Basic Information

Insect: Drosophila kambysellisi
Gene Symbol: indra_1
Assembly: GCA_035042185.1
Location: JAWNLS010000077.1:7953708-7956174[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0047 0.33 11.5 0.4 1 23 220 243 220 243 0.97

2 7 3.7e-05 0.0026 18.2 4.0 1 23 251 273 251 273 0.98

3 7 0.0093 0.65 10.6 3.5 2 23 331 353 331 353 0.96

4 7 8.5e-05 0.0059 17.1 4.0 1 23 359 382 359 382 0.97

5 7 0.0075 0.53 10.9 0.6 2 23 720 742 719 742 0.95

6 7 2 1.4e+02 3.3 0.5 2 20 747 765 746 767 0.88

7 7 0.0035 0.25 12.0 0.9 1 23 774 799 774 799 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0047	0.33	11.5	0.4	1	23	220	243	220	243	0.97
2	7	3.7e-05	0.0026	18.2	4.0	1	23	251	273	251	273	0.98
3	7	0.0093	0.65	10.6	3.5	2	23	331	353	331	353	0.96
4	7	8.5e-05	0.0059	17.1	4.0	1	23	359	382	359	382	0.97
5	7	0.0075	0.53	10.9	0.6	2	23	720	742	719	742	0.95
6	7	2	1.4e+02	3.3	0.5	2	20	747	765	746	767	0.88
7	7	0.0035	0.25	12.0	0.9	1	23	774	799	774	799	0.94

Sequence Information

Coding Sequence: ATGTCTGGAAAGACTAAAAAGGATATAATCCAGTGTGATTATTGCAAAGAAGAAAAGGATGCCATTTACATCTACACGACAAGAAAACTATTTGCTGGATGCAAAGTTATTGATATTTTACAAGCCGTCACACGCCGCATCATTCCGGCAACGATACCCATCAAATTGTGCAGCTACTGCGCCTCAACGTTGCACGTGGCCATTGGCGTCATATCAAAAACCGAGGAAGTTGTCTCCCAACTGCTCGAGTTGACGGCAAAAAAGACTAACACCGAAGATACACCAACTGAAAAAGTTGCAGACTCAAACATTGTGGCGTCATCTATTGTACAGAAAGGTgataaaaagcaaacagatacaataaataaatcctTGGCTAATGGAACTCTAAATGCTGTCAAGAAGGACGAGAAAGCAAAGGTGCCAGAGATAAACGCACCATTTGAAAGTCTGCAGAATGCAGTGAAGCTAACGCCCGCCAAGGATTTGCCAAGCAAAACGAAAGCATACAATAAGTTGTTTTGCCCGAAAAGCAATAGTAcaacagagagagatggggaggaggacgaggaggaggatgacgatgacgatgacgagaATAAGGATGGGCATTACCCAGTTATGCAGAAGCCAGTCATTAGGaatatagcaataaatttcgaaTGTAAACTTTGCGATTTTACCTCCGTCTACCCAAATCCTATGAAAAAGCATATGCGTGAGGTGCATGGACTGCAGCGTCCGCGAATCTACAACTGTCACCATTGTGTCAAAACGTTCGGTCGCGAGGATTCGCTCAAAAAGCATCTCTTGGTGCACAATGTCACAGAAAAGAAGGATGAAGAATCGAAACCCGGTAAAGATCTTGCAGTGGTAAGTGCTCTGAAGCCAAAGTATTTAGCAAATCTTGTCAACGATGAAAGTACCTTTAATCTTACGCACACCAACGCATCAACACCAAAATCTGCTGCGGACAAGCAACAGAAAAATACATGCGATAAATGCCACAAGGAATTTGAAACGATTAAATGCCTGGTAGAGCACATGAGCAGCGTTCATGCTACTTCGAAAGCCTTCAAGTGTGTGGAGTGCAATTCTGAATTTACGCACAAGTCGACCTTGAATCGTCACATAAAACAGAAGCACTCCCTTGACGCGGTGGCCACTAACGGCCAGACAGTCCAGAAAATTGCAATGCGACGCAAGACAATGGATACAACTATAAATTctccaacaaaaataaaacagagacGCAAAACTGTTGCAATTGAGCCAATGCAACAGGTAAAAGAGGACAAGGGTCTCCTCCAGGAATGTTTAGAGGAACTCAAAGACGACAATGAGCAGCCCTTGGTAGAACCTATTCAGGTTAAGACACCCTCTCCGAGGAAGTCCACACCAAAAGAGGAGAGTAACCACGTGCAGTCCTTAATCTTTCCCAAAGACAATGTTACGCCCAAGATGCAAAAGACGCCCAAAGGAACCTTTGCAGAGCCAGCAGAGCCaagcaaacataaatcaatAGAAAACGGCACGCAGGTCACCGCCATGCAGGTCACCGCCACGCCCACTAAGCTACAAAACAAAGATTTTAAACGAGACACGCCAAACAAACAGAAGAAATCCAAGTTAGATACAGATGTGCTGGACTCTCCTCAGTCGACAGAAACTATCACAAATGGGACGCCAAAGAAGCAGCGCAAACGCAAAGCTTCCGATAAGCAGACGGAGAACTTATCCCAGGAGGACACAGCCGATGAGGAGCATCTGCCAAACACACCAGCAAACATATCAAAGGCAATGTCAGGAATCCAGACTATTGACTTACTAGACGAAATCAATAGCAATGCAAAGCCACACAAGCGTGTATCCAAGTTAGATACAGATGTGCTGGACTCTCCTCAGTCGACAGAAACTATCACAAATGGGACGCCAAAGAAGCAGCGCAAACGCAAAGCTTCCGATAAGCAGACGGAGAACTTATCCCAGGAGGACACAGCCGATGAGGAGCATCTGCCAAACACACCAGCAAACATATCAAAGGCAATGTCAGGAATCCAGACTATTGACTTACTAGACGAAATCAATAGCAATGTAAAGCCACACAAGCGTGTCAAACTGAACTCGATCAACGTGTCCGTTTCCGAGTCGGAACTgagctgcaacatttgcagCAAGGTGGTCGTCTCCCGCAAACGTCTCGATTCGCACATGCTCAAGCGGCATGCTACACAGCTCAAGTGCCCCAAGTGCAAGACGATCCATACCACCAGTGATGAATACGTAAGTCACTTTGCCACCTGCAAAACGAATGACGGATTCGTGTGCGGCATCCACAAATGTGACAAAGTTTTCGCCGCAGCTAATTATCTAAGTTcgcacttgaaaaaaaaacacacaattaattaa
Protein Sequence: MSGKTKKDIIQCDYCKEEKDAIYIYTTRKLFAGCKVIDILQAVTRRIIPATIPIKLCSYCASTLHVAIGVISKTEEVVSQLLELTAKKTNTEDTPTEKVADSNIVASSIVQKGDKKQTDTINKSLANGTLNAVKKDEKAKVPEINAPFESLQNAVKLTPAKDLPSKTKAYNKLFCPKSNSTTERDGEEDEEEDDDDDDENKDGHYPVMQKPVIRNIAINFECKLCDFTSVYPNPMKKHMREVHGLQRPRIYNCHHCVKTFGREDSLKKHLLVHNVTEKKDEESKPGKDLAVVSALKPKYLANLVNDESTFNLTHTNASTPKSAADKQQKNTCDKCHKEFETIKCLVEHMSSVHATSKAFKCVECNSEFTHKSTLNRHIKQKHSLDAVATNGQTVQKIAMRRKTMDTTINSPTKIKQRRKTVAIEPMQQVKEDKGLLQECLEELKDDNEQPLVEPIQVKTPSPRKSTPKEESNHVQSLIFPKDNVTPKMQKTPKGTFAEPAEPSKHKSIENGTQVTAMQVTATPTKLQNKDFKRDTPNKQKKSKLDTDVLDSPQSTETITNGTPKKQRKRKASDKQTENLSQEDTADEEHLPNTPANISKAMSGIQTIDLLDEINSNAKPHKRVSKLDTDVLDSPQSTETITNGTPKKQRKRKASDKQTENLSQEDTADEEHLPNTPANISKAMSGIQTIDLLDEINSNVKPHKRVKLNSINVSVSESELSCNICSKVVVSRKRLDSHMLKRHATQLKCPKCKTIHTTSDEYVSHFATCKTNDGFVCGIHKCDKVFAAANYLSSHLKKKHTIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549137;
90% Identity: -
80% Identity: -