Basic Information

Gene Symbol
snpc-4
Assembly
GCA_011057485.1
Location
WTSR01005074.1:336863-339560[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.8 2.9e+03 -1.6 0.0 22 46 197 223 186 223 0.78
2 5 9.5e-11 9.7e-08 31.9 0.0 1 45 229 274 229 275 0.94
3 5 3.6e-06 0.0038 17.2 0.1 3 45 286 332 284 333 0.85
4 5 8e-05 0.082 12.9 0.0 2 46 340 385 339 385 0.87
5 5 9.1e-09 9.4e-06 25.5 0.0 3 43 393 434 391 437 0.95

Sequence Information

Coding Sequence
ATGTGCGATGTGGGGGATATGCGGCTgaaccagcagcagctgctggccgAGATCGCCGCCCTGCTTCAGACTACCGTGCAACCAAGTGATGCCAATGCACTGATGCTTAATCAGGAGATGCAGAGACGGCTCCTGCAAGTCCGTGCCCAAATCCTGGCCATTCTCCAAACAGTGCGTGCCCGCTTCGCCCGAAACGAGGAGATCCTGGTGCGCCGGCTAAGGCCACGCTCCCATTTCGGACAGGACTCCATCAACCTGAGCGGGGCCATCCTGCGGAAGGGTACGTTCCGCTTTAAAGGCAACCTTTTCTTCCGAGACATCGATGGCCGGAGCTGTCCCAACAACGAAGACTACGAGGCGCGTTGTCACACGGAAATGTTTCCCACCGACTTCGACATGCACTCTCGCCACGTATGGACATTGCTGGACAAGAAGAACGTGATCATGGGGATCAAACAACAGTTACTTGACCATATTGCTTTGAGGAACAGCACAACGCCCAGCGGCAGCCGGAAACGAAAACCAATCGAGAGGCACCTAAAGACTCTGGTCAGTCTGCTGGCCACTGCAGACGAGAGCTTCACAGTCGATTGGAACCAAATCAGCACCCTGGACGTGGAGTATCGTCACTCTCCGTATAGCTGTGAGACCATGTGGCGGGTCTACCTGCACCCTGATCTCAAGCGCGACGACTGGTCGGCGGAGGAGGACGAGATCCTGATGACGGCGGCCTCTGCGAACCGGATGCAAAACTGGGAGCTAATAGCCAAGTCATTAGACCGGCGATCCGACTACCAGTGCTTCATTCGCTTCCATACCGCCCTTCGTCATCTGCTTGATCCAAAGCCCACCTCCCGCTGGAGCGAAGAGGACAACGTTAAACTCCGGGAGTTGGCTGAGAGAAATACGGCAAATGGCGTAATTAATTGGAAGAAGGTTGTGGAGTACTTTCCAGGCCGGTCCAAGTCGACGTTGATTGGGCGTTACTACTACGTGCTGCACCCCAGAATCAGTCACGAAGCCTTCAGTACGAAAGAGGATATGATGCTGTTCGCCGCCGTGGAGGAGTACAATGGCAAGTTCCACTGCTTTCCACGTACCCTCTTCCCAAATCGATCTCTGACGCAGTTGCGTACTCGCTACCATAATGTCTTGGCCCAGCGCAACAAGACCGACTCCTGGTCGGTTCAGGACGACGCCCAGTTGATGAGCTTTGTCACCCAGCATGGGGCCTCCCAGTGGTTAAACTGCGCTACATTTCTAGGCAATCACTCCCGGACCAGCTGTCGAACACGTTTTCTGGTCATAAAAAAATTCCTAGAAAAGAACCCGAATGCAAAAGTAGAAGATTTGCCGCGACGACGATCGAAGAAGATGTCCGTAATTACTTCCGAAAACTGGGCGCAGCGTTTGCAGGAATGGCAAGAGGACCCGGAATCATTGGTTATAGCTGAGCAGATAAAAGGCTCATGGAAGGGAAGGCCCCCTTCTAAAAAGGCTAAAATCGATTCAAAGGCAGAAAATTCTTCCAAGTTGTCGAAAGTCGATATAGAGTTCTGCGAGTTCTTTAAGTACGGTTACAATCTGCCGCTGACACTTCCCACGATTTTTCCACTCCCGAAGGATGCTTACAATCTCGCCTATGTGGTCAGGGCCTTATCATATAAGCCACCGATACAAAGCTCGCTCTTACAGGACATCTCCATGCCAACTGAACTGCTCAAGTGTTACAATATAATGATAAGAAAACTGCCAGACGAGAAGTGTGATTTAAAGAGTCCACTTTTGCCGCCTAACTGGTCCACGATGATGGGGTTTCGGGCAATGTGCGTTCTGTCGGGAGATTGCCGCAAGCAGGGTCCGGCGGCCCACGTAACCGACTATGATGAATCTGCATCACCCATTCAGCTTTTCCGACAGCGGCTGCGAGCTCTCTTCTACCGCACAACTCTTCTCAGTCGCTTGGAATCGCATCTCTTTTCGGAACTGCCTGCTGCCTTGTTGGCGCTGCCACGACCCACGAtagatttcataaaaatggGTACGAATATTATCTTGACCGATACCGANNNNNNACCGGAACCAAAGAAAAATCTCAAATTGGAGCCTCTTAGCGAGGACGAGATAATAAGTACTGTAAAAGAGGAGATGGAGTTGGAGTACATAGTTCCATAa
Protein Sequence
MCDVGDMRLNQQQLLAEIAALLQTTVQPSDANALMLNQEMQRRLLQVRAQILAILQTVRARFARNEEILVRRLRPRSHFGQDSINLSGAILRKGTFRFKGNLFFRDIDGRSCPNNEDYEARCHTEMFPTDFDMHSRHVWTLLDKKNVIMGIKQQLLDHIALRNSTTPSGSRKRKPIERHLKTLVSLLATADESFTVDWNQISTLDVEYRHSPYSCETMWRVYLHPDLKRDDWSAEEDEILMTAASANRMQNWELIAKSLDRRSDYQCFIRFHTALRHLLDPKPTSRWSEEDNVKLRELAERNTANGVINWKKVVEYFPGRSKSTLIGRYYYVLHPRISHEAFSTKEDMMLFAAVEEYNGKFHCFPRTLFPNRSLTQLRTRYHNVLAQRNKTDSWSVQDDAQLMSFVTQHGASQWLNCATFLGNHSRTSCRTRFLVIKKFLEKNPNAKVEDLPRRRSKKMSVITSENWAQRLQEWQEDPESLVIAEQIKGSWKGRPPSKKAKIDSKAENSSKLSKVDIEFCEFFKYGYNLPLTLPTIFPLPKDAYNLAYVVRALSYKPPIQSSLLQDISMPTELLKCYNIMIRKLPDEKCDLKSPLLPPNWSTMMGFRAMCVLSGDCRKQGPAAHVTDYDESASPIQLFRQRLRALFYRTTLLSRLESHLFSELPAALLALPRPTIDFIKMGTNIILTDTXXXPEPKKNLKLEPLSEDEIISTVKEEMELEYIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00507541;
90% Identity
-
80% Identity
-