Dfun002036.1
Basic Information
- Insect
- Drosophila fungiperda
- Gene Symbol
- -
- Assembly
- GCA_035042345.1
- Location
- JAWNLM010000028.1:455547-459244[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.054 3.7 8.1 0.1 2 23 186 208 185 208 0.96 2 9 2.9 2e+02 2.7 1.7 2 21 793 814 793 816 0.89 3 9 9.2 6.4e+02 1.1 2.4 3 20 828 846 826 850 0.90 4 9 1.5e-06 0.0001 22.5 2.8 1 23 886 908 886 908 0.98 5 9 0.00069 0.048 14.1 3.6 1 21 932 952 932 953 0.94 6 9 2.8e-05 0.002 18.4 4.2 2 23 960 981 960 981 0.98 7 9 0.021 1.4 9.4 3.3 1 23 987 1009 987 1009 0.98 8 9 0.012 0.8 10.2 0.8 1 23 1015 1038 1015 1038 0.97 9 9 0.029 2 9.0 0.3 1 23 1048 1070 1048 1070 0.98
Sequence Information
- Coding Sequence
- ATGCATTGCAACATGAACGATGTGGCGGATGCAGCCTTCTCAAGTTTCTACGTTGGAAGTCAGctACAGCATGCGGAGCTGTCGCTATCGACGCCCATCCATGCCCTGGAGCACGACAGCAATTTCACCGGCCTCTTTGACGATGATCCCGCCCTGCTCTCGCTTCCCCTAACGACAATAACGGGAGCAGCTGTGCATAAAGTTGCATCGGGCGTTGCAACGGAGACCGCCTGCATTCCATTTGTACAGATTCATACGACagatctgcagcagcaactcgaACCGGGTCGTAGTTATCGCAATGGATTTCGACGACGCACAGCTGAAATCAAATCGGAGGCTGAACTCATTAAATCAGAGCAGGCAGAGGCGGCGGCTAAGGAGCGCATCAATGCAACGCCCACGCCGCCCACAGCCACAAAGACGATTACGAGCGAGGGTTGCTCGGATCTGCCGCTGCACAAGTGTCCCAGCTGTCCGTTCCTCAGCCTCTGCCAGCTAAAGGCCCAAACGCAcatcagcagctgctttgGCGTCGATGCTCAGCGTCGCCTGCAGTGTCCAGGTTGCACGAATATTTTCTACAGCATCgatgtgctgcagctgcatttgaGCACTGATCATCAGCTGGAGTCACAGGAGATAGCCAAGCTGACGGGCAAAACTAACGAAAGACCAGCCAaaaaaccacagcagcaattgctgccAAAAAGTCGCATCTTTATCAAGAATGTGGATTGCTTGAGGGAGCCACATCGCGAGCAGGATGCAATCAATCCATTTTCCGACTTTTTGCCGCTATTGCCCAACTCGCCAGATGGCAGCACTGGCAATATACTAGATCTGCTTGATGATGTTgacgaggagcagcagcaacagcagcaaatctTGCCAATGATCCAAAAACCAGCCGTGCAAAAAATATCCATAAAGAGTGTTGATGTGCTGCGGGAGCCGGCGCTGCTGCCCTTTGACTTCCATCTGCCCAACGCCggagtgcaactgcaacagcagcagcatcagttgcCGTTGCCTCCACTGCCAACCCTGTTGATGGGCAACAATTTGATGGATGTGCAAGAAAAGCCGCGTCAGCCGAAGATCTACATACGCAATGTGGACATATTAAAGGAGCCCATGTTGCTGCCGGGCATTGGCTTCAACGAGGCACCCACCACGTCGACAATCGAGGGTCCCGTGGAGATATTTCCCGCCGAAACGCTACTAACGCCAACCGGTCCAGTGGGTCCACTGCCCGGCTTTGAGCCAGCTCTGGCGCCACTGGTCAACATGTGCGGGGAGTCGTTCAATTTTGATGCCGTTCTCAGTGGTGCTGGCACCACCAGCAGTAACAgtgtcagcagcaacaatttcagcgccttggatttggattttggTGTGGATTTCGATAACAGTGTGCAACTGGAGAcgacaccaccaccaccagcaccaccaccatcagcagcacctTCTGGAGCAGCAGTATCAGCGGGACCAACAGAAGAACCACCATCACAGCAGTCACTTATAAGCGCGCAGCTGGCGGAGCTAGGCGCACTGCCTCAAGATGAGCTGGAGAACTACTTGCCAAGGACGACATTGTCGAAGCAAAAGATCTTCATCAAGAATGTGGACATATTGAAGGCGCCACAGCGTGGTACTTTGCATCTGCGCACCGTCGACGAACTGAATCTGATGAATCGCAACGAGGTGGAGCATCTGATTGTGCCCCATAGGGAGCcgctgcagctggagcagctgtcACTAAATGCCacaggtgctgctgctgctgctgtcacaCTGGAATCGACACTTGTCGATTTCGAACAGGCCCCATCAGCGCCATTGAGCTATGATGATAGCTACGATTTGGCCGAGAATCTGGAAATCTGGCCTTGGATGGAGGAGTCGGTGCCAGAGGGCATCGTTACAGCCTCAGAGATGGAGCACGATGTTACAGAGCAGCTGGAGTTGCCAGACATTGCCGACGATATTTTGATTAAGGATTTCCCGCAACTCTATGCCCAGAAGACGCCCACAGCGGATGCTGTGCCGCCCTTGGTGCCGGTCACTGGCTCACCAGAGCTGTCGGCGAGCTCAGCTGTGCCGACAGAGAACTTGTGTGGGTTACCCGTGCCGCCACTGGTGCCGCTCGCTGCAGAAGCggctgtcgctgctgcctcTACTTCTGCTGTCGGCGCCGATGAGAAGCCCGCACGCATTTATGTGGCCAACAATTTGCTCCCCGCTGCTGTGGAGCGAGCGCCGCTGCCTGGTGGCACCTCGGTGCGTGGCCGCCCATATGGTGCCAAGCAAGCGGGTCAGACCGCCAAACGGCGGCCTGCACAGACCGCAGTCCAATCGCTGGAAGGTGGCAAATGCACCGTGGAGGGTTGCATGTTCCGCTTCAAATCACCGAGCACCTTGGAGTACCATGGACGTTGTCACAATGGCTTGCTCGGCTCCACACAGCCGATGATCTGCCCCGAGTGTCGATCGACGCAGTTTAGCAATTGGAATTGCCTGCACACCCATCTCTGGCGCACCCATGAAATCGACATGGAATTGTACTGCTGCCAGCTGTGCAGCTTTAAGACGCCCATTTACTCGAGGCTGGTGAACACCCATTCCAAGATCCACTCCGAGGAGCGCAACTACAAGTGCGAGCAATGCGGCAAGGGATTCAAGAATACCAAACAGCTAAAGAATCATCGACGATTGCATCGAACCCAAGGACTGGGTATGTCAGCCAAGCCAAGCATTAGCGAGGAGCAGATAGCTTTGCCCACATTGCATCGCTGCGAGGATTGCGGTGCCGCCTTTAAGCATCGCAAAACGCTGCGGGAGCATCTGTGCAAGCAGCGCAACGAGCAGCCACAATGCAGCACCTGTCAGCGCGTCTTTAGCTCGAAGAGCAGCCTCAAGTTGCACATGCATAGTCATCAGGAGATCAAGCGCTTCAAGTGCGACAAGTGCGATCATGAGGCAAATGATCACAATGCCTTCCGGCGTCATCTGGCCACTCATCGGGAGGCCAAACGCTATGCGTGTCCACATTGCGATTTTAAGGCCATACAAAGCACAGCCTATCGAATACACCTGCAGAAAATGCATCCGGAACAGGAGCTGTCAACCATCATATACAAATGCAATGCGTGCACCTTTTCCAGCATCAATCGCGGCCTGCTGCTGGTTCACCAGGCCAAACACGAAACAGCGCAAAGCGAGTCCTCAAAGATCAAAGTAAAAAGTAGCCTCCTGCTTGCCCCAAACGTTAAGGAGCCCAATCAGGCTGAGTTGGTGGCACTTGCAGCGCCAGCAAGCGATTTAATTGCCTAG
- Protein Sequence
- MHCNMNDVADAAFSSFYVGSQLQHAELSLSTPIHALEHDSNFTGLFDDDPALLSLPLTTITGAAVHKVASGVATETACIPFVQIHTTDLQQQLEPGRSYRNGFRRRTAEIKSEAELIKSEQAEAAAKERINATPTPPTATKTITSEGCSDLPLHKCPSCPFLSLCQLKAQTHISSCFGVDAQRRLQCPGCTNIFYSIDVLQLHLSTDHQLESQEIAKLTGKTNERPAKKPQQQLLPKSRIFIKNVDCLREPHREQDAINPFSDFLPLLPNSPDGSTGNILDLLDDVDEEQQQQQQILPMIQKPAVQKISIKSVDVLREPALLPFDFHLPNAGVQLQQQQHQLPLPPLPTLLMGNNLMDVQEKPRQPKIYIRNVDILKEPMLLPGIGFNEAPTTSTIEGPVEIFPAETLLTPTGPVGPLPGFEPALAPLVNMCGESFNFDAVLSGAGTTSSNSVSSNNFSALDLDFGVDFDNSVQLETTPPPPAPPPSAAPSGAAVSAGPTEEPPSQQSLISAQLAELGALPQDELENYLPRTTLSKQKIFIKNVDILKAPQRGTLHLRTVDELNLMNRNEVEHLIVPHREPLQLEQLSLNATGAAAAAVTLESTLVDFEQAPSAPLSYDDSYDLAENLEIWPWMEESVPEGIVTASEMEHDVTEQLELPDIADDILIKDFPQLYAQKTPTADAVPPLVPVTGSPELSASSAVPTENLCGLPVPPLVPLAAEAAVAAASTSAVGADEKPARIYVANNLLPAAVERAPLPGGTSVRGRPYGAKQAGQTAKRRPAQTAVQSLEGGKCTVEGCMFRFKSPSTLEYHGRCHNGLLGSTQPMICPECRSTQFSNWNCLHTHLWRTHEIDMELYCCQLCSFKTPIYSRLVNTHSKIHSEERNYKCEQCGKGFKNTKQLKNHRRLHRTQGLGMSAKPSISEEQIALPTLHRCEDCGAAFKHRKTLREHLCKQRNEQPQCSTCQRVFSSKSSLKLHMHSHQEIKRFKCDKCDHEANDHNAFRRHLATHREAKRYACPHCDFKAIQSTAYRIHLQKMHPEQELSTIIYKCNACTFSSINRGLLLVHQAKHETAQSESSKIKVKSSLLLAPNVKEPNQAELVALAAPASDLIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00522548;
- 90% Identity
- iTF_00499210;
- 80% Identity
- -