Basic Information

Insect: Drosophila gunungcola
Gene Symbol: -
Assembly: GCA_011057485.1
Location: WTSR01005077.1:899830-901687[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2 1.9e+02 2.7 0.4 3 23 229 250 228 250 0.92

2 9 4.2 3.9e+02 1.7 0.3 6 23 259 276 259 277 0.84

3 9 0.0012 0.11 12.9 1.2 1 23 282 304 282 304 0.99

4 9 0.0064 0.59 10.6 4.8 1 23 313 335 313 335 0.95

5 9 1.3e-05 0.0012 19.1 1.3 2 23 344 366 343 366 0.95

6 9 0.00034 0.032 14.6 0.0 3 23 374 394 373 394 0.96

7 9 0.00028 0.026 14.9 1.1 2 23 403 425 402 425 0.97

8 9 1.4e-07 1.3e-05 25.3 1.3 1 23 462 484 462 484 0.98

9 9 8.5e-06 0.00079 19.6 3.2 1 23 490 513 490 513 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2	1.9e+02	2.7	0.4	3	23	229	250	228	250	0.92
2	9	4.2	3.9e+02	1.7	0.3	6	23	259	276	259	277	0.84
3	9	0.0012	0.11	12.9	1.2	1	23	282	304	282	304	0.99
4	9	0.0064	0.59	10.6	4.8	1	23	313	335	313	335	0.95
5	9	1.3e-05	0.0012	19.1	1.3	2	23	344	366	343	366	0.95
6	9	0.00034	0.032	14.6	0.0	3	23	374	394	373	394	0.96
7	9	0.00028	0.026	14.9	1.1	2	23	403	425	402	425	0.97
8	9	1.4e-07	1.3e-05	25.3	1.3	1	23	462	484	462	484	0.98
9	9	8.5e-06	0.00079	19.6	3.2	1	23	490	513	490	513	0.98

Sequence Information

Coding Sequence: ATGACTTGTTTTCTGTGCACGCAGCGTTCGGAAAACGCAGATGGCAACATAGAGTTCGCATCGGAGGAAGCTAAAACTCTAGGTCTGCAATGCATCATAGAGTTGCACTTTTGGCTAAGGATTCATGANCCGGGCAGCCGGTATGTGTGCGGCGCCTGCtgggagcagctgctgctcttcCACAACTTCTACTTGAGCGTGAAGCAGGCCCATAAGGCGCTGGAGCAAACTGCTGCGGAGGAGACATCTCCGCCAGAATTGAATTCCCCTGGACAAATCGTAAAGAGCGAAAGAGTGGAGAGTGTAGCCGCTGCCGTGAAGCGTCGACGTGGTCGTCCCAGAAAAACCGAGGCCGCTGCTAAGAATGCCAGCGAGGAATTAAAGTCTGTGCTGGAGCAGATAAACCTGAACGAGATCAAAATCGAGTTCCCGGAGGCCGATCTTACCATTGCCGATGTGCTGGAGGATCAAGAGACTCCAGANGNNTTCGTAAGCGGGGACGGAGAGGAAGATGATCCAGAGGATTTGGAGGAGCTCCAGCCAAAGATTAAGCGAAACGGTCGCGGGCGCNCAAGGGGACGTGGTCGGGTGCGAATGGCGGAACGACCCCGGGCATCCGGTCTACCTAATATTCAGAAGTCACAGGAGTTCAACAACTATATCCAGGAGCATTACAAGGTCCTTTGCCACATCTGCAACTTGCCCATGGAGGGCTTTTCCCAGATGCTGGTGCATGTGCGGCGGGAACACAAGCAACGCGGCTACGCGATGTGCTGCAACCGCAAGTTCTGGAAGCGGGGcgtccttgtggaccacctGCGCCGCCACCAGGAACCCGAGCTATTCAAGTGTTCCATCTGCGCACGCGTCATGGGCCACCGACGAAGTTTGGAGCTGCACATGCGCATGCACGAGATCAAGACGCGCGGACGGCTCTACCAATGCGACCACTGCCCCAAGAGCTTCTACAGCTCCGTAGTTTGCGAGCGCCACAAGCTGACGCACATTCCGCGGGAGCAGYGGCAGGTGAAGTGCACTAACTGCGAGAAGACCTTCACCACCCAGTACTCAATGCAGCAGCATGTGAAGCTGGTCCATTTAAACTTATATGCCAAGATCTGTGATGTCTGTGGAAAGTCCATCCGAGGACGCGAAGCCTTGGCCCGCCACATGGAGGAGCACACGGGCACGCCGCAGGCAGCCATCAAGTGCCACCTCTGTGACTCCATGCTGACGACAAAGTACGGATTAGCCCGCCACATCAAAATGATGCACACTGCCGAGAACCTACAGCCCATGCAGTGCGAGCTCTGCCTTAAAATCTCGCCCAGCCTGCAGGCGCATCAGCACCACATCAAGTACACCCACAACACAGCTCGAAGTCATCAGTGTCCGATGTGTGAAAAGGCCTTCAAGCGGCCCAACGAGCTGAAGGAACACATGACCACCCACACGGGAGAGGTGCTGTATACATGCCCCCACTGCCCGCAGACCTTTAATTCGAATGCCAACATGCATGCCCACCGCAAGAAGGTGCACCGCAAGGAGTGGGAGGAGAACCGCCACCAGCGAATACATCGACCACGCAAATCCGACACCATCATAGCCGTGAGCGTACGCAAGACCACGGAGGCCAGGCAGGATGGTGGAGGGACAGGAGCTACAGATAGCCCTGGAGCAGAGTGCTAG
Protein Sequence: MTCFLCTQRSENADGNIEFASEEAKTLGLQCIIELHFWLRIHXPGSRYVCGACWEQLLLFHNFYLSVKQAHKALEQTAAEETSPPELNSPGQIVKSERVESVAAAVKRRRGRPRKTEAAAKNASEELKSVLEQINLNEIKIEFPEADLTIADVLEDQETPXXFVSGDGEEDDPEDLEELQPKIKRNGRGRXRGRGRVRMAERPRASGLPNIQKSQEFNNYIQEHYKVLCHICNLPMEGFSQMLVHVRREHKQRGYAMCCNRKFWKRGVLVDHLRRHQEPELFKCSICARVMGHRRSLELHMRMHEIKTRGRLYQCDHCPKSFYSSVVCERHKLTHIPREQXQVKCTNCEKTFTTQYSMQQHVKLVHLNLYAKICDVCGKSIRGREALARHMEEHTGTPQAAIKCHLCDSMLTTKYGLARHIKMMHTAENLQPMQCELCLKISPSLQAHQHHIKYTHNTARSHQCPMCEKAFKRPNELKEHMTTHTGEVLYTCPHCPQTFNSNANMHAHRKKVHRKEWEENRHQRIHRPRKSDTIIAVSVRKTTEARQDGGGTGATDSPGAEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00537029;
90% Identity: -
80% Identity: -