Dfuy001520.1
Basic Information
- Insect
- Drosophila fuyamai
- Gene Symbol
- -
- Assembly
- GCA_018153365.1
- Location
- JAECXW010000393.1:5487136-5491060[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0042 0.32 11.5 0.5 1 23 208 231 208 231 0.96 2 12 8.7e-05 0.0068 16.8 4.4 1 23 236 259 236 259 0.95 3 12 1.9e-05 0.0015 18.9 2.0 1 23 264 286 264 286 0.98 4 12 7.5 5.8e+02 1.3 5.8 1 23 292 316 292 316 0.94 5 12 0.00083 0.065 13.7 4.2 3 23 327 348 326 348 0.95 6 12 0.0033 0.26 11.8 0.2 1 23 354 377 354 377 0.96 7 12 0.0047 0.36 11.4 1.6 2 23 388 410 387 410 0.95 8 12 0.0038 0.3 11.6 0.1 3 23 418 438 417 438 0.94 9 12 5.7e-06 0.00045 20.5 2.1 1 23 445 467 445 467 0.96 10 12 0.00021 0.016 15.6 0.1 2 23 474 495 474 495 0.97 11 12 0.00025 0.019 15.4 1.3 1 23 502 524 502 524 0.99 12 12 5.9e-05 0.0046 17.3 3.3 1 23 530 553 530 553 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTGTGCGACTTTGAGAATGGCACCAACAACAGCCACTTCCTGGACATCCAACACCCCAACTGCTGGCCAAGCGAAATGGCCCAAATACGCCTGCAGTTCGTCAACTGGAATCTGAAGATCTCACCTAATGACGGGTTGCCTCAGAAGATCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATAAACGCATTCCGAGTGGCCTGCCAGGAGGCGCAGTTGAAGCTGTCCAACATCTACGACAAGATCGACGCCAGCAGCCTGGAGGATGAACACCAGGAGAACTTGGACCAAGAGCAGGAGCATCAGGGAACAGAAACAACCAAAGCAACAACGACGGTTTCAGCCGAAACACAACCAAACACTGCCACTGACCCCATAGAAATTTTTGTGGATGCCGTAGACATCGACGAGGAAGAGGAGGAGGAGCAGGATGACAAAGCGGAGGAGAAACCGCTGGAGGAAGCTGTTCATCCCGAACTGACCATTAGCTATGCCTGCAAGTTCTGCCTGCAGCCGCAGGAAAGCTACCAGCTGCAGCAACTCTTGCTGGAACACATTAACGCCAATCACGATCCTGAGCAGCCGTACAATTGTCCGGAGTGTGAGGCTTGTTTTCAGGATGCCGCCTCGAGGACCGTTCACCTGAAAAACAGCCACGTGGAGAAGCAACACGCCTGCGAGGTATGCGGCAAGAAGTACGGCGATCGGCACAATCTGCGCCACCACATCGAGAAGTACCATTCGGAGACGGACTTTGAGTGCGGGCTCTGCGAGAAGCGCTTCTACACCCGCAAGAGCCTCAACTACCACATGAAGTGGCACAATCCGGACCGCCAGTTCAAGTGCCGGCACAGCGGCTGCGAGCGGCTCTTCATCAACCAGCGTCATCTCATGTGCCACGAGGCTACCCACACGGGCACCACCGCAAGGAAGAGCGAGCACTGCGGCTTCTGTGGAAAAACATTTATACATCTGAAGACCCTTCGCTGGCACATCTTTAGACAACACGGCGGAGAGAAGCCCTACAAATGTGCCAATTGCACGGAGGTTTTCGCATCCTATGCGGAGAAGCGGATTCACATGCTGGAGCGGCACAGGGAGAACCTAACTCCCATCGAACGGAGCGAGTGCATGCTGTGCCGCCAACCCTTTTCCAGCGAGTGTGATCTAATCCACCACATGTCCGTGGAGCACCTGCAGCGTCCTGCAGCTCCGTGCGGCAGCTGCACGCAGCGGTTCAACATGAAGTCGGCGCTGGAGCGGCACGCCGCCGTCCACTCGGAGAAGGACCGCCCGCACGCCTGTCCGCAGTGCTCCAAGCGGTTCAAGCGCGCCCAGGACATGAAATGGCACATCAAGACGCACGAGAAGGAGAAGCCTAATGTGTGCGATGTCTGCGGCAAGGCCTTTGCCCTCAAATATGTTCTTACTCAGCACCGGTTGAGTCATGAGGTCTTGGAAAAGAACTTCAAGTGTAACGTTTGCGGTCGGTCCTATCTGTTTGAGAAATCTTTGCGGCTGCATCAGCGGGTTCACACCGGCAAAACCTACTACAAATGCGATGTCTGTCAAGAAAGATTTGTCACGCACATTAAGCTTAAAACTCACATGCAAAAGACACACGCCTCTCAGCCGCACTCTGCGGACCACCCTCTGGATGATCTGATCAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAISMFVCDFENGTNNSHFLDIQHPNCWPSEMAQIRLQFVNWNLKISPNDGLPQKICSDCFTKFCSINAFRVACQEAQLKLSNIYDKIDASSLEDEHQENLDQEQEHQGTETTKATTTVSAETQPNTATDPIEIFVDAVDIDEEEEEEQDDKAEEKPLEEAVHPELTISYACKFCLQPQESYQLQQLLLEHINANHDPEQPYNCPECEACFQDAASRTVHLKNSHVEKQHACEVCGKKYGDRHNLRHHIEKYHSETDFECGLCEKRFYTRKSLNYHMKWHNPDRQFKCRHSGCERLFINQRHLMCHEATHTGTTARKSEHCGFCGKTFIHLKTLRWHIFRQHGGEKPYKCANCTEVFASYAEKRIHMLERHRENLTPIERSECMLCRQPFSSECDLIHHMSVEHLQRPAAPCGSCTQRFNMKSALERHAAVHSEKDRPHACPQCSKRFKRAQDMKWHIKTHEKEKPNVCDVCGKAFALKYVLTQHRLSHEVLEKNFKCNVCGRSYLFEKSLRLHQRVHTGKTYYKCDVCQERFVTHIKLKTHMQKTHASQPHSADHPLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00491676;
- 90% Identity
- iTF_00505570;
- 80% Identity
- -