Basic Information

Insect: Drosophila jambulina
Gene Symbol: salm
Assembly: GCA_018152175.1
Location: JAECXH010000114.1:15456734-15464515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2e-06 0.00015 22.0 1.7 1 23 342 364 342 364 0.98

2 8 2.8e-05 0.0021 18.3 3.5 1 23 370 392 370 392 0.98

3 8 2 1.4e+02 3.1 2.5 5 23 626 644 623 644 0.84

4 8 2.9e-08 2.1e-06 27.7 0.2 1 23 650 672 650 672 0.98

5 8 0.00089 0.064 13.6 0.9 1 23 682 704 682 704 0.98

6 8 0.044 3.2 8.3 0.1 2 23 908 930 908 930 0.96

7 8 9.6e-06 0.0007 19.8 5.0 1 23 1079 1101 1079 1101 0.96

8 8 7.6e-08 5.5e-06 26.4 0.7 1 23 1107 1129 1107 1129 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2e-06	0.00015	22.0	1.7	1	23	342	364	342	364	0.98
2	8	2.8e-05	0.0021	18.3	3.5	1	23	370	392	370	392	0.98
3	8	2	1.4e+02	3.1	2.5	5	23	626	644	623	644	0.84
4	8	2.9e-08	2.1e-06	27.7	0.2	1	23	650	672	650	672	0.98
5	8	0.00089	0.064	13.6	0.9	1	23	682	704	682	704	0.98
6	8	0.044	3.2	8.3	0.1	2	23	908	930	908	930	0.96
7	8	9.6e-06	0.0007	19.8	5.0	1	23	1079	1101	1079	1101	0.96
8	8	7.6e-08	5.5e-06	26.4	0.7	1	23	1107	1129	1107	1129	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATCAATTACCGTGGGACTGGCGGCACCAGGAGCGGCAGCGGGGAGCGTGACAGGGATCGAGAGAGGGACCGAGACCGGGACAGAGACCGGGACCGAGATCGGGAGAGGGACACCCTGCTGGCCAAGGAGCTGGATGCGGACAGCAATAACAATGGCACCGAGGCACCGCAGGTGGAAACGGAAGTGGAAGCAGCTCCCGACTGCTCCGACACGGAAAGGGAGACGGAGCAGGAGCCGGAGCAGGATCAGGAGCTGGACAACAGCAACGAGGCGCTCGATCTCTCGGTGATCTCGGCCAGCGGCCAGCGGGGATCGCTGCCGGGCAGTGGTCACGTCTCGCTGGAGGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTCGCGGCCTCAGCGCTGTCCGGTGGAGGCGGCGGCCAGTCCGCCGACCTGGCCATGGTCCAGTCCACCATCTTCAATGTGCAGCGACAGCATCTGATGCAGCTGCAGCTCATCCAGCACCTGCAGAGTCAATTGAAAAGGGCCGAGGCCGTGGCCCTGGGCAGGCCAGTCCAGAGCGACGAGGAGGAGGAGGAGGATGAAGCTGAGACGGAACCGGAACCGGAACCCAAAGTGGAGCCCAGCAATGGCCTCAAGGAGGAGGCCCCGGAGCAGGAGAGGGCGGGGGAACAGGAACAAGAGCGTGAAAGGCTACCGGAGCTGGAGGAGAGTTCAAAGACTGACAAGGCGACGACTGAGGAGAGAAGCAGAAAGCAGGCGGAGATTGAGGGCTCCGACTACCAGCCACTGATGTGCGACATCAGCTCGAGCTTGGCCTCGAGCATCATCACCAACCACGATCCCCCGCCGGCCCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGCCGCACGGAGGAGGTCCTCGACTCCGCCTCCCAGAGCCTGCACGCCGCCCAGCTGCAGGAGGAGTACTCGGAGTATGCCTCCAAGGAGGCCCAGAGCCGGGGCGAGATATTCAAGCACCGCTGCAAGTACTGTGGCAAGATCTTCGGCAGCTACTCCGCCCTCCAGATCCACCTGCGCTCGCACACCGGTGAGCGGCCCTTCCACTGCAACGTCTGCGGCAGCAAGTTCACCACCAAGGGCAACCTCAAGGTCCACTATCAGCGGCACACGCAGATCTTTCCGCCCATGCTGATGCCTCCGGGAGTGGCACCCAACGTGGGACAGGGACAGGGTCAGAGTCAGGGTCAAGTCCCAGCCGAGCAGTTCCCCATGCGACTGCCCTTTGTGCCGCCAGCGATTCCAGCAAGTCAGGAGCAGCAGGTCCAACAGCAGGCAGAAGAGCAGGAAGAGATCAAGTCGGAAATACCATCTCAGCAGGCCGAAGATCTCAGCAGGCCGGCGGTGAGGGAGAAGGAAAAGATGCAGGAGAAGTCCCACTCGCCCGTGGAGCGTGTCAAGACCCCCAAGGCAGTGGCACCCGAGGTGAAGCCCAGGCCACCACCCATCCCAGCTGAACCCTCCCCCGAGAAACCCGAGAAGGAAGCTGCTCCTCCCAAGCCCGCGATGACTCCGTCTCGCAGGAATGGCTCCGTGCGCAAGCGACAAACCAGCAGCGCTGGAAGCCCACCCCAGGAGGACAGGGAACGTGATCTCGCCGAGCATCTGCACATAGCCAAGCTGGTGAGGCGCTCCTCCTCGAGCCGAGAGTCCCAGCAGCCGGCCGAGTACTCCCTCGCCCAGATGGAGCGCATCATCGACAAGTCCTGGGAGGATCTCATCGAGATTGACAAGACCTCGGAGACCTCGAAGCTGCAGCAGCTGGTGGACAACATTGAGAACAAGCTGACCGATCCCAACCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCCCTGCAGATGCACATCCGCACCCACACCGGCGAGCGACCCTTCCGCTGCAAGATCTGCGGAAGGGCCTTCGCCACCAAGGGCAACCTCAAGGCCCACATGAGCATACACAAGATCAAGCCGCCGATGAGGAGCCAGTTCAAGTGCCCCGTCTGCCACCAGAAGTTCTCCAATGGGATCATCCTGCAGCAGCACATTCGCATCCACACCATGGACGATGGTGGTCAGGGCGGTGCTAACCCAAATCCCGGCGAGGCTGAGCGGCTGGGCATCGAAGATCAAAACTCGAACAAGTCCATGGGCACCTCCGATACCCTGGACTTCTCCACCACCATTTCGGATCACTCGGGCCAGAGGTCTGAGTCCTCGCAGGGCGGTGACTTTGACGAGTTCATGACCATGGACAGTACCGATGACTCCAGGGATAATTCAAGTGCGGCCACGGCCACGCCTCATCTGCTGGAGCGCGATAGGGAGCGGGACCGAGAGCGAAGGCCACCCCACGATGGCTCCGATGAGAGATCCCACTCCAATCCCGACCTGGGCGGAGGAGCTCGTTCTGAGAGCGGCGACATGCCCGCCATGGATCTGTCCTCGCCTTCGTCAGCCTCTGGTCGCATTTTCGGCGCTGGAATGGTCAATGGTTCGGGGGGTGGAGGATCTGGAATGCCCATGCTGGGAATGCCCATGCCCCCGAATCTCCTGCTCATGGCGGCTGCCCGCGAGGAAATGCATGCCCTGGGTCATGCCCATGCCAAGTTCCCGCTGCTGCCCTTCGGTCCTCTGGGATTTATGGGCCTGCACCCGCCCCCCAATGTGTGCAATCTCTGCTTCAAGATGCTGCCCAGTTTGGCTGCCTTGGAGAGTCATCTGCAGAGCGAACATGCCAAAGAACCGGCCACGGGCCATGCCCATCGCCCACAATGCAACGAAGCTGGAACACCATACGGTGCCAAGCTCACTCTCAACCCAAATCTGTTTGCAAAGAAGCCGCCTTCGACGGGTGACAAGCTGCCGCCGGAATCGTCACCCCGCCCGATGTCCCACAACTCGGAGGTGGCCTCTGCTGTCACACCTGTCAAGGAGGAGCAGCCCGATCAGGATCATCTCACCCTGGAGGAGGGTGCCTCAACTGCAGGCGAAGGCTCTGCGGCAGGTCCTGGCGGGGGTCCTTCTAGTTACCCGCAGGAAGCCGGCGATGCCGAGCAATCGCTGATGAAGATGCAGCTACATGCCCATCGCTTTCCGGCCAGTCCCCTTGACTTTCAGCAGGCCCTGATGTCCGCCGGTCCGCCCAGCTCTAGCCTGGATCCGCCGGTGAACAACAAGCATTTCTGCCACGTCTGCCGGCGGAACTTCAGCTCCAGTTCCGCCCTCCAGATTCACATGAGAACCCACACGGGCGACAAGCCCTTCCAGTGCAATGTCTGCCAGAAGGCCTTCACCACCAAGGGGAATCTCAAGGTACACATGGGCACTCACATGTGGACGAATCCCACTTCGCGGCGAGGACGTCGCATGTCCCTGGAGCTGCCCATGCGTCCTGGCCCAAATCAAAGCACTGGACATCCAGGTTCAAGTGCCGAGCAGGAGTTTATGCAGCGAAGACCAGAGCTCTTCTTTCCCTACCTGCCGCCCTTTTTTAATGGATTGCCGCCAAAGCCTGGTGAACTAAGTCCCGGCGCCTTTCCCAACATCCCTCCGCCGCCCTTTGCCAACGGAGGCAAGTATCCCTATCCACCGGGTCTGCTAGGCTTCCCTGGATTCCTGGGACAACATCCTTATGGCCTGGATAGGCGGAGCAGCAGCAAGTCACCTACGCCAGAGCCAGCCCAGAGTCCCTCCTTGAGAGAGGACGAAATGGTTGCCGGCAGCATTTGGCATCCGCTGAGCAGGATCAAGGTGGAGGGCAACCAAAGCGAGGCCCTGCTCCAAGAGCAGGATGACCAGGCGGAGGCTGAGACAGAGGCCGCCGGGGGTGGAGACTTGGAGGAGTCGGAGTCAAGAGATGGGGAGAAGTAA
Protein Sequence: MCSIFRNRINYRGTGGTRSGSGERDRDRERDRDRDRDRDRDRERDTLLAKELDADSNNNGTEAPQVETEVEAAPDCSDTERETEQEPEQDQELDNSNEALDLSVISASGQRGSLPGSGHVSLEALQHTKVAVAQFAASALSGGGGGQSADLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAVALGRPVQSDEEEEEDEAETEPEPEPKVEPSNGLKEEAPEQERAGEQEQERERLPELEESSKTDKATTEERSRKQAEIEGSDYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQLQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPGVAPNVGQGQGQSQGQVPAEQFPMRLPFVPPAIPASQEQQVQQQAEEQEEIKSEIPSQQAEDLSRPAVREKEKMQEKSHSPVERVKTPKAVAPEVKPRPPPIPAEPSPEKPEKEAAPPKPAMTPSRRNGSVRKRQTSSAGSPPQEDRERDLAEHLHIAKLVRRSSSSRESQQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGGQGGANPNPGEAERLGIEDQNSNKSMGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHLLERDRERDRERRPPHDGSDERSHSNPDLGGGARSESGDMPAMDLSSPSSASGRIFGAGMVNGSGGGGSGMPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEPATGHAHRPQCNEAGTPYGAKLTLNPNLFAKKPPSTGDKLPPESSPRPMSHNSEVASAVTPVKEEQPDQDHLTLEEGASTAGEGSAAGPGGGPSSYPQEAGDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNQSTGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFPNIPPPPFANGGKYPYPPGLLGFPGFLGQHPYGLDRRSSSKSPTPEPAQSPSLREDEMVAGSIWHPLSRIKVEGNQSEALLQEQDDQAEAETEAAGGGDLEESESRDGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527496;
90% Identity: iTF_00527496;
80% Identity: -