Basic Information

Gene Symbol
ct
Assembly
GCA_011057485.1
Location
WTSR01005018.1:931827-966942[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1e-26 8.3e-23 80.1 0.0 3 71 778 847 776 853 0.94
2 3 2.4e-31 2e-27 94.9 0.0 3 77 1264 1339 1262 1341 0.96
3 3 4.7e-30 3.8e-26 90.8 0.0 3 76 1458 1532 1456 1535 0.96

Sequence Information

Coding Sequence
atggcaatggaaatggaaatggaaatgCGCGCTACCCTGGCCGAGAAGGAAGTGAACACACTCAAAGAGCAGCTATCCACCGGCAATCCCGAGAGCAACGCCAACAGCGACAACAGcgacacagcagcagcagcggcagcaattGTTGCaggtgcaacagcaacacacgacagcgaggaggagcagcagcatcNNNNNNNNNNGCAGCAGCAGCAGNNNGTGGAAAGCGACAGCGACAAGCTGCTGAACAGCTCCATTGTTGCAGCGGCCATAacgctgcagcagcagaacgGCAGCAATCTGCTGGCGAATACAAACACACCGTCGCCCTCGCCGCCGTTGCTCAGcgccgagcagcagcagcaTCACCAGGNCGAGGAGGAACTGGACGAAGNggaggaggacgacgaggaggaggatgaggacgaggacgatgaGGAGGAGAATGCCTCGGTGCAGTCGAATGCTGATGATATGGAGCTGGATGCACCGCAAGAAACCAGAACTGAGCCAAGTGCAACagcccaacagcagcagcagcagcagcagcagcagcaggatgcAGATCTTGAGGAGCCCAAGGATGCGGAGGAGGCTAGTTTAAATGTTAGCAATAATCACACAACCGATAGCAATAATAGTTGTAGTCGAAAGAACAACAATGGCGGCAATGAAAGTGAGCAACATGTGGCCAATTCGGCTGAGGACGATGATTGCGCCAACAACAATACGAAcaccagcaataacaacaacaccaccagcaacacagccaccagcaacaccaacaacaataataacaacaacaacaataacaacaacaacaacaacagcagcagcggcaacagcgagaagcgcaagaagaagaacaataacaacaacaatggccagCCTGCTGTTTTATTAGCTGCCAAAGATAAAGAGATTAAAGCACTTCTGGACGAACTGCAGCGTTTGAGGGCGCTGGAGCAGACGCACTTGGTGCAAATCCAGCGACTGGAGGAGCACCTGGAGGTCAAGCGCCAGCACATAATGCGATTGGAGGCGCGTCTGGACAAGCAGCAGATCAACGAGGCGCTGGCCGAGGCCACCGCTTTGGCGGCCGCTGCTGCNNNNANNNNNNNNNNNNNNNACAGCCAgagcagcgacaacaacaagaagcTGAGNACGGNNNccaccacaaccaccaccacNNNNNNNNNNNNNNCCACACCGCTGGAAGCCTCATCCTCCATCCTTGGCGATCTGCCAGAGGCAGCAAAAGCCACCGTTCCGGcggaggatgaggacgaggatgaAGATCNGGANcaggatcaggatcaggccATGCTGGTGGACTccgaggaggcggaggacaAGCCAGAGGAGCCGCTCCACCACGACGACGATGACNNNNNNNNNNAGGAGGCCGAGGATCGGGAGGCAGTCAATGCCACCACAACCGATAGCAGCGAgctcaaaatcaaaaaggaaCAGCACAGTCCGCTGGATCTGAATGTGCTCAGTCCACAATCGGCCATCGCCGCTGCAGCTgcggccgccgctgccgccgcctgcGCCAACGACCCCAACAAATTCCAGGCGCTGCTCATCGAGCGGACCAAAGCTCTGGCCGCCGAGGCGCTCAAGAATGGCGCCAGTGATGCCATCAGCGAAGAAATCAACAACCGAAACGAAGATGCCGATGATGATGCAGNANNNGAAGTNNNNNNNNNNNNNNNNNNNNNNNNaactgcaactgcaacactCGCAatagcaacatcagcaacatcatcaaGTGAATTGCTGCCAAACGAAACGGAAGCCAAAGCTGACAATAATATGGCGCCCAAGCAGGAAATCGaagacgatgacgacgacgaggtCACCAGCAATCAGGTGATCCTGCCGGAGCAGCTGGTCAACGATTATTGGCCCGCTGGCAACAATCCGAGCAACAATGGCTCGTCGAACAGCAGCAATGCGACGGCCAGCAGCGCGGCCACCGCCCAACTGGCCGCCAGTTTGGCCAGCACGCTGAATGGCAGCAAATCGCTGCTGCAGGAGGACAGCAATGGactggccgccgccgccatgGCCGCTCATGCCCAGCATGCGGCCGCATTGGGACCGGGATTTTTGCCCGGACTGCCGGCCTTCCAGTTTGCCGCCGCCCAAGTGGCCGCCGGAGCAGCCGATGGACGGGGTCACTATCGTTTCGCCGATTCGGAATTGCAATTGCCACCGGGCGCATCGATGGCGGGGCGACTCGGTGAGTCGCTCATCCCCAAGGGAGATCCCATGGAGGCCAAGCTGCAGGAAATGCTGCGCTACAACATGGACAAGTATGCCAATCAGGCGCTGGACACCCTGCACATCTCGCGACGCGTCCGGGAGCTCCTATCGGTGCACAACATTGGCCAGCGGCTGTTCGCCAAGTACATACTGGGCCTCTCACAGGGAACCGTCTCCGAGCTGCTCAGCAAGCCCAAGCCCTGGGACAAGCTGACCGAGAAGGGACGCGACAGCTATCGCAAGATGCACGCCTGGGCCTGTGACGACNACGCTGTCATGCTGCTCAAATCGCTGATACCCAAGAAAGACTCTGGATTGCCGCAGTACGCGGGTCGTGGNGCCGGCGGCGCTGGCGGCGATGACTCCATGTCCGAGGATCGCATTGCCCACATCCTCAGCGAGGCCTCCTCGCTGATGAAGCAGAGCAGCGTGGTCCATCAGCACCGCGATCGGNNGCNNNNNNNNNATCGGGAGCAGGAGCGTCGCAGCCACGAGGACTCGCACAGCAACGAGGACAGCAAGTCGCCGCCGCAGAGCTGCACCTCGCCGTTCTTCAaggtggagcagcagctgaagcagcaccagcagcacctCAATCCCGACcaggccgccgccgcccagcaGCGGGAGCGGGAGCNNNNNNNNNNNNAGCGGGAAAGGGAGCGGGAGGTGCAGCAGCGACTGCGGCACGAGGATCTGGCCCAGGACAAGATGGCCCGGCTCTACCAGGAGCTGATCGCACGCACGCCCAGGGAGACGGCCTTTCCAAGCTTTCTCTTCTCGCCGTCGCTGTTTGGAGGAGCCGCTGGCCTGCCGGGAGCAGCTGGCAGCGCCTTTCCCGCCATGGCCGACGAGAACATGCGTCACGTCTTCGAGCGCGAGATTGCCAAGCTGCAGCAGNNNcaccagcagcagcagcaacagcaacagcaNNNNNNNNNNNNNGCGGCACAGGCCGCATTTCNNAACTTCTCCAGCCTGATggcgctgcagcagcaggtgctGAACGGGGCCCAGGATCTCTCGCTggcggccgccgccgccaagGACATCAAGCTGAACGGACAGCGCTCCTCGCTGGAGCACAGtgccggcagcagcagcagctgctccaagGATGGCGAACGTGACGAGCCGTATCCCAGTTCGCTTCATGGCCGCAAATCCGAGGGCGGCGGCACTCCCGCCCCACCAGTGCCGCCCTCATCGGGTTCAGCGGGASCAGNNNGAGCGGGAGCWGGAGCWGGAGCAGGCGTGCCAGTGACANCCACCAGCNNNNNNNNNNGTGGTGGTGGAGCCAGCTCGGCGGCACCCAGTCCGCTGAGCAACTCCATACTGCCGCCGGCGCTGAGCAGCCAAGGGGAGGAGTTCGCGGCCACGGCCAGTCCGCTGCAGCGGATGGCCTCCATCACGAACTCGCTGATCACACAGCCGCCGGTGACGCCGCACCACAGCACACCGCAGCGGCCCACCAAGGCGGTGCTGCCGCCCATCACGCAACAGCAGTTCGACATGTTCAACAACCTGAACACCGAGGACATTGTGCGTCGCGTAAAGGAGGCCCTCTCCCAGTACTCCATATCGCAGCGATTGTTTGGCGAATCCGTGCTCGGGCTGTCGCAGGGCTCCGTCTCCGATTTGCTGGNNNGGCCCAAGCCGTGGCACATGCTGACGCAGAAGGGGCGCGAGCCGTTCATCCGCATGAAGATGTTCCTGGAGGACGAGAATGCGGTGCACAAGCTGGTGGCCAGCCAGTATAAGATTGCACCCNAGAAGCTGATGCGYACGGGCAGCTACAGTGGCAGTCCGCAGATGCCGCAGGGATTGGCCAGCAAGATGCAGGCCGCCTCGCTGCCCATGCAGAAGATGATGAGCGAGCTGAAGCTGCAGGAGCCGGCGCAGGCGCAGCATCTCATGCAGCAGATGCAGGCGGCGGCCATTTTGCCACCGTCGGCGGGACAGGTGGGGGCGCCCGGCAATCCGGTGAGTGGCGCGGGCGGCGAGAAGAAACCAATGCTGATGCCCGTGCACGGCAGCAATGCGATGCGCAGCCTGCACCAGCACATGTCGCCCACCGTCTACGAGATGGCCGCCCTCACCCAGGACCTGGACACGCACGACATCACCACCAAGATCAAGGAGGCCCTGCTGGCCAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTCGGCCTGTCGCAGGGCTCCGTATCGGAGCTGTTGAGCAAACCGAAGCCCTGGCACATGCTGTCCATCAANNGGCGGGAGCCCTTCATACGCATGCAGCTGTGGCTGAGCGATGCCAACAATGTGGAgcggctgcagctgctcaAGAATGAGCGNNGGGAGGCCAGCAAGCGGCGGAGGAGCACGGGACCGAATCAGCAGGACAATAGCAGCGACACCTCCAGCAATGACACCAACGACTTCTACACCAGCAGTCCGGGTCCCGGTTCGGTGGGTTCGGGCGTGGGCGGGGCACCGCCCAGCAAAAAGCAACGGGTGCTCTTCTCCGAGGAGCAAAAGGAGGCACTGCGGCTGGCCTTTGCCTNGGATCCGTATCCCAATGTGGGCACCATTGAGTTNCTGGCCAACGAATTGGGCCNGGCNACGNGCACCANYACCAATTGGTTCCACAATCATCGCATGCGCTTGAAGCAGCAGGTGCCCCATGGACCCGCCGGCCAGGACAATCCGATACCCAGTCGCGAGAGCACCAGTGCCACACCCTTCGATCCCGTCCAGttccgcctgctgctgcagcagcgccTGGTCGAGCTGCACAAGGAGCGCATGGGACTGGGCGGGGCGCCCATTCCCTATCCGCCGTActttgccgccgccgccctgcTGGGTCGCAGTCTGGCGGGGATTCCCggcgccgctgccgctgcggGAGCGGCTGCCGCGGCCGCTGCCGTTGGTGCCGCCGGCGGTGATGAGCTGCAGGCCCTCAATCAGGCCTTCAAGGAGCAGATGAGCGGTCTGGACTTGTCGATGCCCACACTGAAGCGGGAACGCAGCGACGATTACCAGGAcgaactggaactggaggGCAGTGGTGTCGGCGGCATTGGCGGCATTGGCGGCGGTGCCGGCAGCGGTCATGCCCTCAGCGACAACGAATCGCTGGAAGGCGGACAGGAGGAGGACAAAACGGCGGCCAGCGATTACGAGAAGGCGCTGCACAAGTCCGCtttggccgccgccgctgcctaCATGTCCAATGCGGTGCGCAGCTCCCGTCGCAAACCAGCCGCCCCCCAGTGGGTGAATCCCGCCGGTGCGGTCACCAATCCCAGTGCCGTTGTGGCGGccgtggcagcagcagccgctgcagccgccgccgctgcNNNNGACAGCGAGCGGATCATCAAYGGGGTGTGCGTAATGCAGGCCTCGGAATATGGACGCGATGAACAGGACAAGCCATCCGCGGATGGGGGCAACGATTCCGATCAAGAGCATGCCCAGCTGGAGATCGATCAGCGCTTCATGGAGCCGGAGGNGCACATCAAGCAGNaggaggacgacgacgaggtgGCCAGTCTGGCCCATCTGGTCGACGGCAGCGAGGACTCCGCGGCCAGCGATCACAAGCTCAAGGTGGTCAACGAGGAGAAGCTGCGCATGGTGCGCGTTCGGCGGCTGAGCAGCACCGGTGGTGGCTCCTCGGAGGAGATGCCCGCACCGCTggcaccgccgccgccaccagCANNNCCATCCAGTGGGGCAGAGggcaccaccgccaccgccaccagcagcagcaRcagcagcagcaacaCCGGTTGGAATTACTAG
Protein Sequence
MAMEMEMEMRATLAEKEVNTLKEQLSTGNPESNANSDNSDTAAAAAAIVAGATATHDSEEEQQHXXXXQQQQXVESDSDKLLNSSIVAAAITLQQQNGSNLLANTNTPSPSPPLLSAEQQQHHQXEEELDEXEEDDEEEDEDEDDEEENASVQSNADDMELDAPQETRTEPSATAQQQQQQQQQQQDADLEEPKDAEEASLNVSNNHTTDSNNSCSRKNNNGGNESEQHVANSAEDDDCANNNTNTSNNNNTTSNTATSNTNNNNNNNNNNNNNNNSSSGNSEKRKKKNNNNNNGQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAAAXXXXXXXSQSSDNNKKLXTXXTTTTTTXXXXXTPLEASSSILGDLPEAAKATVPAEDEDEDEDXXQDQDQAMLVDSEEAEDKPEEPLHHDDDDXXXXEAEDREAVNATTTDSSELKIKKEQHSPLDLNVLSPQSAIAAAAAAAAAAACANDPNKFQALLIERTKALAAEALKNGASDAISEEINNRNEDADDDAXXEVXXXXXXXXTATATLAIATSATSSSELLPNETEAKADNNMAPKQEIEDDDDDEVTSNQVILPEQLVNDYWPAGNNPSNNGSSNSSNATASSAATAQLAASLASTLNGSKSLLQEDSNGLAAAAMAAHAQHAAALGPGFLPGLPAFQFAAAQVAAGAADGRGHYRFADSELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDXAVMLLKSLIPKKDSGLPQYAGRGAGGAGGDDSMSEDRIAHILSEASSLMKQSSVVHQHRDRXXXXXREQERRSHEDSHSNEDSKSPPQSCTSPFFKVEQQLKQHQQHLNPDQAAAAQQREREXXXXXREREREVQQRLRHEDLAQDKMARLYQELIARTPRETAFPSFLFSPSLFGGAAGLPGAAGSAFPAMADENMRHVFEREIAKLQQXHQQQQQQQQXXXXXAAQAAFXNFSSLMALQQQVLNGAQDLSLAAAAAKDIKLNGQRSSLEHSAGSSSSCSKDGERDEPYPSSLHGRKSEGGGTPAPPVPPSSGSAGXXXAGAGAGAGVPVTXTSXXXXGGGASSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLXXPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPXKLMRTGSYSGSPQMPQGLASKMQAASLPMQKMMSELKLQEPAQAQHLMQQMQAAAILPPSAGQVGAPGNPVSGAGGEKKPMLMPVHGSNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIXXREPFIRMQLWLSDANNVERLQLLKNERXEASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFAXDPYPNVGTIEXLANELGXATXTXTNWFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRLLLQQRLVELHKERMGLGGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELEGSGVGGIGGIGGGAGSGHALSDNESLEGGQEEDKTAASDYEKALHKSALAAAAAYMSNAVRSSRRKPAAPQWVNPAGAVTNPSAVVAAVAAAAAAAAAAAXDSERIINGVCVMQASEYGRDEQDKPSADGGNDSDQEHAQLEIDQRFMEPEXHIKQXEDDDEVASLAHLVDGSEDSAASDHKLKVVNEEKLRMVRVRRLSSTGGGSSEEMPAPLAPPPPPAXPSSGAEGTTATATSSSXSSSNTGWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00515496;
90% Identity
iTF_00515496;
80% Identity
iTF_00515496;