Basic Information

Insect: Drosophila incognita
Gene Symbol: salm
Assembly: GCA_035042225.1
Location: JAWNLQ010000621.1:141148-148665[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.6e-06 0.00017 21.9 1.7 1 23 367 389 367 389 0.98

2 8 3.7e-05 0.0024 18.3 3.5 1 23 395 417 395 417 0.98

3 8 2.5 1.7e+02 3.1 2.5 5 23 656 674 653 674 0.84

4 8 3.8e-08 2.5e-06 27.7 0.2 1 23 680 702 680 702 0.98

5 8 0.0011 0.075 13.6 0.9 1 23 712 734 712 734 0.98

6 8 0.058 3.8 8.2 0.1 2 23 941 963 941 963 0.96

7 8 1.2e-05 0.00081 19.8 5.0 1 23 1110 1132 1110 1132 0.96

8 8 9.9e-08 6.5e-06 26.4 0.7 1 23 1138 1160 1138 1160 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.6e-06	0.00017	21.9	1.7	1	23	367	389	367	389	0.98
2	8	3.7e-05	0.0024	18.3	3.5	1	23	395	417	395	417	0.98
3	8	2.5	1.7e+02	3.1	2.5	5	23	656	674	653	674	0.84
4	8	3.8e-08	2.5e-06	27.7	0.2	1	23	680	702	680	702	0.98
5	8	0.0011	0.075	13.6	0.9	1	23	712	734	712	734	0.98
6	8	0.058	3.8	8.2	0.1	2	23	941	963	941	963	0.96
7	8	1.2e-05	0.00081	19.8	5.0	1	23	1110	1132	1110	1132	0.96
8	8	9.9e-08	6.5e-06	26.4	0.7	1	23	1138	1160	1138	1160	0.98

Sequence Information

Coding Sequence: ATGTGTTCCATATTTCGCAATCGCATCAATTATCGGGGCACAGGAACACGCAGTGGCGCCTCCAATGgcggaggaggtggaggaggcggaggcagcagcacagaTCCCACCGGCGAACGGGATAGTCTTCTGTCCAAGGAACTGAATGCggacagcaataacaatgcgGCGGATGAGACAATCGAGCCGcaaatggagatggagatggagctgcagctggagaaggagagggagagggagaaggagAAACAGTCGGAGACATCAGTGCCCAGCTCCGATCAGCCAGAGAACAGCAACGAGGCATTGGATCTGTCTGTCATCTCGGGCAATCGGCTGCCTAGCAGTGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCTGTGGCTCAGTTTGCGGCCACGGCGCTGGCGGCGGCATCCACGGATCCCAGTGATCTGGCCATGGTCCAGTCGACCATCTTCAATGTGCAGCGACAGCATctgatgcagctgcaactcATCCAGCATCTACAGAGTCAATTGAAGCGGGCGGGGGGCGTGGTCGCCGCCCTCAGCCGGCAGGGCCAAAACTATGCCGAGCAGGATGAGGATGAAGCGGGCGAGGAGGCAGAAGATGTGGAAGActtggaggaggagcagcaactgTCGATGCCATCCAAAGAAACGTCGCGAGTGAACGGGGAGCGAACCGAACTGGATCATGCAAGGCTGGAGGAGAGTTCAAAGACTGATGACGAGTGCAATAGGCTGGGAGAGAGACCAAGCCGAGACTTGGCCAGGGAAAGAGTCCGGGAGACGACCAAGATGGAGGCTGCGGCAGAGGGGGAGACTGCAGGCGAACTTGAGCACGAGCTGGCCGAGAGCGAGTACAAGCCGCTGATGTGCGACATTAGCTCCAGTCTGGCGGCCAGCATCATCACCAATCATGATCCGCCGCCAGCGCCCAATGAGCCCAACTGCCTCGAGATGCTGCAGCGTCGCACCGAGGAGGTGCTGGACTCGGCATCGCAGAGCCTGCACGCCGCCCAAATGCAGGAGGAGTACTCGGAGTATGCCTCCAAGGAGGCGCAGAGTCGCGGCGAGATCTTCAAGCATCGCTGCAAATATTGTGGCAAAATCTTTGGCAGCTATTCGGCGCTCCAAATCCATTTGCGTTCGCACACCGGCGAGCGACCCTTCCACTGCAACGTTTGCGGCAGCAAGTTCACCACCAAGGGCAATCTCAAGGTGCACTATCAGCGGCACACCCAGATCTTTCCGCCCATGCTGATGCCAGCCGTGGCAAATGGAGTCACTGCACCCGAGCAATTTGCCGCCATTCGACTGCCGTTTGtgacaccagcagcagcagcagctgcaccacTGGCAGCAGCcctaccaccaccaccaccaccaccacccccgccgccgccgctgccgcccaGCGAACAGGAGCTGCAGGAGCCGGCAGCTGTAGGTCGACTGCAGCAGGCCGAGGATCTGAGCAAGCCGCTAGCCAGAGAACTGTCGCAGTCGCCCGAGCAAGTCAGCCAAACCAAGTCGCTTATGGAGCCAATCGCTTTGGTGACGCCCGAGAAACAGGacaaggagcaggagcagacgAAGAACAGTCCCAAGCCAACGACGCCGCCAACGCCAGCAGCGCCCTCGCCAACCACAAGCAATCGTCGCAATGGCAGTGTTCGCAAGCGACAGACCAGCCAGGCGGGCAGTCCACCTGGCGAGGAGCATCCGCATGCCGAGCACCACTCGCACCTGGTCAAGTTGGTGCGTCGTTCCTCGGCGAGCCGGGATGGGTTGACGGCGATGCCCGGCGAGTATTCGCTGGCGCAGATGGAGCGGATTATTGACAAGTCGTGGGAGGATCTGATTGAGATCGACAAGACGTCGGAAACAtcgaagctgcagcagctggtcGATAATATCGAGAACAAGCTGACCGATCCCAATCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGTCGCAGCTCCCTGCAGATGCACATACGCACCCATACCGGCGAGCGACCCTTTCGCTGCAAGATCTGCGGGCGCGCCTTTGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATCCACAAGATCAAGCCACCGATGCGCAGCCAGTTCAAGTGTCCCGTGTGCCATCAGAAGTTCTCCAACGGCATAATTCTGCAGCAGCACATACGTATCCATACCATGGATGATGGCAGCGCTGCCCATGCTCAGCTGGCGGGTCAAAGTGGGGATGTGGAACGCTTGGGCATCGAGGATCAGAACTCGAACAAGTCGCTGGGCACCTCGGACACGCTGGACTTCTCGACGACCGTCTCGGATCATTCGGGTCAGCGATCGGAGTCGTCGCAGGGTGGCGACTTCGATGAGTTCATGACCATGGACAGCACCGATGATTCCCGTGACAATTCCAGCGCAGTGCTCGATAGGGAGAGAGATCGAGATAGAGATCGAGATCGAGATAGACGCATGCCTGGGCACGATGATGAGCGCTCCCGTTCGGATGATGTGGAGGGCAGCGGACGCGAAAGTGCCAGCGGCGAGATGCCCGCCATGGATCTATCATCGCCATCGCTGGCGCGTCTCTTTGGCGGCAACAGCGGAGCAGccggagttgctgctgctgctgctgccggttCAGGCGGCTTGCCCATGTTGCATGGCATGCCGATGCCACCgaatctgctgctgatggccGCCGCCAGGGAGGAGATGCATGCGCTGGGCCAGACGCATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTCGGATTAATGGGACTGCAGCCGCCCCCAAATGTGTGCAATCTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCCTCGAGAGCCATCTGCAGAGCGAACATGCCAAAGAAGTGACGGCTCCTTCCGTTCGAGCCCACTGCAACGATGCGTTATCATCCTACGGTGCAAAGCTCACTCTCAATCCGAATCTGTTTGCCAAGAAGCCGAAGCCATGCTCAACGCTGGAGATGGCGCCTGCGGATGCAGTCATGCCATTGACGGCACCCATTAAAGAGGAGCCCGAAtccgagcagctgcagctgctcgatGAGGCTGGCTGCGATAGTCGCACAAGTAGTggtacttctgctgctgccccggctccagctgctccagctggctatcagcatcagcaggagGCTGCCGCCGATGCGGAGCAATCGCTAATGAAGATGCAGTTGCATGCACATCGTTTTCCGGCTGGTCCGCTCGACTTTCAGCAGGCCCTGATGTCGGCCGGCCCGCCCAGCTCTAGCCTGGATCCGCCGGTGAATAACAAGCACTTCTGCCATGTCTGTCGCCGCAATTTCAGCTCGAGTTCGGCACTCCAGATTCATATGCGCACCCACACCGGAGATAAGCCGTTTCAGTGCAATGTGTGTCAGAAGGCCTTCACCACGAAGGGTAACCTTAAGGTTCACATGGGCACCCATATGTGGACGAATCCGACATCGCGTCGCGGCCGTCGCATGTCCCTGGAGTTGCCGATGCGGCCGGGACCTGGCCCGGGCCCGGGACCCGGTGCCCCACATGGTGTGCCAACCGCTGAGCAGGAGTTCATGCAGCGACGCCCAGAACTCTTCTTCCCCTATTTGCCACCCTTCTTCAACGGAATGCCACCCAAGCCAGGCGAATTGAGTCCTGGCGCTTTTGCCAACATACCTCCACCGCATTTTGCAAACGGAGCCAAGTATCCATATCCACCGGGTCTGCTCAGCTTTCCCGGCTTTCtaggtggtgctggtggtcaTCACCAGCATCCCTATGGCGGCGTGGAGCGGGGCAACAGCAAGTCACCCACATCGGAGCCGGCGCAGAGTCCTGCTTCGCGTGAGGACGACTCGGGTCTCAGCAATAACATCTGGCATCCGCTGAGCAGCATTAAGATGGAGAGCAATCAAAATGAGGGCGCTGGCAATCAGAGCGAGCAGGATCAGGAGCCGGAACTGGAGCAGGATCACGAGGATAATAAGAGCGTGGGCATCGATGCCGATGGCGAGCCTGAGGCGGACGCTGAAGATTCAGCTGAGAAGTAG
Protein Sequence: MCSIFRNRINYRGTGTRSGASNGGGGGGGGGSSTDPTGERDSLLSKELNADSNNNAADETIEPQMEMEMELQLEKEREREKEKQSETSVPSSDQPENSNEALDLSVISGNRLPSSGHVALEALQHTKVAVAQFAATALAAASTDPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQNYAEQDEDEAGEEAEDVEDLEEEQQLSMPSKETSRVNGERTELDHARLEESSKTDDECNRLGERPSRDLARERVRETTKMEAAAEGETAGELEHELAESEYKPLMCDISSSLAASIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPAVANGVTAPEQFAAIRLPFVTPAAAAAAPLAAALPPPPPPPPPPPPLPPSEQELQEPAAVGRLQQAEDLSKPLARELSQSPEQVSQTKSLMEPIALVTPEKQDKEQEQTKNSPKPTTPPTPAAPSPTTSNRRNGSVRKRQTSQAGSPPGEEHPHAEHHSHLVKLVRRSSASRDGLTAMPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSAAHAQLAGQSGDVERLGIEDQNSNKSLGTSDTLDFSTTVSDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAVLDRERDRDRDRDRDRRMPGHDDERSRSDDVEGSGRESASGEMPAMDLSSPSLARLFGGNSGAAGVAAAAAAGSGGLPMLHGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTAPSVRAHCNDALSSYGAKLTLNPNLFAKKPKPCSTLEMAPADAVMPLTAPIKEEPESEQLQLLDEAGCDSRTSSGTSAAAPAPAAPAGYQHQQEAAADAEQSLMKMQLHAHRFPAGPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPGPGPGAPHGVPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANIPPPHFANGAKYPYPPGLLSFPGFLGGAGGHHQHPYGGVERGNSKSPTSEPAQSPASREDDSGLSNNIWHPLSSIKMESNQNEGAGNQSEQDQEPELEQDHEDNKSVGIDADGEPEADAEDSAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00525326;
90% Identity: iTF_00558916;
80% Identity: -