Basic Information

Insect: Drosophila kambysellisi
Gene Symbol: -
Assembly: GCA_035042185.1
Location: JAWNLS010000464.1:432149-448636[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0015 0.1 13.1 3.4 2 23 30 51 29 51 0.96

2 12 3.3e-06 0.00023 21.5 1.2 1 23 57 81 57 81 0.97

3 12 0.00015 0.01 16.3 1.5 1 18 87 104 87 109 0.94

4 12 8e-05 0.0056 17.1 1.9 1 21 119 139 119 140 0.93

5 12 2.5 1.8e+02 3.0 1.1 8 23 254 269 249 269 0.93

6 12 3.3e-06 0.00023 21.5 1.2 1 23 275 299 275 299 0.97

7 12 0.00015 0.01 16.3 1.5 1 18 305 322 305 327 0.94

8 12 3.3e-05 0.0023 18.3 4.0 1 23 337 359 337 359 0.97

9 12 8.2 5.8e+02 1.4 1.4 9 23 475 489 473 489 0.91

10 12 2.6e-06 0.00018 21.8 1.4 1 23 495 519 495 519 0.97

11 12 3.5e-08 2.5e-06 27.7 3.0 1 23 525 547 525 547 0.99

12 12 3.3e-05 0.0023 18.3 4.0 1 23 557 579 557 579 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0015	0.1	13.1	3.4	2	23	30	51	29	51	0.96
2	12	3.3e-06	0.00023	21.5	1.2	1	23	57	81	57	81	0.97
3	12	0.00015	0.01	16.3	1.5	1	18	87	104	87	109	0.94
4	12	8e-05	0.0056	17.1	1.9	1	21	119	139	119	140	0.93
5	12	2.5	1.8e+02	3.0	1.1	8	23	254	269	249	269	0.93
6	12	3.3e-06	0.00023	21.5	1.2	1	23	275	299	275	299	0.97
7	12	0.00015	0.01	16.3	1.5	1	18	305	322	305	327	0.94
8	12	3.3e-05	0.0023	18.3	4.0	1	23	337	359	337	359	0.97
9	12	8.2	5.8e+02	1.4	1.4	9	23	475	489	473	489	0.91
10	12	2.6e-06	0.00018	21.8	1.4	1	23	495	519	495	519	0.97
11	12	3.5e-08	2.5e-06	27.7	3.0	1	23	525	547	525	547	0.99
12	12	3.3e-05	0.0023	18.3	4.0	1	23	557	579	557	579	0.97

Sequence Information

Coding Sequence: ATGggcagcatcaacagaagcagcagctcagCAACACTGCGATCACTGCTGCCAATAACGCCCACGGCGACGCCAACGGTGGCCCTCACCTGTCCCACCTGCAGTCGCGAGTTCAAAAAGAAGGAGCATCAGACGCAGCACATCAAGCTGCACGCCGGCCTTCGTCCCTTCAAGTGTTCAGAGGAAGGCTGCGACAAGGCGTTCAGTCGCAATGAGCACTTGTCCCGTCATCTAGTCTCCCACTCGGGTCACAAGATGTTCACCTGCGATGAATGCAAGAAGCCCTTCTCGCGCAAGGACAACCTAAACAAGCAAAAGCGCACTCACAATGCACCGCCTGGCGAGACGCAGCTGCACAGCTGTgatatatgcaacaaaaacttttcatCCAAGCAGCAGTTTGAAAAGCACCGGGAAATGGATAAGAAAACGCCCGTCGATAATGCAGCGCCATCCACGCAACGCGCAGGCGCAGACCGTCAGTCTGCCAAGGATATCTTTGAGGTCAAACAAGCAGCGTCCACAGCACCGCAAACGCAGATGAGGCAGCAATCGCAAATGCAGGTGCAACAACAGACGCAACCGGGgccacagcagccgcagaTCATGCATGTGGATCTGGATGGGAGTACCATTACCATTACGCAGGCGTCCGATGCCAGCATGCCAACATCTCTGGCCAACTTTGTGCAGCTGGGCTATTCACAATTCCAGAATTCCAGTGGGCAGACAAGCCAAATAGTTTGTAAACTTGAAAATCGCGAGTTCAAAAAGAAGGAGCATCAGACGCAGCACATCAAGCTGCACGCCGGCCTTCGTCCCTTCAAGTGTTCAGAGGAAGGCTGCGACAAGGCGTTCAGTCGCAATGAGCACTTGTCCCGTCATCTAGTCTCCCACTCGGGTCACAAGATGTTCACCTGCGATGAATGCAAGAAGCCCTTCTCGCGCAAGGACAACCTAAACAAGCAAAAGCGCACTCACAATGCACCGCCTGGCGAGACGCAGCTGCACAGCTGTgatatatgcaacaaaaacttttcatCCAAGCAGCAGTTTGAAAAGCACCGGGAAATGCATAAGAAAACGCCCGTCGATAATGCAGCGCCATCTACGCAACGCGCAGGCGCAGACCGTCAGTCTGCCAAGGATATCTTTGAGGTCAAACAAGCAACGTCCACAGCACCGCAAACGCAGATGAGGCAGCAATCGCAAATGCAGGTGCAACAACAGACGCAGCCGGGgccacagcagccgcagaTCATGCATGTGGATCTGGATGGGAGTACCATTACCATAACGCAGGCGTCCGATGCCAGCATGCAAACATCCCTGGCCAACTTTGTGCAGCTGGGCTATTCACAGTTCCAGAATTCCAACAAATTTGGGCCGACAAGCCAAATAGTTTGTAAACTTGAAAATTGTCAATTCAAAAAGAAGGAGCATCAGACGCAGCACATCAAGCTGCACGCCTGCCTTCGTCCCTTCAAGTGTTCAGAGGAAGGCTGCGACAAGGCGTTCAGTCGCAAGGAGCACTTGTCCCGTCATCTAGTCTCCCACTCGGGTCACAAGATGTTCACCTGCGATGAATGCAAGAAGCCCTTCTCGCGCAAGGACAACCTAAACAAGCACAAGCGCACTCACAATGCACCGCCTGGCGAGACGCAGCTGCACAGCTGTgatatatgcaacaaaaacttttcatCCAAGCAGCAGTTTGAAAAGCACCGGGAAATGCATAAGAAAACGCCCGTCGATAATGCAGCGCCATCCACGCAACGCGCAGGCGCAGACCGTCAGTCTGCCAAGGATATCTTTGAGGTCAAACAAGCAGCGTCCACAGCACCGCAAACGCAGATGAGGCAGCAATCGCAAATGCAGGTGCAACAACAGACGCAACCGGGgccacagcagccgcagaTCATGCATGTGGATCTGGATGGGAGTACCATTACCATTACGCAGGCGTCCGATGCCAGCATGCCAACATCTCTGGCCAACTTTGTGCAGCTGGGCTATTCACAATTCCAGAATTCCAGTGGGCAGACAAGCCAAATAGTTTGTAAACTTGAAAAGTAA
Protein Sequence: MGSINRSSSSATLRSLLPITPTATPTVALTCPTCSREFKKKEHQTQHIKLHAGLRPFKCSEEGCDKAFSRNEHLSRHLVSHSGHKMFTCDECKKPFSRKDNLNKQKRTHNAPPGETQLHSCDICNKNFSSKQQFEKHREMDKKTPVDNAAPSTQRAGADRQSAKDIFEVKQAASTAPQTQMRQQSQMQVQQQTQPGPQQPQIMHVDLDGSTITITQASDASMPTSLANFVQLGYSQFQNSSGQTSQIVCKLENREFKKKEHQTQHIKLHAGLRPFKCSEEGCDKAFSRNEHLSRHLVSHSGHKMFTCDECKKPFSRKDNLNKQKRTHNAPPGETQLHSCDICNKNFSSKQQFEKHREMHKKTPVDNAAPSTQRAGADRQSAKDIFEVKQATSTAPQTQMRQQSQMQVQQQTQPGPQQPQIMHVDLDGSTITITQASDASMQTSLANFVQLGYSQFQNSNKFGPTSQIVCKLENCQFKKKEHQTQHIKLHACLRPFKCSEEGCDKAFSRKEHLSRHLVSHSGHKMFTCDECKKPFSRKDNLNKHKRTHNAPPGETQLHSCDICNKNFSSKQQFEKHREMHKKTPVDNAAPSTQRAGADRQSAKDIFEVKQAASTAPQTQMRQQSQMQVQQQTQPGPQQPQIMHVDLDGSTITITQASDASMPTSLANFVQLGYSQFQNSSGQTSQIVCKLEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -