Basic Information

Insect: Drosophila incognita
Gene Symbol: -
Assembly: GCA_035042225.1
Location: JAWNLQ010000155.1:1159468-1162156[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.5 2.3e+02 2.6 2.6 2 23 333 355 332 355 0.95

2 10 8.1 5.3e+02 1.5 1.2 2 23 374 396 373 397 0.80

3 10 0.0064 0.42 11.2 0.5 3 23 413 434 411 434 0.94

4 10 0.00017 0.011 16.2 0.2 1 21 498 518 498 519 0.96

5 10 0.43 28 5.5 2.6 3 23 528 549 526 549 0.94

6 10 9.3e-06 0.00061 20.2 1.7 1 23 555 577 555 577 0.98

7 10 0.0048 0.32 11.6 0.5 1 23 582 605 582 605 0.96

8 10 0.13 8.7 7.1 0.6 2 23 613 635 612 635 0.95

9 10 1.2 76 4.1 0.5 2 23 642 663 641 663 0.94

10 10 0.0017 0.11 13.1 1.5 1 23 668 691 668 691 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.5	2.3e+02	2.6	2.6	2	23	333	355	332	355	0.95
2	10	8.1	5.3e+02	1.5	1.2	2	23	374	396	373	397	0.80
3	10	0.0064	0.42	11.2	0.5	3	23	413	434	411	434	0.94
4	10	0.00017	0.011	16.2	0.2	1	21	498	518	498	519	0.96
5	10	0.43	28	5.5	2.6	3	23	528	549	526	549	0.94
6	10	9.3e-06	0.00061	20.2	1.7	1	23	555	577	555	577	0.98
7	10	0.0048	0.32	11.6	0.5	1	23	582	605	582	605	0.96
8	10	0.13	8.7	7.1	0.6	2	23	613	635	612	635	0.95
9	10	1.2	76	4.1	0.5	2	23	642	663	641	663	0.94
10	10	0.0017	0.11	13.1	1.5	1	23	668	691	668	691	0.97

Sequence Information

Coding Sequence: ATGGCCGCCGCAGCGGATGCTGCAAAATGGAACGCGTTGCTGGCGACGAACAAAGCGAACAATACAAAATGCCGCACTTGCCTCGCCGTCGGTCGCCAGACGGTCAAACTGGATACGAAAATACCGGAACTGAAGAAAGTGCGCACCTACGGTCAGGGATTGCGCCAGTGCACGAATATACCGTTAACCGCTCGCTCCGCCGGCGGCTACAGGTGGCCCATGCAGATCTGTTTGCGCTGCTGTCGCGCCCTCGAGGTGGCCGTGCATTTTGTGGAACTGACACTGGAATCGAATCGGAAATTGTTTGCTGAATCGCAAATTGTCAAGCcggtgacgacgacgacgatgaagGGTGCGTCGGGTGAGCTGAAGCGCAAGGCGAGTGGCAGCAGTGAGATGTTGAATTGGAATCAATTCAGTCAGGAGTTTGAACAATTTGTGGAGAGCTACGATGGGATCACAGCGCCCATTGAGGAGAATGTGCTGTATATGCGGGGTGCCAAAGTGCCACGCCTCGATGCGGACATAGCAACCAACCGGCAGCCACCCGAGGAGGATGATGTCATCTTATTTGATGTAAAGTATGATAGCAATGATCAAGATCAGGAGGATGAGAACGATGGCTCCGATGCGAAGAACAGCGAAACCTTCTATGACACTAGTATTATAAATGAGAACAACCAATCAGTCGCGGCTGGCATTAAGAACAGCgccgagaacaacaacaattataatttcaacaacaagaatGGGGATGTGGAGAGCGATCTCATCCAGCGTGCCCTCTTCATGACGCTCAACGATGatgtcaacaacagcagcagcagcagccaaacaacaacgTACGATTTACAATGCATTGAGTCCATCAAAGCcacattattaaaatCTTTGGAGGAAGAGCAGCTGGAAGGGACAAGTGGCAACGGCTTGATTAGCAGTTTGACCAGCAAATCAACGCCCAGCAGGGAGATCAATGTCCAGATACCGCTGCTCAGCTGCAGCATGTGCAAACAGACGCACACAGAGGCCAAACAGATGAGGACACACTATATGCGTGCCCACAGCTGTGATGTGCCCGAGGATGATATCATTGGCCTGACAAAAAATCAAAGCTTTAAGTGTCGTCCATGCAATGATTATGTGACAAACAGTCGCTCGGATATGCAACAGCATCTGATTGAACATCATAAAATCGATGGGGATTTTGAAATGTATTGTTATGTGCAGCAGAATTGTCCCGCCTGTGGGCGCATCTTCAAGGATCAGCGCTCAGCACGCACACActacacacgcatgcacacaccacaacagcaacaacaacaacagcaacaacaacaacagcaacaacagcaacaacagcagcatcaacagcagcagcaaccacaacaacaacaacagcagcatcaacagcagcagcaaccacagcaacaacaacaacagcagttgcagcaacaatctGCCAATTCAGTCGAGCAGCAGCCTCAACAATTTGTGTGCACCGCCTGCGATAAGGTATTCAATTTAAAGGGCAGCCTGCAGGCTCATCAACGTTTCTGCCAGGTGAAGCAGCCGGTGCACTGCACCTTCTGCAAAGAGCAGTTTAGCAGCATACGCAAATACGAGTTGCAcctccaacagcagcacgcTGTGCACACTTTGCACGAATGCGAGATATGCCTGAAGAGTTTCAAGAATAGCGATTCGCTGGCTGTGCATCGCAAGCGGCACTCGGAGCGACATTTTCACTGTGACAAGTGTTCGCTGAACTACATCAATGCCGCCGAGTTGCGGGTGCACTACGAGCGTGCCCATGTCCACGAGGAGCAAGTGGTCACCTGTCGCAGCTGTGACAGCACATTTCAGAATTACGCACTGCTCCGCGAACACGAACAGCGCTCGCATCAAAAACTCAAGATTTGGCGCTGTGACAATTGCAGCTTTGAGGCGAACTCGCGTGCTCGACTGCGTCAGCATCAGTACGAGCACATGGACTATCCGTACAAGTGCCAGCACTGTCCTGAGGAGTTTGCTGATCGCGGAAAAATCCGTCAACATTCCAAGAAGGTGCACTCGGTGGAGCTGAGCGATGATCAGCTGGCGGATATGTTTCGGGAACGCATCGGCTACACCAATCGCCATGATGCGTTCAGTAAGTCGAACAACTCACTGGAGATACCCGGTTTTAGTGATGATTGCTTTACGGAGCTGAAGAGTCTGGGCCTGGACTATGATGATATAACAACCGATCTCTTCTCGAATTCCATTAGCGCACTGGACACTCTGCTCGAATTGGTACCCTGA
Protein Sequence: MAAAADAAKWNALLATNKANNTKCRTCLAVGRQTVKLDTKIPELKKVRTYGQGLRQCTNIPLTARSAGGYRWPMQICLRCCRALEVAVHFVELTLESNRKLFAESQIVKPVTTTTMKGASGELKRKASGSSEMLNWNQFSQEFEQFVESYDGITAPIEENVLYMRGAKVPRLDADIATNRQPPEEDDVILFDVKYDSNDQDQEDENDGSDAKNSETFYDTSIINENNQSVAAGIKNSAENNNNYNFNNKNGDVESDLIQRALFMTLNDDVNNSSSSSQTTTYDLQCIESIKATLLKSLEEEQLEGTSGNGLISSLTSKSTPSREINVQIPLLSCSMCKQTHTEAKQMRTHYMRAHSCDVPEDDIIGLTKNQSFKCRPCNDYVTNSRSDMQQHLIEHHKIDGDFEMYCYVQQNCPACGRIFKDQRSARTHYTRMHTPQQQQQQQQQQQQQQQQQQQHQQQQQPQQQQQQHQQQQQPQQQQQQQLQQQSANSVEQQPQQFVCTACDKVFNLKGSLQAHQRFCQVKQPVHCTFCKEQFSSIRKYELHLQQQHAVHTLHECEICLKSFKNSDSLAVHRKRHSERHFHCDKCSLNYINAAELRVHYERAHVHEEQVVTCRSCDSTFQNYALLREHEQRSHQKLKIWRCDNCSFEANSRARLRQHQYEHMDYPYKCQHCPEEFADRGKIRQHSKKVHSVELSDDQLADMFRERIGYTNRHDAFSKSNNSLEIPGFSDDCFTELKSLGLDYDDITTDLFSNSISALDTLLELVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560615;
90% Identity: iTF_00525464;
80% Identity: -