Basic Information

Gene Symbol
ct
Assembly
GCA_900245975.1
Location
NW:4708168-4779813[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.6e-27 4.3e-23 80.7 0.0 3 72 991 1061 989 1066 0.95
2 3 6.5e-32 4.2e-28 96.7 0.0 3 77 1476 1551 1474 1553 0.96
3 3 4e-31 2.6e-27 94.2 0.0 3 76 1764 1838 1762 1841 0.96

Sequence Information

Coding Sequence
ATGCAGCCAACATTGCCACAAGCCGCTGGGACAGCCGATATGGATCTGACGGCTGTTCAATCAATCAACGATTGGTTTTTCAAAAAGgagcaaatttatttattggcacAATTTTGGCAACAGCGCGCTACCCTTGCCGAGAAGGAAGTGAACACACTCAAGGAGCAACTGTCCACCAGCAACACGGATCccgccagcggcagcatccacagcgacagcgacaacagccacaaccacaacacagGAGCGtcagtggcaggagcaggagcaggagcagcagaaggggaATCAGGCGTACAGGAGATCGAGGATTCAGATCTGGAATTGGCCAGCGGAGGcgctggatctggatctggccATCAGCTGAACAGCTCCATTGTTGCAGCGGCCATCACGCTGCAGCAGAACGGCGGCAATCTGCTGgccaacaccaacacgccGTCGCCCTCGCCGCCGTTGCTCAgcgccgagcagcagcaacagttgcagaGCAGCCTGCAGCAGAACGGTGGTGGTGTCGGCGGCGCCTGCCTCAATCCGAAGCTCTTCTTCAATCACGCCCAACAAATGATGatggaggcggcggcagctgccgcagcagcagcagcggcggcggctgtccaacagcaacatcagcattCGCCTCTGCATTCCCCAgcagcggaggcagcagccgcagcgtcGGCTGTGGGACCCACAGATCATCAAACGGTGGCCACCGaggccactgccaccaccaccacccacacagcgaccaacaccaccagcagcagcaacaccaccaacagtagcagcggcagcggcaggaggagcCGTGGCAGTCACCTCCAcaacgaggatgaggagcaggacgaggacgatgaagaggatgatgaggaggagaaCGCCTCCATGCAGTCGAATGCAGCGCATTtggacgatgatgacgatgacatggagctggagccccATCAGTCCCTGGAGGCCATCGAATCTGCGGCAAGAACTGAaccacaccaacaccaacagcagcagcagcagcatcagcagcggcagaggcatgCGGCGACTGGCGATCCGGAGGAGGTGTCTgctgtggccgctgctggCGATTCGGAGACTGTGGCAGATGATGAGGAAGCTAGTTTAAATGTTAGCAATAATCACAATACCGATAGCAATAATAGTTGTAGTcgaaagaacagcaacagcaacagcgtcGGCCCGGGTGTGGCAATGCGTGAtagcaatgatgatgatgatgatgatgatgatgatgatgtggatgatCCGCATGTGGCAGCATCGGTTCATAGTGCCGAGGATGATGACTGTACCAACAACaataccagcaacaacaacaacaacagcgagaAGCAGCGCAGGaagcgcaacaacaacacaaacagcaacagcaacagcaacaatcagCACGCTGTGCAAATTGCTGCCAAAGACAAAGAGATTAAAGCACTTCTCGATGAGCTGCAGCGCCTGCGTGCCCTGGAACAGACGCATCTGGTGCAGATCCAGCGCTTGGAGGAGCATCTGGAGGTGAAGCGGCAGCACATTATGCGCCTTGAGGCACGCCTCGACAAGCAGCAGATCAATGAGGCACTGGCCGAGGCCACGGCCTTGGCTGCCGCCGTCAATGCGGctgccaccaacaacaacaacaacagccagagcagcgacaacaacaagctGAACGCCACCTCCCCACTagaggcagcagctggagcagcagcaggcaacgaCCTGAATTCCACCCAGGCCTCAGTCCAGGCtgaggacgatgacgaggaggaggaggaggatgaccACCACCAGGCCATGCACGTGGACAATGACGAGGGAGAGGAGGCCGCCGCCACCAgcacccaccagcagcaggtcgacgaggaggacgatgatgaggaggatgacgaGACCGAGGATCAGGAGCATCATCAAGCGGCCATGTCAAACCAAGCCACAGCCAATGCCGACAGCAGCGAGCTGAAAATCAAAAAGGAACAGCACAGTCCTTTGGATCTGAATGTTCTGAGTCCCCAGTCGGCCATTGCGGCcgcggccgctgccgcagctgccgccgcctgtgCCAACGATCCCAACAAATTCCAGGCTCTGCTCATGGAGCGGACCAAGGCCCTGGCCGCCGAAGCCATCAAGAATGGTGCAGCCGGCGGCAGTGACTCTGCCAATGCGATCAGCGAAGATGCCGGATCCCAtccgcaccaccaccaccagcagcagcagcagcagcaacagtcgctgcaccagcatcagcagcaccaccagcagcagcagcaccacctccagcaacagtcgcagcagcacaacagcagcagcaacagcagcagctgcaattcGGGTCCTGGCAGCACCACCGATGGCGCCCTCAACCACCATCACGCGCACGGACATGGCCACCACTTGGTGGGCCACAATCCGCACGGCCTGCCCCACGGGCATCCGCATGGACAGCTGCTGCATCCGGCAGCGGCCCACCACCTGCACCACGCCGACTCCAACTCCTCCAGCGCCAACAGCACACCCAGCAGCACCGCCCAGCTAGCGGCCAGCCTGGCCAGCACCCTCAATGGCAGCAAGTCCCTGCTGcaggcagccgctgccgccaatGCCGCTGCCGTGGCAGCCGGCGCCGTCGCTgaggacaacaacaacggtcTGAcgcccaatgccaatgccaatgcagcggcagcagcagcggccatgGCCGCTCACGCCCAGCATGCGGCGGCCCTGGGACCGGGCTTCCTGCCCAGCCTGCCGGCCTTCCAGTTTGCCGCCGCGGCGGCCGCCAATCAGGATGCGCGCGGCCACTATCGGTTCGCGGACGCGGAGATGCAACTGCCGCCGGGTGCCTCGATGGCCGGCCGCTTGGGCGAGTCGCTGATACCCAAGGGCGATCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTACGCCAACCAGGCCCTGGACACGCTGCACATCTCGCGCCGTGTGCGGGAGCTGCTCTCCGTGCACAACATCGGACAGCGGCTGTTTGCCAAATACATACTCGGCCTGTCGCAGGGCACCGTCTCGGAGCTGCTCAGCAAACCGAAGCCCTGGGACAAGCTGACGGAGAAGGGACGCGACAGCTACCGCAAGATGCATGCCTGGGCCTGTGACGATAACGCCGTCATGCTGCTCAAGTCGCTGATACCCAAGAAAGATTCGGGACTGCCACAGTATGCGGGACGTGGCtcgagcggcggcggcggtggcgatgATTCCATGTCGGAGGATCGCATTGCACACATCCTGAGCGAGGCCTCGTCGCTGATGAAGAGCACagccgcccagcagcagcgggagcagcaggatCAGCACAGCAACGAGGACAGCAAGTCGCCGCCACAGAGCTGCACATCGCCGTTCTTcaaggtggagcagcagctgaagcagcagcaccagcagcatcgcGACCAGCAGCACATGGCCTCCGAGCAGCGGGACGCTGTGGTGGccgccgcccagcagcagcaccagcagcatcagcagcagcgggagcagcgcGAACGGGAgcgcgagcagcagcagcgactccgCCACGAAGATCTGGCCCAGGACAAGATGGCACGACTCTACCAGGAGCTGATAGCCCGCACACCACGCGAGGCAGCCTTCCCCAGctTTCTGTTGTCGCCATTCTTTGGTGGTGCCGCCGGCATGCCCGGCGCGGCCAATGCATTCCCAGTTCCCGACGAGAACATGCGCCACGCCTTCGAGCGGGAGATcgccaagctgcagcagcagcaccagcagcagcagcagcaggcggctcaggcgcaggcccaggcccaagtCCAGGCAGTGTCCGGCTTCCCCAACTTCTCCAGCCTGatggcgctgcagcagcaggtgctcAATGGCGCCCAGGATCTCTCGCTGGCCGCCGTCAAGGACATCAAGCTGAACGGACAGCGCGGCTCGCtggagcacagcagcagcagctccaaggaCGGTGACCGCGACGATCCGCGCGACTATCCACAGTCGCTGCATGGCCGCAAGTCCGACACACCGGCCCCACCCGCGCCCCCAGCTCCGCCCGCGGGCAGTGGCGGCAGTGTGCCCGGTTCGGCCAACAGCCTCTCGAGCGTCCGCGATGGCGGCGTGGGCGCCGGCGCCGGCTCCGTTGGTGCCGGCAGTCATGCCAGCAACTCGGCCGCACCCAGTCCGCTGAGCAACTCCATCCTGCCGCCGGCACTGAGCAACCAGGGCGAGGAGTTTGCGGCCACCGCCAGCCCACTGCAGCGCATGGCATCCATCACCAACTCGCTGATCACACAGCCGCCGGTTACGCCGCACCACAGCACACCGCAGCGGCCCACCAAGGCCGTCCTGCCGCCCAtcacgcagcagcagttcgACATGTTCAACAATCTCAACACGGAGGACATTGTGCGCCGCGTGAAGGAGGCTCTCTCCCAGTACAGCATCTCGCAGCGGCTGTTCGGCGAGTCGGTGCTGGGACTGTCGCAGGGCTCCGTGTCCGATCTGCTGGCACGGCCCAAGCCCTGGCACATGCTCACCCAAAAGGGACGCGAGCCCTTCATACGCATGAAGATGTTCCTCGAGGACGAGAACGCGGTGCACAAGCTGGTGGCCAGCCAGTACAAGATTGCGCCCGAGAAGCTCATGCGCACCGGCAGCTACTCCGGCAGCCCCCAGATGCCGCAGGGCCTGGCCAGCAAGATGCAGGCCGCCGCCCTGCCCATGCAGAAGATGATGAacgagctgaagctgcaggaGCCGGCACAGGCGCAGCACATAATGCAGCAGATGCAGGCGGTGGCCATGTCCGcggccatgcagcagcagcagcagcaggcggcagccgccgccgcagccgtggccgcacagcagcagagccagcaccagcatccccatcagcatccacatccgcatccgcacacacaccagcagcatcagcagcaccagcaggcagccgcagccgcccaGGCAGCCGCCGCGCTCCACCATCAGAATATGCTGCTCACATCGCCGGGTCTGCCGCCCCAGCATGCCATCAGTCTGCCGGCCTCGGGCGGCGGTGCTGTCTCCTCTGTGGGCTCGCAACCTGCCGGCCAGGGCAGCGCCGGCGGACCCTCGGGGCCACCGTCGAGTGGCGAGAAGAAGCCCATGCTGATGCCAGTACATGGCGGGGCACATGCGCCCAATGCGATGCGCAGCCTGCACCAGCACATGTCGCCCACCGTGTACGAGATGGCGGCACTCACGCAGGACCTGGACACGCACGACATCACCACGAAGATCAAGGAGGCGCTGCTGGCGAACAACATTGGCCAGAAGATCTTTGGGGAGGCGGTGCTGGGCCTGTCGCAGGGCTCCGTGTCGGAGCTGCTGAGCAAACCGAAGCCCTGGCACATGCTCTCGATCAAGGGGCGGGAGCCGTTCATCCGCATGCAGCTGTGGCTGAGCGACGCCAACAATGTggagcggctgcagctgctcaagAACGAGCGGCGGGAGGCGAGCAAGCGGCGTCGCAGCACCGGACCCAACCAGcaggacaacagcagcgacacctCCAGCAATGACACCAACGACTTCTACACCAGCAGCCCCGGACCCGGCTCCGTGGGCTCCGTGGGCGGTGCGCCGCCCAGCAAGAAGCAGCGCGTCCTCTTCTccgaggagcagaaggaggcaCTTCGGCTGGCATTCGCCCTCGATCCGTATCCCAATGTGGGCACCATCGAGTTCCTGGCCAACGAGCTCAGCCTGGCCACGCGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTGCCGCACGGCCAGCCCGGCCAGGACAATCCCATACCGAGTCGCGAGAACACCAATGCGACGCCCTTCGATCCCGTCCAGTTCCGcatcctgctgcagcagcgactcgTCGAGCTGCACAAGGAGCGCATGGGATTGGGCGGTGCGCCCATACCCTACCCGCCGTACTTCGCGGCGGCCGCTCTGCTCGGCCGCAGCCTGGCGGGCATACCGGGCGCGGCGgctgccgctggcgctgctgctgccgcggcGGCTGTGGGTGCGGCCGGCGTCGGTGTGGGGgacgagctgcagctgcaggccctCAATCAGGCGTTCAAGGAGCAGATGAGCGGCCTGGATCTGTCCATGCCGACGCTGAAGCGCGAGCGCAGCGATGACTATCAGGACGACCTAGAAATGGACGCAAGTGGCCACAACATGAGCGACAACGAGTCGCTCGAGGGCCAGGAGGCGGAGGACAAGGCCGTCTCCGAGTACGAGAAGGTCCTGCAAAAGTCCGCCCTCGCCTCGGCGGCTGCCGCCTACATGAGCAACGCCGTGCGCAGCTCCCGCCGCAAGCCGGCGGCCCCCCAGTGGGTGAATCCCGCTGGCACCACCACACCCAATGCGGGActggcagccgcagccgtggcagcggccgcagcggcagccgctgtGGCGGCCCAGGCCGGCGCAGGCAGCGACAGTGAGCGCATTATCAACGGTGTCTGTGTGATGCAGCAGGGCTCCTCCGACTATGGTCGGGACGATGCTGATGGCAAATCCGTGGAGGCGGGCGGCAATGATTCGGAGCATGAGCACGCCCAGCTGGAGATTGACCAGCGGTTCATGGAGCCCGAGGTGCGCAtcaagcaggaggaggacgacgacgaggaggaggaccagcaacagcaccagcatcatcagcagctggATGCTGGCCTCGATTGCGAGGCAAGCGAGGCGGAGAAGAAGCTGAAGGTGATCAACGAGGAGAAGCTGCGTCTGGTGCGCGTCAGTCGCCTGAGCACCGGCCAGGGTGTCGTCGACTCTGAGGAATCATCAGCGACCTGTGTCGCCGCCGCAGTAGCCGGTGGCAGCGGGACAGTGGCAGGCGCCGCCCAGGCGGTAGCCAGTGCCGCGCCAGCCGCTGCGTGGAACTACTAG
Protein Sequence
MQPTLPQAAGTADMDLTAVQSINDWFFKKEQIYLLAQFWQQRATLAEKEVNTLKEQLSTSNTDPASGSIHSDSDNSHNHNTGASVAGAGAGAAEGESGVQEIEDSDLELASGGAGSGSGHQLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSSLQQNGGGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAVQQQHQHSPLHSPAAEAAAAASAVGPTDHQTVATEATATTTTHTATNTTSSSNTTNSSSGSGRRSRGSHLHNEDEEQDEDDEEDDEEENASMQSNAAHLDDDDDDMELEPHQSLEAIESAARTEPHQHQQQQQQHQQRQRHAATGDPEEVSAVAAAGDSETVADDEEASLNVSNNHNTDSNNSCSRKNSNSNSVGPGVAMRDSNDDDDDDDDDDVDDPHVAASVHSAEDDDCTNNNTSNNNNNSEKQRRKRNNNTNSNSNSNNQHAVQIAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNSQSSDNNKLNATSPLEAAAGAAAGNDLNSTQASVQAEDDDEEEEEDDHHQAMHVDNDEGEEAAATSTHQQQVDEEDDDEEDDETEDQEHHQAAMSNQATANADSSELKIKKEQHSPLDLNVLSPQSAIAAAAAAAAAAACANDPNKFQALLMERTKALAAEAIKNGAAGGSDSANAISEDAGSHPHHHHQQQQQQQQSLHQHQQHHQQQQHHLQQQSQQHNSSSNSSSCNSGPGSTTDGALNHHHAHGHGHHLVGHNPHGLPHGHPHGQLLHPAAAHHLHHADSNSSSANSTPSSTAQLAASLASTLNGSKSLLQAAAAANAAAVAAGAVAEDNNNGLTPNANANAAAAAAAMAAHAQHAAALGPGFLPSLPAFQFAAAAAANQDARGHYRFADAEMQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGSSGGGGGDDSMSEDRIAHILSEASSLMKSTAAQQQREQQDQHSNEDSKSPPQSCTSPFFKVEQQLKQQHQQHRDQQHMASEQRDAVVAAAQQQHQQHQQQREQREREREQQQRLRHEDLAQDKMARLYQELIARTPREAAFPSFLLSPFFGGAAGMPGAANAFPVPDENMRHAFEREIAKLQQQHQQQQQQAAQAQAQAQVQAVSGFPNFSSLMALQQQVLNGAQDLSLAAVKDIKLNGQRGSLEHSSSSSKDGDRDDPRDYPQSLHGRKSDTPAPPAPPAPPAGSGGSVPGSANSLSSVRDGGVGAGAGSVGAGSHASNSAAPSPLSNSILPPALSNQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLASKMQAAALPMQKMMNELKLQEPAQAQHIMQQMQAVAMSAAMQQQQQQAAAAAAAVAAQQQSQHQHPHQHPHPHPHTHQQHQQHQQAAAAAQAAAALHHQNMLLTSPGLPPQHAISLPASGGGAVSSVGSQPAGQGSAGGPSGPPSSGEKKPMLMPVHGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLGGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAVGAAGVGVGDELQLQALNQAFKEQMSGLDLSMPTLKRERSDDYQDDLEMDASGHNMSDNESLEGQEAEDKAVSEYEKVLQKSALASAAAAYMSNAVRSSRRKPAAPQWVNPAGTTTPNAGLAAAAVAAAAAAAAVAAQAGAGSDSERIINGVCVMQQGSSDYGRDDADGKSVEAGGNDSEHEHAQLEIDQRFMEPEVRIKQEEDDDEEEDQQQHQHHQQLDAGLDCEASEAEKKLKVINEEKLRLVRVSRLSTGQGVVDSEESSATCVAAAVAGGSGTVAGAAQAVASAAPAAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00471398;
90% Identity
iTF_00480766;
80% Identity
iTF_00514794;