Dkan001443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila kanapiae
Gene Symbol
-
Assembly
GCA_008042475.1
Location
VNJM01001856.1:186121-189993[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.9e-19 8.1e-16 57.5 0.0 2 45 478 522 477 522 0.97

Sequence Information

Coding Sequence
ATGCCTACGGACCCGGCCAATCTAACCAAATCCGATAGCAAGTCCTCCAGCGACGGCACCGAGTTggtgggcggcggtggaggcgtAGGCACTGGAGCTGGTAACTCGGCCGGTAGCTTGGGAGCggccagtggcagcagcagcgtcggcGATTCGCTGTGGAGCAGCAGCGAGGCGCAGCAgttccagcagcaacaacagcaagcgcagcaacagcaccatcaccaccagcaacaacagcagcagctccagcagcaggcgcaacagcaggcggcgcagcagcaagcgcagcagcaggcggcgcagCAGCAAGCGGCACAAcagcaggcgcaggcgcagcagcaccatcaccaccaccaccatcagcagcagcagcagggacagGCGCAGGCTGCGCAGACGCATCACCATCAGATGCGACGCACCCCCTCACCGTTGAGCGCCGGCACCTCGCCGGCCACACGACGCAAGCGGTTACGCAAATCCTCGAATAACGGCTCTGGCGAACGCAACAATgcggaggagcagcaccaCAACAGCTCTCTGGACGCGGGCAGTGGCACCGGCAATGCCGGCCTCAGTCTCGCCCAAATGAGCCAGATGTCATTCGGCGCTGGTAGCGGCCTTGCCGGTCACTCGCTGCACGCGGCCAAGCTGCTAAAGGAGTCGGCGAGTGCCGAGCTGGATCAGCAGCCTCAGGACTCGGATCTGGATGACGGCCACGgacacatacatatgcaaattAAGCCCGAAGTGGACATTGGCGGCGTGAATCAAACGATGCCCCTGGACATCTCTGGCGCCACCACCCCATCCGAGCACGATGCGCCCAACTCTCAGTCGTCGCACTCGGGTCTGCAATGGACAGTTGTCGATTCCAATTATCCGCGCTTCTCCCTGCCCGCCTGCCAGTCCGCCAACTTGCTGGGCAACGGTGGCGGCAGCGGTGGTGCAGGCAGCCAAAGCAGCGGTGCCAATAGCGGTGCCGGCGGCACTAATAGCGatcagcagcgccagcagcagcagcacgaggcccagcaacagcaggtagccacacagcagcagcagcatctgcaacAGCTGCActaccagcaacagcagcaggagcaggcagccgccgctgcagctgctgcagccgcagcCTCCGGACAGGCCTACTCGTCGCAGATCATCACCGTGAACAACCTAGTCAGCGGCTATGCGACGGCAGCCCAGAACCTATCCCCCACCTCGCCCAACGAATCGAACATGGTGCAATCGGTGTACAGCCAAGGCCCAACACCCACCCAATCCCCGGTACATGCGGGCGGAGCGAGtgccggcggtggcggcggcggcagtgcgGGCAATGCCAATgctggcaacggcaacgccaCAGGAGCGGGCGCAAGTCAGGTGGTGAAGCGCAAGAGATCTGTGAATCCCCAAGGCGATGAGAACTTCATTCGAGCCTTGGAGGCGGTGCGAACGGGAGGCATTGGCTTTTGCAAGGCAGCCCGACTGTACGGCGTCAATAATCGCACCTTGTGGCTGGAGTACAAGAAGCGGGGCTACCCGGTGTCGCGGCCGAGCATTAAGGCGCGCGTGGTCAAGCAGGAGCCGAATCTGTCGCCGTCGCCAACACCATCGACGAATCCCGGAGACGACACCACCGAAACGCTCGGCATGCAGATGCCACCGCAGGCGGACACACCGACGCCGTCCTCGCTCATGTGCAACCCACATCACGCGGGCatcggcggtggcggcagcggAGCTGGAAGTCTGCCCGGTGCAGGCAACTCGCATCCGGCCATCGGTGTCATGAGTCTCTTCGATCCGCGGTACATGGACTCGCCCGGCAACGTGCACTCAATGACGCGGCAAAGGTACATCGACGCCacgggtggcggcggcggtggggcTGGTACTGGTGCGGGAACGGGCGCGGGAGCCGGCACCATCAACGTCAATCCAACCACCGCCATGAATCTACAGAGTATTAACTTCAACTCGATATAG
Protein Sequence
MPTDPANLTKSDSKSSSDGTELVGGGGGVGTGAGNSAGSLGAASGSSSVGDSLWSSSEAQQFQQQQQQAQQQHHHHQQQQQQLQQQAQQQAAQQQAQQQAAQQQAAQQQAQAQQHHHHHHHQQQQQGQAQAAQTHHHQMRRTPSPLSAGTSPATRRKRLRKSSNNGSGERNNAEEQHHNSSLDAGSGTGNAGLSLAQMSQMSFGAGSGLAGHSLHAAKLLKESASAELDQQPQDSDLDDGHGHIHMQIKPEVDIGGVNQTMPLDISGATTPSEHDAPNSQSSHSGLQWTVVDSNYPRFSLPACQSANLLGNGGGSGGAGSQSSGANSGAGGTNSDQQRQQQQHEAQQQQVATQQQQHLQQLHYQQQQQEQAAAAAAAAAAASGQAYSSQIITVNNLVSGYATAAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHAGGASAGGGGGGSAGNANAGNGNATGAGASQVVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDTTETLGMQMPPQADTPTPSSLMCNPHHAGIGGGGSGAGSLPGAGNSHPAIGVMSLFDPRYMDSPGNVHSMTRQRYIDATGGGGGGAGTGAGTGAGAGTINVNPTTAMNLQSINFNSI