Basic Information

Insect: Drosophila kanapiae
Gene Symbol: -
Assembly: GCA_008042475.1
Location: VNJM01001074.1:660408-662949[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0032 0.25 11.9 0.6 1 23 499 521 499 521 0.99

2 7 0.0058 0.46 11.1 1.8 1 23 529 551 529 551 0.97

3 7 0.00055 0.044 14.3 0.6 1 23 561 583 561 583 0.98

4 7 1.3e-05 0.001 19.4 0.3 1 23 667 689 667 689 0.98

5 7 0.0012 0.095 13.2 1.1 1 23 697 721 697 721 0.98

6 7 2.1e-07 1.7e-05 25.1 2.2 1 23 727 749 727 749 0.98

7 7 0.00021 0.017 15.6 0.1 1 23 755 777 755 777 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0032	0.25	11.9	0.6	1	23	499	521	499	521	0.99
2	7	0.0058	0.46	11.1	1.8	1	23	529	551	529	551	0.97
3	7	0.00055	0.044	14.3	0.6	1	23	561	583	561	583	0.98
4	7	1.3e-05	0.001	19.4	0.3	1	23	667	689	667	689	0.98
5	7	0.0012	0.095	13.2	1.1	1	23	697	721	697	721	0.98
6	7	2.1e-07	1.7e-05	25.1	2.2	1	23	727	749	727	749	0.98
7	7	0.00021	0.017	15.6	0.1	1	23	755	777	755	777	0.98

Sequence Information

Coding Sequence: ATGAGTGTGCTGCCGTATCCACGTACCATGGATGAGGAGATTTTCCGTCACTGCGGCAAGGACTGCGGCGTGGTGACGGCCACCGAGGACTTCCAGTACTTCGCGCTGCGCTGCATCTTCTGCAGCGAGAAGTTCCTCTACTTCGACTCGTTCATGGGCCACATGCAGACGACGCATTTGGGCGATCAGTCGGTGGCCAATACTCGTGCCTCATCCCCTTTCTCAGCGGCCCCcgacggcagcggcggcacctcctcctcttccaATTCAGCGAGCAATCTCCTTGGCCTGCGTCTCGGCGAACCGATGTCCCTGTCCGAAGCGGGCATGCATCGCGTCAATGGGGAGCATCTTCTGCCTAATTTTCACGAGATCGAAGACTTAACGGACGCCGGGCTGCTGGAGCCACAGATGGTCATCAAACAGGAGCTGCAGGATCTGCCCTGCAGCGATGCCGACGAGGAGCAAGAGGAGGACATGGATGATATGGCCGATTcggatgccgatgccgatgatAGCGAGGCCATACTGCCCGAGGGCGATGTGCCGGCggttagcagcagcagcagcaccaacaaggCGCGCATGAAGGTGACCAAGCCTCGCCAAACGGAAATGCCCAACGAGACGTCACTGATTCTACCTGACGGCGATAATGACTCCTTGACGGACGATTACTATGTCGACGAGAATTCCAGGGAGTTCATGGACTGTGGCGAACCGTTCGAGCCGAGCCAGCTGTGCCTCGACTCCGACTTCCTCAGCTACGACGAGATGGTGGAGGAGACCCTGCTGGGGcgCGATCGCGAGGTGACGATGCACATCAAGGACCGGAAAATGATCAAGTTCCTCATCCAATCGTACAAGCGCAATCCCTTCCTCTGGGACCATGGGAATCCACAGTTTCGTGATCGCGTCAAGCGTGCTCGCTTCCTCGACTGGATCGTGGTGGAGTTTAAGAGCCGCTTCAATATCTCCCTGGCCAAGGATGCCATCACACGCAAGTGGGATAACCTGCGTACGGTCTACAAGCGGGAATGCAATCGTATGGCCCTGGAGAAGACCAACATTAGTACGCTGTGGTACTTTAAGGAGCTGCATTTCCTCAACGAGGTCTACAGCTACAACGACAAGATGTCCGATGCTGTGGTCAAGgaAACCTCATATCGTCGCCGCTTCTCGGCCATTTGGAATGACACTTCGACAGCCAAGCTGCTGAGCATGGTGAAGCGCTATAAGTGCTTCTATCATCGCTTCGATCCCGACTATCGCAGCAAGGAGCGTCGCGGCGAGGGCCTTCATCAGATGGCCATGGAGCTGCAGCAATTGATCGATGTGACCACCATTCAAATTTCGAAGCGTATCTCCCAGCTACGCTTCGATTACTCCAAACAGAAGTTGGAGCGTTTGAATTGCGAACGTTTCGGCCGTAAATTCATTGCCAATTACATCTATTACGATCAGATGCATTTCATGGACGATGATATACCGCCGTTTAAGTGCCAACACTGTCCGGAAATTGTCCAGACGCTGAGGGAACTCGATCTCCATATGCTCACCCATCAGCCCAGTTTGGGTGGCGGCTATTATTGCAACATTTGCACCATTCAGTTCCACAATGCCGAGGAGTTTGAGAGCCACAAGCAATTGCATTTGGGCAACGCCGGCAACGATATCAAGTTCAGCTGTGAACTCTGCACGGCCAGTTTCCGTGAGAAGGCCAACTATGATGAGCATTTGCGTCGGCATAACGATGAACTATTCCTGCCATCGCTGGCCATGAATCATAGCATTTTGGAGGCCGGCGAACCGCCAGACGAGTTGGATATTAAGCCACAGCACCTGGCACCCACCACGGGCAGAGGTCGCAAACGGaacgctgctgcagcagcctcCAAATCTTTGCCAGCCGCCGAGCTTAATaatgatgacgacgaggaggatccAACGACAGCAGAGGCgacaggcagcggcagcggcagcgatgTGGCCAAGCCGTACAGCTGTGTGGTATGCCGACGTAGCTTTGCCACACCGGGCCACCTGAATGCCCATCGGATTGTCCATCAGGATGAGCGCGAGCGGAGCTACAAGTGCGATTATCCGCAGTGCCAGAAATCGTTTGTCGCCCGCAATAGCCTGTTCGAGCATCTGAAGCAGCACTACAGCAACGAGGAATTCAAGTGCGATATCTGCGGCAAGACCTTCAAGTCAACGAAGAATCTACAGAATCACAAGCAGATCCATGACAAGGTCAAGCGCTATGTCTGCCAGATCTGTGGCTCGGCCTTTGCCCAGGCGGCCGGTCTATATCTACACAAGCGTCGTCACAATCGTCCCAATGGCTCTGTTGGCGCTGTCGGACGTTCCGGTCGTAGCAGTCTGTGA
Protein Sequence: MSVLPYPRTMDEEIFRHCGKDCGVVTATEDFQYFALRCIFCSEKFLYFDSFMGHMQTTHLGDQSVANTRASSPFSAAPDGSGGTSSSSNSASNLLGLRLGEPMSLSEAGMHRVNGEHLLPNFHEIEDLTDAGLLEPQMVIKQELQDLPCSDADEEQEEDMDDMADSDADADDSEAILPEGDVPAVSSSSSTNKARMKVTKPRQTEMPNETSLILPDGDNDSLTDDYYVDENSREFMDCGEPFEPSQLCLDSDFLSYDEMVEETLLGRDREVTMHIKDRKMIKFLIQSYKRNPFLWDHGNPQFRDRVKRARFLDWIVVEFKSRFNISLAKDAITRKWDNLRTVYKRECNRMALEKTNISTLWYFKELHFLNEVYSYNDKMSDAVVKETSYRRRFSAIWNDTSTAKLLSMVKRYKCFYHRFDPDYRSKERRGEGLHQMAMELQQLIDVTTIQISKRISQLRFDYSKQKLERLNCERFGRKFIANYIYYDQMHFMDDDIPPFKCQHCPEIVQTLRELDLHMLTHQPSLGGGYYCNICTIQFHNAEEFESHKQLHLGNAGNDIKFSCELCTASFREKANYDEHLRRHNDELFLPSLAMNHSILEAGEPPDELDIKPQHLAPTTGRGRKRNAAAAASKSLPAAELNNDDDEEDPTTAEATGSGSGSDVAKPYSCVVCRRSFATPGHLNAHRIVHQDERERSYKCDYPQCQKSFVARNSLFEHLKQHYSNEEFKCDICGKTFKSTKNLQNHKQIHDKVKRYVCQICGSAFAQAAGLYLHKRRHNRPNGSVGAVGRSGRSSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527561;
90% Identity: iTF_00569914;
80% Identity: -