Dfla012164.1
Basic Information
- Insect
- Drosophila flavopinicola
- Gene Symbol
- -
- Assembly
- GCA_035042425.1
- Location
- JAWNLL010000452.1:11419957-11424081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0035 0.22 12.1 0.6 2 23 262 284 261 284 0.94 2 9 0.015 0.91 10.1 4.6 2 23 418 440 418 440 0.91 3 9 0.0066 0.41 11.2 2.3 3 23 530 551 528 551 0.94 4 9 0.00036 0.022 15.2 0.7 2 23 780 802 779 802 0.96 5 9 0.0048 0.3 11.7 0.2 2 23 851 873 850 873 0.92 6 9 0.011 0.71 10.5 3.6 2 23 920 942 919 942 0.96 7 9 0.11 6.9 7.4 4.2 2 23 956 978 955 978 0.92 8 9 0.0043 0.27 11.8 0.3 3 23 1040 1061 1039 1061 0.96 9 9 0.051 3.2 8.4 0.6 1 23 1153 1175 1153 1175 0.99
Sequence Information
- Coding Sequence
- ATGGCCGCATCCATATATGCCACCCCACCGCCAGATCTGAGCAGCGAGGACACTGCGCTCTCCGATGTCTCCAACTCATCCACACTCAACACAAAtcgcggcggcggcagcaacaacagcagcaacaacagcagccataacagcaacaacaacaacaacaacagcaacaacagtcacACATTGCAGCCACATGAAGCCACAacagacgcagcagcagcagcagcaacagcaacagccacaacaacaacagcaactacaacagcagcaggagcaacaatGTCACCCAGTCAAAAGTCACTGCCGGACACGGAGTCCAAATCAAAGCCGGGAAGCAACACAACTGAAACAGCAGCGGAGGGACAGCAGGAGGCTGAATTCGAGGGCGACGGCGAGGGCGAGGGCGAAGGAGAGGGCGATGCAGATCTGGATCCAACGGCAATGGCCGCTATGGCAGCCGCCGCAGCTAATGCAGCAGccatgcagctgcagctcctcgagGCACTCAACGATGCGGCGAAGAAGCGACGCAAGCAGCACAATCCCAGTCGCTTGGAGGCGCTCAATCTGAGCGGAGGCGAAGGGGACGAGGGCGCGGCGGAGACGACGGCCAATGCCGTTGTGGACTACGAAGAGAAGCTGTCGAAGATGCTGCTGCCCAAGTCCATCGAGAAGCTGAAGGAGACCTTTgagatgctgcagcagcagaagctgcaGCCGGAAGACATATCAGAAGCGGAGTTGAAGGAGCAACCGGATCAGTCGATGATCAATCCCTATCAGAcctactgcaagcagtgcggCGAGAACTTTGAGACGGAGTTTAAGCTCAGTCTGCACATGTTGCAggatcatcagcagcagcacgagcacgaccaacagcagcatcatcagcaacagTTGTCGTCAGATGAGCCCATGGATCTGCTCTCGTCCATTAAAGTGAAGCTGGAGCGTGCGGACAGTCCCgctcagcagcaggagctgcaccAGCAGCAGATGGAGCTGGCCAATgggcacagcaacaacagcaaagagcATGATCACTGGCTGCAGGCTAtggcccagcagcagcaacagcaacatcagcaactgcagcagcaacatcagcaggcGGGACTTCCCGGCATGCCGCCCACCTTTGCCTTCTCCCCGGAGGCAGCTGCGCTCGGCTGGCCGCTGCTGGGCATGCCTGGCTTTGGGGGCGTGGACGCGCTGAATCGCCCGCCCTTGCGCATCTTTAATCCCGAGGCATATTGCGAGCTGTGCAACAAGGAGTTCTGCAACAAGTATTTCCTCAAGACGCACAAGGCCAACAAGCACGGCATCTTCGATCCTGCCGGTGACTTGGCCACGCcaaacaacaatatcaacaacatgaacatgaacaacaacaacagcagcagcagcaacaacaacaacagcaacagccataacagcagcagcatcagcatcagcaacagcaacaacaacgtcagcagcagcagctccacttCCATGTaccaacagctgcaacagttgccacGCGAGCCGCCAGCACCACAGAAGCCGGAGCCACAGCTGACACCACCAGCGCCGCCAACGGTGCACTGCGACATCTGCTCGAAGAGATTCACCAATGTGTTCGCCATGCGCCGCCATCGCGCCAAGCAGCATGaaccggccacgcccactgcctcGCCAACGCCCCAAACGCGTCGGGGCAGTCccaatgagcagcagcagcccatcAAGCTGGAGCCACTGACGGATACGCTGCCCGTGCCGGAACCGAAGCCATATCAGCTGCCGGAGGGTTTTCGTGAGGACTTCACactggagcaggaggaggTGGCCTTTGCGCCGCCGCCACGCAAGCTTCCACCTCAGCTGCATCAGCAGGTCAGGGAAGCCATCTCCTCGCCGGACAAGCTACGCCGCCTGGGCGTGCAGCTGCCGGAGGCGTTCTGTGAGCTGTGCTGCAAGGAGTACGCGAACCGTTACTTTCTGCGCACGCACAAATGGAAGCGCCATGGGGTGTTTGTGCCgcccgaggagctgcagctaGGTGGCAAGGAGGAGCAGTCCCTAATGCCCGCCGGCTGGCCCTTTATGCCGCTCAATCTGATGCTGGCCAAGGCGGCTGCGGAGCAGGAACACCAGCCGGAGCTGGAGCAACAAAATGAAGACGAACAGCAGCTGCTAGACGAACAGCAGCCGAGCAAGCGCATCAAACTGGAGCCCTACGATGAGTCTGCGCCCGCAGAGAAAGTGGACAACTCGGTGATGGGCTTGCAGAATCTGCAGAAGCTGCAATcgatgctgcagcagctcaacgATTTCAATGGTAAGCGACCGCTGCCGTGTCACCTCTGTGGACGTGAACTGGAGCATCAGTATGCGCTGCGTGCTCATCTTATGACGGAGCACGCCGGCCAGCTGCTGCCCGAGGGACATCCAATGCtctaccagcagcagcagcagcaacagcagcaacagttgccgctgaAGCTGTCGCCCGTGGGCGGCGGTTCACccatcgctgccgctgccacgcccactccgaATGAGCTGCGCTGCCAGCAGTGCGAGCGCGACTTCGCCACCGCACAGGAATTCAAGCAACATATCGCCGAGGTGCATCTGGGTCGCATTCCAAGCGGCAGTCCGCTGCGCGAGGGCTTCTACACGCCGGAGCGGGCAACAGTTGCTCCGGTTGCTGCCGGGGCTGCTGCAGCGGGACCGCCGCGTGCCACTTATACGATCACGCCCACGTCCAGCTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACGCACATGCAACGCATGCACGGCATTGAGATCGAGAATGGCGCCCAGATTGGCGGCGTCGTGTGCAACATCTGCAACAAGGAGCTGTGCAGCAAGTACTTCCTGCGCGTGCACAAGCACAACACGCATGGCATCATTGAGGATGGTGCCCCACTGCCTCAGCCACGTGGCAGCTCACAAAATGGCCTCAAAGCAgaggcacagcagcaacagcagcagcagcagcaacaacagcagcagcaacagttgctcgaGCCAGAGGTGAACCTGACAACACTGCCAGTCGACTCGAGTACGAGTCCCAATGAGCTGTGCCCGCTGTGCGCGAGACAGTTCCGCAGCGCCAAGTGGCTGCGCACTCATCTGATGAACGAACATGGCCCCGCCGGCGTGGAGAAGCTCagggagctggagcagcagcagcagcagcaacagcaacagccgacgataagcagcagcggcagcaagcCCAACAGTCCCACGCTCAAGATACCCAACGGCAATTCATCGGGCGGGAATCCGGCCAACAATCTCGCCCAGGCTCTACAgaatgcacagcagcagctattcGGCCAGATGCAGCTGCCCAAGGGGATGCCGCTTCCGTTGCCAATGCCCGGCATGTTTGAGCAGACGCCGCGCTTCAAGGAGTACCAGTGCTCCTTGTGTCCCTTTACCACACCCTATTACGCATTTCTCTTCATACACGAACGCTCGCATGCCCTGCTTAACTCGGAGGAGACGCATGTGGGCGCCGAGGCGGAGACGCCACGCAATGATCGCGACAGATCCTTTGCCTTGGTGCAGGGCAAGGCCAGAACAAAGCTGAGCCGAGAGCGTTCCGATGTGGACAACGAACCCACGAACCTaaccaccaacagcagcagcagcggcaatagCAACATAAagacagccacgcccacgcccacagcgTTACCCTCGCCAGGCACAACAGTTGTGGCCGCCTCGCCCAAGGCACGTTCCGCCACAGTGACGCCCACACCCAGACGACgcagcaccaccaacaccaacaccagcaacacctCCCCCAAGCCGGGCACGCCCAACGGCCTTGGCGCCCAACGCTCGGCGGCCACCTCACCCTTTGAGATGTGCGGCGATCTGGCGAATGGCAGCGGCAAGCCAGCCAGCTATGCGCAGCCGGATAAGTCCGAGGAGGCATATCAGATGCAGGCCTTCCACTTGGCGCcagccgatgccgatgccgaggTGTTGTTTGCGCCAGCCCTGGTCTATTTGCCGGTGCGAGTGCGTGCCTCCGAATCGGCCACACTAAGCTTCAGGCTGACACCAGCCTAA
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNSSTLNTNRGGGSNNSSNNSSHNSNNNNNNSNNSHTLQPHEATTDAAAAAATATATTTTATTTAAGATMSPSQKSLPDTESKSKPGSNTTETAAEGQQEAEFEGDGEGEGEGEGDADLDPTAMAAMAAAAANAAAMQLQLLEALNDAAKKRRKQHNPSRLEALNLSGGEGDEGAAETTANAVVDYEEKLSKMLLPKSIEKLKETFEMLQQQKLQPEDISEAELKEQPDQSMINPYQTYCKQCGENFETEFKLSLHMLQDHQQQHEHDQQQHHQQQLSSDEPMDLLSSIKVKLERADSPAQQQELHQQQMELANGHSNNSKEHDHWLQAMAQQQQQQHQQLQQQHQQAGLPGMPPTFAFSPEAAALGWPLLGMPGFGGVDALNRPPLRIFNPEAYCELCNKEFCNKYFLKTHKANKHGIFDPAGDLATPNNNINNMNMNNNNSSSSNNNNSNSHNSSSISISNSNNNVSSSSSTSMYQQLQQLPREPPAPQKPEPQLTPPAPPTVHCDICSKRFTNVFAMRRHRAKQHEPATPTASPTPQTRRGSPNEQQQPIKLEPLTDTLPVPEPKPYQLPEGFREDFTLEQEEVAFAPPPRKLPPQLHQQVREAISSPDKLRRLGVQLPEAFCELCCKEYANRYFLRTHKWKRHGVFVPPEELQLGGKEEQSLMPAGWPFMPLNLMLAKAAAEQEHQPELEQQNEDEQQLLDEQQPSKRIKLEPYDESAPAEKVDNSVMGLQNLQKLQSMLQQLNDFNGKRPLPCHLCGRELEHQYALRAHLMTEHAGQLLPEGHPMLYQQQQQQQQQQLPLKLSPVGGGSPIAAAATPTPNELRCQQCERDFATAQEFKQHIAEVHLGRIPSGSPLREGFYTPERATVAPVAAGAAAAGPPRATYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEDGAPLPQPRGSSQNGLKAEAQQQQQQQQQQQQQQQLLEPEVNLTTLPVDSSTSPNELCPLCARQFRSAKWLRTHLMNEHGPAGVEKLRELEQQQQQQQQQPTISSSGSKPNSPTLKIPNGNSSGGNPANNLAQALQNAQQQLFGQMQLPKGMPLPLPMPGMFEQTPRFKEYQCSLCPFTTPYYAFLFIHERSHALLNSEETHVGAEAETPRNDRDRSFALVQGKARTKLSRERSDVDNEPTNLTTNSSSSGNSNIKTATPTPTALPSPGTTVVAASPKARSATVTPTPRRRSTTNTNTSNTSPKPGTPNGLGAQRSAATSPFEMCGDLANGSGKPASYAQPDKSEEAYQMQAFHLAPADADAEVLFAPALVYLPVRVRASESATLSFRLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00499185;
- 90% Identity
- -
- 80% Identity
- -