRPYGAKHSGGSASAKKRPPQGSSQASEGGKCQVEGCMFRFKSPATLEYHGRCHNGLPSSSQPMVCPECRSSDFSNWNCLHTHLWRTHQIDMELYCCQLCSFKTPIYSRLVNTHAKIHSEERNYKCEQCGKGFKNTKQLKNHRRLHRTQGLGMGKQGQAGQEQQQEQGSLPGAEATSPAVTVVMHRCEDCGVAFKQRKTLREHLCKERNEQLECPTCQRVFGSKSSLRLHLRTHQERKRFRCDTCDHETSDHNAFRRHLGTHKERKRYSCPHCDFKAIQSTAFRIHLQKRHPEQELSSIIYKCDHCSFTSINQGLLQVHQAKHEASVPAANSSAIKVESQVLLAHSSTKVDLQAAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00485428;
90% Identity: iTF_00569980;
80% Identity: -