Basic Information

Insect: Drosophila guanche
Gene Symbol: ci
Assembly: GCA_900245975.1
Location: NW:1192013-1200078[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0018 0.11 12.6 0.3 3 23 461 484 459 484 0.92

2 5 0.14 8.4 6.6 0.2 6 23 499 519 492 519 0.79

3 5 0.0011 0.068 13.2 3.6 1 23 525 549 525 549 0.97

4 5 0.00026 0.015 15.3 0.4 1 23 555 580 555 580 0.97

5 5 6e-06 0.00035 20.4 0.3 1 23 586 611 586 611 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0018	0.11	12.6	0.3	3	23	461	484	459	484	0.92
2	5	0.14	8.4	6.6	0.2	6	23	499	519	492	519	0.79
3	5	0.0011	0.068	13.2	3.6	1	23	525	549	525	549	0.97
4	5	0.00026	0.015	15.3	0.4	1	23	555	580	555	580	0.97
5	5	6e-06	0.00035	20.4	0.3	1	23	586	611	586	611	0.97

Sequence Information

Coding Sequence: ATGGACGCGTACGCTTTGCCAACGTATTTTCCCCTTGCATACTCGGAACTACAATTCCTAGCATCTAGGCGAGCTGCAGCTGTAGCAGCGGCGGCATCTGTGTTACCGGGTTCGCCATGCCTTAACCACGTTCCGATATCAGATGTTAGTAGCTCCGTGACAATTCCTACCCTGATGACCGGAAATGAAGCAGCGGTAAAAGCTCCTGCTTCTATTCACACACCAATTAATACTGGAAATGCATTATTGGCCAACTCAGcggggcatcatcatcatcaccatcatcaacaTGTTCATGGTATAAATGTAGGTGGGCAAGCTCAACCGCACGATTTTCACCCTGCATACAGAATTCCCGGATACATGGAACAATTTTACTCTCTGCAACGTAGCAGCCCCACTGCATCCTACCATGATCCCTATGCTAACTGTGCCTCAGCATTTCACTTGGCCGGGCTTGGATTAGGATCAGGAGACTTCTTGGGTTCGAGAAGTATGGGTTCTCTGGGAGAATTGCATCAtgcagctgttgcagcagccgccgctgcaggATCACTGGCAAGTACAGACTTTCACTTTAGTATCGATGGTAACGGACGACTTAATAGCCCGCGGCCGGCTGGCGGCAGTATTCGTGGAAGCGTTAGCCGCAAGCGAGCGCTATCTTCATCGCCATATTCGGATTCATTTGATATTAATTCAATGATCAGATTTTCACCAAATTCACTAGCCACGATTATGAATGGTTCGAGGGCAAGCAGCGCTGCTAGCGGTTCATATGGTCATATTGCCGCTAGTGCATTGAGTCCAATGACGCACGCCAACGCATCAATTGCCCCACGTCTACAGCAAATACAAGCACATTTGTTGCGTGCAAGTGCTGGACTTCTGCACCCCTTGACTCCGCAACACGCGGCTGCTGCCAGTTTTTCCATGACCCATGCAGCCAACGCTGCTGCTCTAGGCCTAGGGGATGTCCATTCCAAACCAAAAGACTTACACTTACCCATTCTTGCGTCGAAATCTCCGATACCGAGGCCAGTTTCAAATGACTCAAATGAGGTTGGTACTTCAAAGAACTAcgaagaaggaaaacaaaatgccCGACacctaaaaaacaagcttaTGGAGCAGCCATCGTCCACATCTGACAGAGTAGCACAAGTAGAAGCTGATAGCGCGTCTTCGAATTTATCGGAGCGTCGACCACGTAATAAAGACTCAGACAGAACTGGTAATGCCAATGGAGTTGGACAGAGTAGCCACGTGGAGGAATTTGTCCACTTTGGCTCTGTATCGACACCATCGAATGAATATGACTGTACCAATGCCGACACAACAGATATTAAGGACGAGCCCGGTGACTTTATTGAAACGAATTGCCATTGGAGTAGCTGTGGTATTGAGTTTGTGACCCAAGATGAACTTGTTAAGCATATAAATAATGACCATAttcaaaccaacaaaaaagcttTCGTGTGTCGGTGGGAGAATTGTTCACGTGGCGAAAAGCCATTTAAGGCTCAGTATATGCTGGTTGTACACATGCGTCGGCATACCGGAGAAAAACCACATAAGTGCACGTTTGAAAGCTGTTACAAAGCATACTCCCGTCTGGAGAACCTAAAAACTCATTTGCGTTCGCACACTGGAGAAAAGCCCTATACCTGCGAGTACCCAGGATGCAGCAAAGCCTTCAGTAATGCCAGTGATCGTGCGAAGCATCAAAACCGAACTCACAGTAATGAGaaacCATACGTTTGTAAAGCACCTGGTTGTACTAAACGTTATACCGATCCAAGTTCGTTGCGAAAACACGTAAAAACCGTTCATGGTGCTGAGTTCTATGCTAACAAGAAACACAAAGGCTTGCCTTTAAATGATGCAAACTCTCAACTGGAGAGGGACAATGGCCAGAATCGACAGCATTTACAGGAGCAGCATATTGACTCAAGCCCTTGCAGCGATGACCTGCATATTGGAAAAATGATGGGCATGTACAGTCCCAGTATTAAATCTGAATCAGATGCCAATTCTCCACATAATTTAATGACAACTGGTGGAGGCGCCTCAGCTTCCGATTGCTTCATATCATTCACGCCAGACGATACTGTCGAAAACGGTGCATTAAACGAGTGCTGGAACTGTGACGATGACGTCGATGTGGCCGACCTACCTGTGGTCTTGCGTGCAATGGTAAatattggaaatggaaataccTCTGCCTCATCTATGGGGGCAACTTCTATGGGTCGTCAGCGCTTTCGCAGTCGACTTCAAACTAAAGGCATAAACTCCAATTCGATGCTTTCTAATATTCCGGAAAGTAATCGAGCCATTGGAATTACCGAACTTAATAAACGTATCACAGAACTAAAGATGGAACCAGGTATGCCGACGGCTCAGGTTCAAGCTCGAGGGCCTGCTAATACAGGCTTAGGTGGCTTGCAGGAGGAGTTATCGCAAAGTCAATCACAGAATCGCAACATTGCTTTAACTAAGCAGGGCTATGCAGCAGTACATAGTTCTCTACAAGCTCAGTTTCGACGAGACAGCCAGAACTCCAATGCCAGCACATATTACGGCAGCATGCAAAGTCGTCGTAGTAGTCAATCATCGCAGTTATCGTCCATGTCAACTATGCGACCGAACCCTTCCTATAATACGACCTCTGCTTCTCTTTACGACCCAATTTCGCCAGGCTGCTCTCGCCGCTCCagccaaatgtcaaatgttGCAAGCGGCTATGGCCTGACACCAACAACAGGATCGAGTTCCACAGAAAAATttgcaaatacaaattgtgGCGCTAGTGCACAAATAAATGATAATCCTGGCAATCAATATTTCGCTCATAACAGTCTTCCGCCACCTCCGTCGTCACATTTAAGTGCAACTAATCTAAAGCGCTTGCAGGGTACAAATGGTATTGGCAGCTATCAGCAGGAAAAGCCTTTTCAAAATAGTGGGCGTTATTCAACTCCCAATATTATTCAGTCTCCGCATTCTGGGAATTACCGACATGAAACAGGGCTACAATTCGGTAAATCGGTGCAGAATTGTGTATCTAGGCGACAGTCCGAGCCATTATTGCCGAACATTAGCTTAGAGCTTGATGTTACTTTGAATGACTCAAATATGCGTAGCTTCAATAGCAGGTATAGAACCTGCACTGGCGACACGCATCGCAACGATTTCAGAACCGGACAAGATACCGGAAAAATTCAGGATGGTTCCAATGCCTCAGTGTTGACTGGGAACATGCTTAAGGCACCTGAGCAACATCCAAATGAAAGGGTGAATTTGGATGAAGTTGAAGAACTTATATTACCAGATGAGATGCTACAGTATCTAAATTTGGTCAAAGATGATGATAAGCTGTTGTCTGGCAAGGAACATGAAAATAGAGATATCTCAACTGGCGTATCAAAAATCTCGTCAGCTAATGATAATCAGGATCGTCCGCCTGGAAATGTATCAAGTCAGCAGCTGGCGGCACCTGACTCGAACCTAGACATATCAGCAGTAGCGGCGCACCAAGCTGGACGTGCCTTCGAAATATTGTACGCACAAAGAGATCAGATGATCGCATCTGAACTCCGTCGTCCCACACAGACGGTCTGCAATAATTTTTTGCAGAGACTTGATAATGGCCAATTCTCCCAACTCCCATCACTGTGTTTTGAGCAACAAGCAATAACAGCAACCCAGAATCAAATTATTGATTCATCAATGACGAGTTTGCCAGAGCTCACGGATATTTCTACAAATACGCAATTAGCTTCAGATGATATAAGCTTATTGAATAGTGAACATCAAAACAATAACGGAAATGAGATTCAATGCGGAGTTATAAGCCAGTCACAAATGTCACCATCTACCAACACAAATGTTACTGGCCAAGTGCCGACCATAAGGTCACAAACGCATAGCCCAAGTAAATTCCCAATAAAGCCTTCGTTGAAAAATGTTCAGCTTACGTGTGTCCCTGCGATAAGCCCAAAAATTGGAACTGATAACCAACCAATTAATATAACTTCAATGCATCTAGAGACTTACCAACGTACCCTGGAATATGTTCAAAGTTGTCAAAACTGGATGCAGACAAACAACGCCGTTGCGGGTCATGTAAATGTTGCAGCAACCACCTCTACCACTAATATGCAAGTTTCTAGCAACAACCCAGTGTGGCCGGACGTAAGCAGCTCGACTCACCCCCAAGCAGGAACAAATATGGTTATAAACGATATGACTACATCACTGAGCTCACTTTTAGAGGAGAATCGATATCTGCAGATGATGCAGTAG
Protein Sequence: MDAYALPTYFPLAYSELQFLASRRAAAVAAAASVLPGSPCLNHVPISDVSSSVTIPTLMTGNEAAVKAPASIHTPINTGNALLANSAGHHHHHHHQHVHGINVGGQAQPHDFHPAYRIPGYMEQFYSLQRSSPTASYHDPYANCASAFHLAGLGLGSGDFLGSRSMGSLGELHHAAVAAAAAAGSLASTDFHFSIDGNGRLNSPRPAGGSIRGSVSRKRALSSSPYSDSFDINSMIRFSPNSLATIMNGSRASSAASGSYGHIAASALSPMTHANASIAPRLQQIQAHLLRASAGLLHPLTPQHAAAASFSMTHAANAAALGLGDVHSKPKDLHLPILASKSPIPRPVSNDSNEVGTSKNYEEGKQNARHLKNKLMEQPSSTSDRVAQVEADSASSNLSERRPRNKDSDRTGNANGVGQSSHVEEFVHFGSVSTPSNEYDCTNADTTDIKDEPGDFIETNCHWSSCGIEFVTQDELVKHINNDHIQTNKKAFVCRWENCSRGEKPFKAQYMLVVHMRRHTGEKPHKCTFESCYKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLNDANSQLERDNGQNRQHLQEQHIDSSPCSDDLHIGKMMGMYSPSIKSESDANSPHNLMTTGGGASASDCFISFTPDDTVENGALNECWNCDDDVDVADLPVVLRAMVNIGNGNTSASSMGATSMGRQRFRSRLQTKGINSNSMLSNIPESNRAIGITELNKRITELKMEPGMPTAQVQARGPANTGLGGLQEELSQSQSQNRNIALTKQGYAAVHSSLQAQFRRDSQNSNASTYYGSMQSRRSSQSSQLSSMSTMRPNPSYNTTSASLYDPISPGCSRRSSQMSNVASGYGLTPTTGSSSTEKFANTNCGASAQINDNPGNQYFAHNSLPPPPSSHLSATNLKRLQGTNGIGSYQQEKPFQNSGRYSTPNIIQSPHSGNYRHETGLQFGKSVQNCVSRRQSEPLLPNISLELDVTLNDSNMRSFNSRYRTCTGDTHRNDFRTGQDTGKIQDGSNASVLTGNMLKAPEQHPNERVNLDEVEELILPDEMLQYLNLVKDDDKLLSGKEHENRDISTGVSKISSANDNQDRPPGNVSSQQLAAPDSNLDISAVAAHQAGRAFEILYAQRDQMIASELRRPTQTVCNNFLQRLDNGQFSQLPSLCFEQQAITATQNQIIDSSMTSLPELTDISTNTQLASDDISLLNSEHQNNNGNEIQCGVISQSQMSPSTNTNVTGQVPTIRSQTHSPSKFPIKPSLKNVQLTCVPAISPKIGTDNQPINITSMHLETYQRTLEYVQSCQNWMQTNNAVAGHVNVAATTSTTNMQVSSNNPVWPDVSSSTHPQAGTNMVINDMTTSLSSLLEENRYLQMMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00564221;
90% Identity: iTF_00601328;
80% Identity: -