Dham011940.1
Basic Information
- Insect
- Drosophila hamatofila
- Gene Symbol
- -
- Assembly
- GCA_035045345.1
- Location
- JAWNPA010000039.1:1428662-1430029[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.036 52 4.1 0.3 6 25 22 39 21 42 0.85 2 9 5.3e-07 0.00077 19.6 2.1 14 44 168 195 161 195 0.88 3 9 7.8e-06 0.011 15.9 1.1 12 43 222 250 218 251 0.89 4 9 2 2.9e+03 -1.5 0.1 18 28 259 269 255 281 0.82 5 9 0.25 3.7e+02 1.4 1.7 16 37 283 301 273 307 0.78 6 9 9.3 1.3e+04 -3.6 4.4 12 41 337 363 327 364 0.69 7 9 0.073 1.1e+02 3.2 0.1 19 39 372 389 370 399 0.82 8 9 0.0067 9.7 6.5 0.5 18 38 399 416 393 416 0.84 9 9 0.006 8.7 6.6 0.9 14 40 423 446 413 449 0.70
Sequence Information
- Coding Sequence
- ATGCTGAAGGCACTCAAGCCGGACACATTTGCCGGCACTGCCAATGCCAAGTGCGGGGAGGTGTATTTCCAAAGTCTAAACAGCTATCGCATTGATTGCGCCTTCTGCCACATGAAGACCTTTGTGTTTGGCGACTTTCTGCTGCACATTCAGAACGAGCATTTCGAGGATGGGCTGCTCAAGGCGGATGTTATGCTGCCGAAGCAGGAGGACATGGACAACAGCACCACAGCGAACCAAACGAATCTGTTTTCTTGGTATGAAGTGACGACTAATGAATACGACTTGGCTGGCAACAGCGGGACTGAGCTTCTGGGCGAGACTAAGCAGTTGGTGgacgccgacgacgacgatgacgaagaGGCGGATGAATTGGAGGATCCCGTTGGCATTATGAAGTGGAATCTGTCGACGGAGTGCCTATACAATGAGCACATAGTATCAGATGCTGACAATTCAGATGCCAtaggccagcagcagcaggcaccaCTCAGGGCCACAAAGGAGCAGCTGGTCTGCATACACTGCAACAAGACGTATCAGAACAAGAAGTCGCTGCAACGCCACATGGAGCGACAGCACAAGTATGCTAACGCCGTCTCCGAAGACGACGTGGTTGTGGACATTGACGCAGACTACGAGCCGCCCAAGGTGCACGCGCCCAAGCCATCTACCAAATTCAAATGCGAGCACTGTGACAAGGTCTATCACGGCAAGTACACGTTGCGGCAGCATGTGAAGCGGGACCATGACATCAGCCTGAGCGACGCCTTTGTTTGCCTCGAGTGCAACGCGCAGCTGCCACGGCTGCGCCTGCTGGACGAGCATGTGGTGAAGGTGCACGGCGGCGCGCCCTGTGTGATATGTAATCGGCGCTACAAGACGCGCCACGAGCTGAAGCGCCACCAGCTGAAGCACACAAATGAGCGCGATGTGCCATGCAGCCATCCGGGCTGCGAGAAGCGCTTTTTTACCACGCGGCACATGCGGAACCACAGCAAGGTGCACTCGGAGCAGAAGAACTTCGTATGCGAGAGCTGCGGCTACAGCTGCCGTAATAAGGAGACTCTGCGCGTCCACTTGCGCAGCCACACAGGCGAGCGTCCGTTCGGCTGCAAAGTGTGCGACAAGCGGTTCCCCTCTCACTCGGGTCTGCGCGAGCACATGGCCATGCACTCGACAGAGCGGCCGCACGTCTGCAAGGTATGCGGCGCTACGTTTTCCCGCCAGAAGGGACTCTACCACCACAAGTTTTTGCACGCGGCCACGAAACAGTTTGTGTGTAAGCTGTGCGGCAATGAGTACGCACAGGCAGCGGGTCTGGCGGGGCATATGCGAAAGCATCGCAACGATGAGCTCAATGGCTGA
- Protein Sequence
- MLKALKPDTFAGTANAKCGEVYFQSLNSYRIDCAFCHMKTFVFGDFLLHIQNEHFEDGLLKADVMLPKQEDMDNSTTANQTNLFSWYEVTTNEYDLAGNSGTELLGETKQLVDADDDDDEEADELEDPVGIMKWNLSTECLYNEHIVSDADNSDAIGQQQQAPLRATKEQLVCIHCNKTYQNKKSLQRHMERQHKYANAVSEDDVVVDIDADYEPPKVHAPKPSTKFKCEHCDKVYHGKYTLRQHVKRDHDISLSDAFVCLECNAQLPRLRLLDEHVVKVHGGAPCVICNRRYKTRHELKRHQLKHTNERDVPCSHPGCEKRFFTTRHMRNHSKVHSEQKNFVCESCGYSCRNKETLRVHLRSHTGERPFGCKVCDKRFPSHSGLREHMAMHSTERPHVCKVCGATFSRQKGLYHHKFLHAATKQFVCKLCGNEYAQAAGLAGHMRKHRNDELNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00520112;
- 90% Identity
- iTF_00479666;
- 80% Identity
- iTF_00516473;