Dhyd004484.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila hydei
Gene Symbol
ZIPIC
Assembly
GCA_003285905.2
Location
NW:1921925-1923494[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 6.7e-05 0.0038 17.1 0.3 2 23 248 270 247 270 0.96
2 7 0.0013 0.076 13.1 0.2 1 23 274 296 274 296 0.97
3 7 2.2e-06 0.00013 21.8 3.9 1 23 302 324 302 324 0.97
4 7 1.6e-05 0.00092 19.1 2.2 1 23 330 352 330 352 0.98
5 7 2.4e-05 0.0014 18.5 2.5 2 23 360 381 359 381 0.97
6 7 8.4e-07 4.8e-05 23.1 0.6 1 23 387 409 387 409 0.97
7 7 0.22 13 6.1 5.2 1 19 420 438 420 441 0.95

Sequence Information

Coding Sequence
ATgaattgttgcatttgccagTTCTCTGTGCGCAACCCAAAAAACATATACGAGGAGACGATTGGAAAGCCGCCCATTTTAATCAGCGACTTGGTCGTGCAATGCACGAAGGGCACGAACTATGTGCTCGGCGAGGTGGGCTCGACAATATGCAAGAAATGCTGCGAGAAGTTGTCTCGCTATCACAAATCCCTACAAATCGCGCGGAAACTGCGTCAGGAAATTCTCGAACTAATACAAAGTCCATTTATAATCAAGGATTTCAAATCGGCGATCTCACGAAGTGAACACAAAAGCGATGACCCTGAAAAATTTGATGGCAGCATCAGCGTCGAAATGGTCGAGACTGTGGATGCAGCTGATTTGGATGACGGAACAGATGCGATGCCAGTTGTTAAGCCGACAATTGTGGATCCAACGGTGGTGacggaggaggaggaggaagaggaggaggtGGAAGAGGAGCATGATTTTATAGAGAAGAATTCCGATTGTGAGGAAGAGGAATTCCAAGCGGTTGACTTGGAATTAGATATTGAGAATGagataattataaatgaagaGGTGCCTGAAGCAGACTTGGACGATGATGAGACGAAGCAAACAGCCgatgaaatggaaatgtttAGAGAGGACAAGGATATGTTAAGTGAGTTCGAGGATCAAATGGATGGCACTATCGAATACCTAATCTCAGATGCAGAGGATCAGGACAGTTCGGGCGACTATACGGTAAACATACAATGTCCAAACTGTCCCGAACAGTTCAGCAGTCGTCGAGCATACAATGCGCACACGAAACGTGAACATTTCCCTGGCTATGTGTGCGATCAGTGCGGCAAGACGTTGCAATCCTATTCAGGATTCATTGGTCACTTGCAGAACCATGAGCCAGTCAAACAGTTTGAGTGCCCCCATTGTGGCGAGCGTTTTAGTCGCAAATTTCGACTGAAACATCATATGGCATGGCATACAGGCGAAACGCCGTATCAGTGCGAGGTCTGTTCGAAACGTTTCGTTCATAAGGTGGCGCTGTATAAGCACAAAATGATCCACGACAGCGAATCGAAGCGGCTGGAGTGCCAGGTCTGCGGCTTCAAGACGCGCACCAAAGCCCATCTGGAGCGGCATACACGCTCCCACACGGGAGCCAAACCGTTCGCCTGTCCTGTATGCAATAAGCGTTTCTCCCAAATGTACAATATGAAGGCGCATCTTCGAGAGCACGAGAATCCGGGCAGCAATCGACACAGACGCTTCCACTGCCCCAAATGCACGCACACGTTCATCAATGAACAGAACTATTTAAGTCATTGCCAGCGGGACGATTGTACGCCAGTCTAG
Protein Sequence
MNCCICQFSVRNPKNIYEETIGKPPILISDLVVQCTKGTNYVLGEVGSTICKKCCEKLSRYHKSLQIARKLRQEILELIQSPFIIKDFKSAISRSEHKSDDPEKFDGSISVEMVETVDAADLDDGTDAMPVVKPTIVDPTVVTEEEEEEEEVEEEHDFIEKNSDCEEEEFQAVDLELDIENEIIINEEVPEADLDDDETKQTADEMEMFREDKDMLSEFEDQMDGTIEYLISDAEDQDSSGDYTVNIQCPNCPEQFSSRRAYNAHTKREHFPGYVCDQCGKTLQSYSGFIGHLQNHEPVKQFECPHCGERFSRKFRLKHHMAWHTGETPYQCEVCSKRFVHKVALYKHKMIHDSESKRLECQVCGFKTRTKAHLERHTRSHTGAKPFACPVCNKRFSQMYNMKAHLREHENPGSNRHRRFHCPKCTHTFINEQNYLSHCQRDDCTPV