Dgua000020.1
Basic Information
- Insect
- Drosophila guanche
- Gene Symbol
- -
- Assembly
- GCA_900245975.1
- Location
- NW:558311-565113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8 2.8e+02 1.8 0.9 2 23 127 149 126 149 0.92 2 13 0.0044 0.26 11.4 4.3 2 23 176 198 175 198 0.95 3 13 8.3e-06 0.00049 20.0 3.2 2 23 205 227 204 227 0.96 4 13 0.0096 0.57 10.3 9.1 2 23 476 497 476 497 0.97 5 13 1.1e-06 6.4e-05 22.7 1.2 1 23 503 526 503 526 0.96 6 13 0.0032 0.19 11.8 0.3 1 23 531 554 531 554 0.93 7 13 5.4e-05 0.0032 17.4 5.5 1 23 572 594 572 594 0.96 8 13 0.00092 0.054 13.5 1.1 1 23 599 621 599 621 0.97 9 13 2.9e-05 0.0017 18.3 1.7 1 23 627 649 627 649 0.95 10 13 2e-05 0.0012 18.7 0.7 1 23 655 677 655 677 0.98 11 13 3e-07 1.7e-05 24.5 2.7 3 23 685 705 684 705 0.99 12 13 5.6e-08 3.3e-06 26.8 0.8 1 23 711 733 711 733 0.98 13 13 0.33 19 5.5 3.4 1 19 738 756 738 761 0.89
Sequence Information
- Coding Sequence
- ATGGCCGCCACAGGCTCAGCCCAACCAGTGCCGGCGGGCGGCAGCTTCGATTTCGATGCTGCGATTGTCTGCCGCATTTGCCTGCGCAGTGTGACGGCAGTGGGCGAGGAGATGCACTTCATCTACGACGAGGCGCCTGTGGAGCAGGGAGCCAATCTCGCCCAGATACTAAACGAGTGCACGCGCTACACCTGCGACCGATTCGACGACAAGATGCCACATAAAATGTGCGAGCTGTGCACCAAGGCGGCCCGCCACGCCTACCGTTTCAAGCGGGACGCGGAAAAGTCCTACTGCTCCCTGATGGCCTTGCTGGGACGTACGCTCAACAGCAGTAGGTCCGATGTGTGCACCCAAACGGAGCAGGTGGCCCTCCTGCCCTGCGAGATGTGCCATGACCAGTTTCTGAACAGCCTGGAGTTGCGGCTGCATCGGAATAGGGTGCACAAAGCAAGGGACAGTGGCAGTAGCACTGGCACCGGACCTAATGCTACTGCCAATGAAGGAGTGGTGGTGCAGCAGCTCAAGTGCAAGTTCTGTCCACAGCATTTCCCGCATCTTCGACAGCTTCGTACGCATCTGGCACGGAGTCACAGCCAAGCGGAACGTCTACAGTGTCCCCACTGCCAGACAGCCTTCACCCGCAGGGATCACATGCTTCGCCACATACGCAACATACACAAAAAGGAGGCAGACAGCACCTGGCCGCCGCTGGAGGACGAGGCAACTATACAGAGCTGTACCGGGGATGAGCTGGTGTCGGCCGAGGTGCTGCTGAACGAGGACGAGAATGACGAGGGCGATGCCTATCAGTGCAATATCAATCCCATATCCagcaacgaggaggaggacgagctCAATGACGAGGAGGCCAAAAAGGAGCTGTGGCTGCACATCAAGCCGGAGCCCTGCTTGGAGGCCGAGGATCTCGATCTGAAGGTCGAGAAGAAGCTGCGCCGGCGCAAAGGGAAGACTGAAACCGAGGAGGAGCGGCGTACCACCAGCGAGGCCGCCGCTGTCAAGGATGAACCTATGCCCAGCGCAGACACCGCCGTTCAGGCGACGCTGCACATCAAAGAGGAAAGCCAGCCGGCAGCTGGCTGCGTGAATGatgatgagaatgagaatgaagGACGCGAGGAAGATGACGTCATGAATGATTCGAGGCGCCCCGAGGTGCCGCTGGAGCTGCCTCTCAGTGATGAAgatggggaggaggaggactacGAGTAtggggatgaggatgaggagagcGACCTGGAGGACGACGACCACGATGAGGATGATGGAGAAGAGATGGATGACGTGCCCCCGGAAGGCGTAAATAGATCCAATTTGGAGATCGTGAGGGATTACCTGAGGAAAGGAAAGCCCCTGAAACGAAGGCGTCGCAACAAACAGAGCGGAGAAGCGAATCCAGAGAATCGCTGCGATGTCTGCCAGCGGACATTCTCGCGCCATTGCCACCTGCTGCGGCACAAGCTCTCACATCTGGAGAAGAAGCCGCACAGCTGCCCGCAGTGCCCCAAGGCGTTTGCGCGCAGCGACCACCTCAAGGCCCATGTCCAGAGCTTGCACAGCAACAAGGAGCACAAGTGCACGCTGTGCGAGGCCGCCTTTGCCCGGCCCGAGGCCCTCGACCGGCACAAGGTGAGCAAGCACAACGGCGAGGGCCTGGTGGCGGGCAGCAAACTGAATCTCCAGCTGGCAGAGCACACCTGCGAGTACTGCTCGAAGCGTTTCTCCAGCAAGACGTACCTGCGCAAGCACACGCTGTTGCACACCGACTTTCTGTACGCCTGCAAGAGCTGCGAGGAGACCTTTAAGGAGCGCCAGCAGCTGCGCGAGCATGAAAAGAGCCACACCGGGCAGCGAAACTTCCTGTGCTGCATCTGCGGCGACAGCTTTGCCCGCAATGACTATCTGCGTGTGCACATGCGGCGGCATAACGGCGAGAAGCCGTACAAGTGCCGCTACTGTGTGAAGGCCTTTCCCCGCGCCACCGATCTCAAGGTGCACGAGCGGTATCACACGGGCACCAAGCCCAATCTGTGCAATACGTGCGGCAAGAGCTTCCATCGGGCCTACAATTTAACCATCCACATGCGAACACACACGGGCGAGCGGCCGTACATGTGCGACCAGTGCCCGAAGAGCTTCACCCAGAGCAATGATCTGAAGGCGCACATACGTCGGCATACGGGCGAGCGATACAAGTGTCCGCACTGCGATGCCTACTTCCTGCAGCTGTACAATATGCGCAACCATTGCCTGAGTGCCCACAACAAGCATATCGAGACGAAGACGGGTCGCCTGCAGCGTACAGGACTCCTCGAGGATGCCACTCAATCCCACCTGACCACTGTCGTGATGCCCCCCGTTCGCTATcagtcttcgtcgtcgtcgtctgggCCGGATCCCaatcagcagctggagcaacaAATGGGTGGGCCGGTGGCTGCAATGGGTACGGGAATCGAGAGCTCGTCCGCCACCATAATTCATCATCATTCTCCGCCGGAGGCTGCCTCAGCGTACAATGTCTCGCCTATGACAACGGGGGCTGGGCCCACAACATTAGCAACGTCTGCGGCGGAGGCGGTGACCACTATCGATGGTGTCGCCTATGCACCCGCCCCAGCACCGCCAACGCCAACTCCTGTGAATGCAGCACCATTCGGTGCCTTCAATTTTCCACCCGTCGTTATGGCGCATCTAATGTACAATCATGCTGGTGGCAGCCAGCACAATCAGAGCGGCAGCGAGACCGGCAaatag
- Protein Sequence
- MAATGSAQPVPAGGSFDFDAAIVCRICLRSVTAVGEEMHFIYDEAPVEQGANLAQILNECTRYTCDRFDDKMPHKMCELCTKAARHAYRFKRDAEKSYCSLMALLGRTLNSSRSDVCTQTEQVALLPCEMCHDQFLNSLELRLHRNRVHKARDSGSSTGTGPNATANEGVVVQQLKCKFCPQHFPHLRQLRTHLARSHSQAERLQCPHCQTAFTRRDHMLRHIRNIHKKEADSTWPPLEDEATIQSCTGDELVSAEVLLNEDENDEGDAYQCNINPISSNEEEDELNDEEAKKELWLHIKPEPCLEAEDLDLKVEKKLRRRKGKTETEEERRTTSEAAAVKDEPMPSADTAVQATLHIKEESQPAAGCVNDDENENEGREEDDVMNDSRRPEVPLELPLSDEDGEEEDYEYGDEDEESDLEDDDHDEDDGEEMDDVPPEGVNRSNLEIVRDYLRKGKPLKRRRRNKQSGEANPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHSCPQCPKAFARSDHLKAHVQSLHSNKEHKCTLCEAAFARPEALDRHKVSKHNGEGLVAGSKLNLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFKERQQLREHEKSHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYMCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLEDATQSHLTTVVMPPVRYQSSSSSSGPDPNQQLEQQMGGPVAAMGTGIESSSATIIHHHSPPEAASAYNVSPMTTGAGPTTLATSAAEAVTTIDGVAYAPAPAPPTPTPVNAAPFGAFNFPPVVMAHLMYNHAGGSQHNQSGSETGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00474649;
- 90% Identity
- iTF_00601203;
- 80% Identity
- -