Dfor008603.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila formosana
Gene Symbol
salm
Assembly
GCA_035045625.1
Location
JAWNOW010000311.1:10587155-10597237[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 5e-06 0.00032 20.9 0.9 1 23 483 505 483 505 0.98
2 7 9.8e-06 0.00064 20.0 2.1 1 23 511 533 511 533 0.98
3 7 0.017 1.1 9.8 1.5 2 23 926 947 925 947 0.98
4 7 7e-08 4.5e-06 26.8 0.5 1 23 953 975 953 975 0.98
5 7 0.00022 0.014 15.8 2.3 1 23 985 1007 985 1007 0.98
6 7 0.029 1.8 9.1 2.9 2 23 1409 1430 1408 1430 0.97
7 7 2.8e-08 1.8e-06 28.0 1.3 1 23 1436 1458 1436 1458 0.99

Sequence Information

Coding Sequence
ATGAAAAATCTCTTGACAAACGTTCTGTGTGCGATGCGTAGTGACTTTAAGGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGTACCGTCAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCTAGAAGTGCCGACAAAGAAATAGCAAGTGATCAGGAGGATAATGGCGTCTGCTCGCCACTGACATCCGCAACGGCAACCGCAAGCGCTGACAACAGTCCTAGTCCCAGTCGGAGTCCGCGGCGACAGAGCGAGGACGAGGGGGACCGGGAGACAGTGAGTAAGCTGGATCAATTAGATAATGATGCCGATAAGGCCGATGCCGTAGAGGATCATAatcacaaccacaacaataacaacaacaaagtgatTATGACCAAACCGCCAGTGGAGAACGAGCCAGAGGAACACAGTGGCAACTCCAATGCCTCCGTGCCACATTCACCCGCCGCGGCGGCATCGGTGACAGAGGAGGCGGCTGCCCAGCCAACTCCTACGGAAGCAGATGTGGATATGGAGCTACTGGAGGAGGATACGCCGATTCGTCCATGTGATCGGACCTCGACGACGCCAACAGCGTCGCAGGCAGGAAGTGCcggagctgaagctggagttggagctgcGCCTGTGACCCTCGAGGCGATACAGAACATGCAGATGGCCATTGCGCAGTTCGCGGCAAAGACAATTGCAAACGGTTCCTCGGGAGCGGACAACGAGGCGGCCATGAAGCAGCTTGCCTTCTTGCAGCAGACACTCTTcaatctgcagcagcagcagctcttcCAGATTCAGCTGATCCAACAGCTGCAGTCCCAGCTAGCCCTCAACCAGGTGAAGCCGAACGAGGAGGATGCCGAGGACGAGGTCGAGCCCGAGGAGCGCGAGGATGGGGAGACAGACACgtacgaggaggaggagcgcaTTGCGGATATGGAGCTCCGCCAAAAGGCAGAGGCACGCATGGCCGAGTCCAAGGCGCGACAGCATCTCATCAATGCTGGTGTCCCACTACACGAGCACTCCCGATCCGTCTCACCCCCTGCCACAGCGGAGGCGCTCTCTGCGGACTCGCTGAAGCGCAAACGCGAGGAGGACGCCTGTGGGAAGCCGCTCAGCTCCAGCATGAAGCTGAGTGGGGAGCGGGACAGGGAGCGGGAACGGGAAAGGGAACGAGAGAATTCCAAGGATGCGCTTTCCAAGCTCAAGGAAATGGAGAACATGCCGCTGCCCTTCGGCTCGGACCTGGCCTCCAGCATCATCACCAACCACGATGATCTCCCAGAACCCAATTCATTGGACCTGCTCCAGAAGCGAGCCCAGGAAGTTCTCGACTCTGCCTCCCAGGGAATTCTGGCCAACAACATGGCCGATGACTTCGCCTTCGGGGACAAGTCCGGAGAGGGCAAGGGTCGCAACGAGCCCTTCTTCAAGCACCGCTGTCGGTACTGCGGCAAGGTCTTTGGCTCCGACTCGGCTCTTCAGATCCACATCCGATCCCACACGGGCGAACGTCCCTTCAAGTGCAATGTGTGCGGCAGTCGCTTCACCACCAAGGGCAACCTCAAGGTGCACTTCCAGCGACATGCGCAGAAGTTTCCACACGTGCCTATGAACGCCACGCCTATTCCGGAGCACATGGACAAGTTTCATCCGCCGCTGTTGGATCAAATGTCGCCGGACAGTTCGCCCACACATTCACCTGCTCCAGCGACAAGTCAGCCCGCGCCTTCGACGTCAGCTTTGACGCAGGCTCAAGCCCAGGCGCAGGCAGCGATGTCAATGTCCTTTCCCTCGAGTCCCGCCTTTCCTGGTCTGCAGGGTCTCTACCGCCCGCCCATGGAGTTGCTGAAGTCGTTAGGCGCTGCCGCTGGCAGCTCCGCCGGCCTGCCCTTCTTCCCCCAAATGCCCGGACTGGGCGCGGCTCTGAAGCACAGTCAGCAGCAGAGCCAGGACATGCCCACAGATCTGCGCAAGAGTTCGGGGCCCAGCTCGCCACACGACGAGGAGGAAGACTTGTCAATGGGTCGCCTGCCTGTCAAAACAGAGCTGCTGGATGAGGATAAGCCCGACAACTCGATGCAGGACTCGACGGCAGCAGACGGCGCTGAGCTGGAGGTGGATGCAGAGCCTGAGCCGGAGCCACTGCCGCTTGAGGTGCGCATCAAGGAGGAGCGCATCGACGAGGATCAGGACgcggagcaggagcagcaatgCGAACCGCAGTCGGAAGCAATCTCCCGACGCACGCCGCCGCCCTCGCCGTCGCGTGTGGCGCAGTCGCCACCTCTGATGTCCCGTCATAGCCACTCGGCGGCCATGCTGGGCTATCCCCCGGTGGTGCAACCGATTCAACCGGCAGCACTCATGCATGCCCAGTGCTCGCCCGGCTCACAGTCGCATCTTGATCAGTTGCCGACGCCGGGGCAGCTGCCGCCAACGATGCCGCATCGCGAAGACTTCTTCGCCGAGCGCTTCCCGCTCAACTTCACAACCAAGACGCTGTCGCCGGAGCACCACTCACCCATTCGGTCGCCCGCCAACCATGGCCATGGTCATGCGCATGGCCACGCCCACCCGCACGCCCACACCCACATTCCGCGATCGCCGTTCTTCAATCCAATCAAGCACGAGATGGCGGCACTGCTTCCGCGGCCGCACAGCAACGACAACTCGTGGGAGAACTTCATCGAGGTGTCCAACACCTCAGAGACCATGAAGCTCAAAGAGCTCATGAAGAACAAGAAGATCAGCGATCCCAACCAGTGCGTTGTCTGCGACCGCGTGCTCTCCTGCAAGAGCGCCCTGCAAATGCACTATCGCACCCACACGGGAGAGCGGCCGTTCAAGTGTCGCATCTGCGGACGCGCCTTCACCACCAAGGGCAACCTCAAGACCCACATGGCGGTGCACAAGATCCGCCCGCCCATGCGTAACTTCCACCAGTGTCCGGTGTGTCACAAGAAGTACTCGAACGCGCTCGTCCTGCAGCAGCACATCCGCCTGCACACAGGCGAACCCACCGATTTGACCCCGGAGCAGATCCAGGCTGCCGAGATCCGCGATCCGCCGCCTTCGATGATGCCGGGCCACTTCATGAATCCCTTCGCAGCGGCCGCCTTCCACTTTGGCGCCATGCCCGGTGGAGGTCCCGGTGCTCCACCAGGAGCTGCCGGCATGCCCGGCGGTCCGCACAACGGTACCTTGGGTTCGGAGTCGTCACAGGGGGATCTGGATGATAACATGGACTGCGGGGATGGAGACGACTTTGATGATGCCTCCTCGGAGCATCTGTCGAACAACAATGAGTCGGCGAGCGACGATCGACCGCGCTCCGGCGACGACTTCAAGTCGCTGCTCTTCGAGCAGAAGCTGCGCATTGATCCCACCGGTGTGGTCAACATCAATAGCCATCAGCGCCCGCGATCCGTCGCTAGCAATGCCAATTCCATTGGCTCCgtctccgcctccgcctcacCTTCCGCTCCCACCAGCCCCAGCTCGCAGCCCAAGCCTAGCTGTTCGCCTGTGCGCTCGATCTCGGAGGCCTCTCAGGGAGCGTTGGATCTGACACCGCGGGCAGCTCCTGCAACGCTGGGGTCCGGCTCCAGCTCGAGGTCACCGCTGCCCCTGGCGGCCGAGCGCAAGGAGAAGACTCTTAGCCCGCAGATAGACAGACAGCAACCGCCGTCACGCAGTCCTAACGGCCACGCATCACTGCTTTCCTCCCCGCTGCCGCCTTCGGTGGGCATCGATTGCCTGCCGCCGGGATTGCAGCAtcacctgcagcagcagcaccagcatctgatgcagcagcaggctgcagtggcagctgcagctgccgcccaGCACCATCATCACCAGATGCAGCAACACGCCGCCGCTCTGCATCAGCACCAGGAGCAACTGCGTCGCGAGGCTCAGGAAGTGCAGcagaaggcagcagcagccgctgccgccgccgcagccgccgTCCAGCGTCAGACGTCGCCACAGCCGTCGCCGAGATCGAGTGAAGCCAGCGGCCCCAGTCCTGGTCAGCCCAATCCGCTGATGGCGGCGCGTCCGCCCTTCGGCATGTTCCCCAACCTTCCCATCTTCCCGCCGGCGACGACGCAGAATATGTGCAATGCCATGAACCAGATCGCGCAATCCGTGATGCCGGCGGCGCCGTTCAATCCGCTGGCGCTGAGCGGCGTCCGGGGCAGCACCACGTGCGGCATCTGCTACAAGACATTCCCCTGCCACTCTGCGCTTGAGATTCACTACAGGAGCCACACCAAGGAGCGTCCTTTCAAGTGCAACATCTGCGATCGCGGTTTCACTACCAAGGGCAACCTCAAGCAGCACATGCTGACACACAAGATACGCGACATGGAGCAGGAGACCTTCAGGAATCGTGCAGTAAAGTATATGAATGAGTGGAGCGACGATCGCGAATAA
Protein Sequence
MKNLLTNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSADKEIASDQEDNGVCSPLTSATATASADNSPSPSRSPRRQSEDEGDRETVSKLDQLDNDADKADAVEDHNHNHNNNNNKVIMTKPPVENEPEEHSGNSNASVPHSPAAAASVTEEAAAQPTPTEADVDMELLEEDTPIRPCDRTSTTPTASQAGSAGAEAGVGAAPVTLEAIQNMQMAIAQFAAKTIANGSSGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQVKPNEEDAEDEVEPEEREDGETDTYEEEERIADMELRQKAEARMAESKARQHLINAGVPLHEHSRSVSPPATAEALSADSLKRKREEDACGKPLSSSMKLSGERDRERERERERENSKDALSKLKEMENMPLPFGSDLASSIITNHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFGDKSGEGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTHSPAPATSQPAPSTSALTQAQAQAQAAMSMSFPSSPAFPGLQGLYRPPMELLKSLGAAAGSSAGLPFFPQMPGLGAALKHSQQQSQDMPTDLRKSSGPSSPHDEEEDLSMGRLPVKTELLDEDKPDNSMQDSTAADGAELEVDAEPEPEPLPLEVRIKEERIDEDQDAEQEQQCEPQSEAISRRTPPPSPSRVAQSPPLMSRHSHSAAMLGYPPVVQPIQPAALMHAQCSPGSQSHLDQLPTPGQLPPTMPHREDFFAERFPLNFTTKTLSPEHHSPIRSPANHGHGHAHGHAHPHAHTHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGAMPGGGPGAPPGAAGMPGGPHNGTLGSESSQGDLDDNMDCGDGDDFDDASSEHLSNNNESASDDRPRSGDDFKSLLFEQKLRIDPTGVVNINSHQRPRSVASNANSIGSVSASASPSAPTSPSSQPKPSCSPVRSISEASQGALDLTPRAAPATLGSGSSSRSPLPLAAERKEKTLSPQIDRQQPPSRSPNGHASLLSSPLPPSVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAAALHQHQEQLRREAQEVQQKAAAAAAAAAAAVQRQTSPQPSPRSSEASGPSPGQPNPLMAARPPFGMFPNLPIFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNEWSDDRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00534052;
90% Identity
-
80% Identity
-