Dfic004169.1
Basic Information
- Insect
- Drosophila ficusphila
- Gene Symbol
- -
- Assembly
- GCA_018152265.1
- Location
- JAECXK010000407.1:10632402-10638225[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.1 12.9 0.5 1 23 147 169 147 169 0.97 2 13 5.2e-05 0.0037 17.5 3.0 1 23 376 398 376 398 0.98 3 13 1.5 1.1e+02 3.5 1.7 1 23 404 427 404 428 0.91 4 13 6.2 4.4e+02 1.5 1.3 1 23 449 472 449 472 0.92 5 13 0.00099 0.07 13.5 1.9 3 23 807 827 806 827 0.92 6 13 0.14 9.7 6.7 1.2 1 23 833 856 833 856 0.97 7 13 0.0021 0.15 12.5 0.6 1 23 936 959 936 959 0.97 8 13 0.014 0.99 9.8 0.4 1 23 1076 1099 1076 1099 0.90 9 13 0.016 1.1 9.7 4.0 1 23 1111 1133 1111 1133 0.98 10 13 0.00032 0.023 15.0 0.7 2 23 1139 1161 1138 1161 0.94 11 13 0.0044 0.31 11.4 3.2 2 23 1168 1192 1167 1192 0.92 12 13 0.00041 0.029 14.7 2.1 1 23 1197 1219 1197 1219 0.98 13 13 0.0019 0.14 12.6 0.1 2 23 1226 1248 1225 1248 0.94
Sequence Information
- Coding Sequence
- ATGGCGCTGCTCAAGAGGAAAATCTTGCACTCGGCCGCAAATTCGGGCGCCGAGGTGGACTACAAGTTTTCTTGTCGGTGCTGTTTGAAGACGGATGTGGAGTACCTAAAACTGGACTCGGTGTCGGTGGCGCGCAGTCTGGATCCAGCGGATAAAGCGGACAAGATTCCGCTTCTCCGTTGCTTGCTTTATTGCGTGAGCGCCGAGAACGCCCCGGAGCTCCCGCAATACATATGCATTGAGTGCAGTAAGAGCCTTCAGGTGGCCTACTATTTCCTGAAGAATGCGCAGCGGGCCCACGAGATCCTGTGCAGGAAACTGTGCCCTAAGGGTGTAAAGAGATTGAATGGCACCTTGGCCCAAGAGCCGGAGAAAAAAACAGGAGATTATGCCCTCGAAGAAACGGAGGCGGAGATGAGGCCCATGAAAACCATGCGCCATGAATGCCAGGTGTGCGGAGTGGTGCTCTACAATCGTTTGGAGCTAAAGCAGCACATACGTCAGCATGCAGAGGGAATCTCCTACAACTGCAAGTTGTGCAGCCTTGTCACGCTGAAACAACGTGTTTTACTGGAGCACTACATGACCAACCATGGCTTGTCCCCTAGGCAGGCGGAGGAGCATATGAAATTAAAGAATCTGCCAGCAAGCAAGGACGAAGAGCCCAAGCCAGTGTGTACACTGGAAGACATGGAACTGCTGATACCCACAGTTCTAACGCCAGATGACTATGCGCAGCCACTGCCAGCGATAGATCCTGAGCAGCTGCGCGACATCGAGCAGCAACTGGCCGTCAGCATGGGTGAGACGGCGCCGGGAGTCGATACACTCACTTCCACCTTGCCACCGATGGACACGCCCAATATGAGCATCGGCACCGAGTACCTTGTTCTCCCCGATGGCTCGCTGCAGCAGGTCAACGGAAGCGGCGTGGTCATAGAGTATATTGACGATAGCAAGCCGAGCAATCCCTCCAATATCAATATTAGCCTGCATAACCTTCTGTCCAGTAGTAATGAAAACGAAGGGATAGATATGGATGTCAATGAGCTGATAGTAGAGGAAACAATGCCGCAGATAAGAATCAAACCAAAGCCAACCATTGGCGGATCGCCCATTTACAAGCACAAGTGCAAACTTTGTCCCAAAACGTTTTCCACTGTGGCGCGCCTTAAATCTCACCAATTGACCCACAGCAACTTGCCCAAGTTCTTCTGCGACCAGTGCGATTTCTACTCGCTGCGAAGCGCCGATCTCATTCAGCACTACAAGATGGTTCACCATCGCTCAGATGAAAACGGCAGGAGCGGCAATAACACAGCACTGGGCGGTGATTCGCGCGTATACTCGTGCGACTTGTGCCTCTTTGAAACACACACTCCCCTTCAGCTAAGGTCTCACTACACGGAGCTGCACAAGATTCAGACGACGGAAGTGCAACTGCGTCCGAGTTGGACGGGTGAGGCAGGAGCCAGCTCGGTGCGAACTGCAAGGAATACTGTTTCTTCCAAGGAACAGCTGGCGGCCAGGAGATCAGACCAAGTCAACATCCCTGTGAGCATTAAATATCCGACAATTGTTGCGCAAACACAGGTACCAGTGCAACAACCGGAGCCAATGGTCAGTACACCAACGACCATCACGCAAACGGGGGGACTCAACGTGTTGGTGGATACCACGCCGCTATTCTATGCGATGACCCAAAATTCGACGGTGGTGACCAATTCGATTCCAGGGACAGCGGATGTGGAATCCAGTACAGAGGCCAACAACAATGCATTTGAAATCTTTCCGGAAATCTCAGAGGGCAACCTGCCAGTGAACGATTCCGATCAGCAAATTCCAGCCTCTACGGCTAACATCTCGATAATGCCAATGAACGAATCCGTTCAGCAAACTTTAGCTAATGCGTCGAACACTTCGATGTTGCCTGTGAACGAACCCGTTCAGCAAATTCCAGCAAATGCGTCTAACACTTCGATATTGCCAATGAACGAATCCGTTACACAAATTCCAGCAAATGCGTCAAACATTTCAATGTTGCCTGTGAATGAAACCGTACAGCAAACTCCAGCTAATACGGCAAACATTTCAATTTTTGGGGACATGCAGGAATTTATTGACAACACCGATGTGGCTGCGATATGCACCATTCCCGCGGATGACATGCCCGTTGTTGATGGTGATGACATTGTGATCGATAATAACAACATCAGTCTGGACTTTGATGCTGAGAATTTGTTTGAGGAGTTTGAGGAGGAGGAAGATGCGGTCGGAGAAGAGGAGGAGGAAGATGACAACGATGACGAGAATGATAACAATGACGCCGCTACGGATCAGAATCTGCTGCTAACCAGCGACGATGATGATGTAGACGACTTTGATGACGAGCAATCGAAGCATTTGCAGAAGCCATACTGCATATACTGCAACAAAAAGTTTACCAGCCAGTATAAGTTCGAAAATCACATGTTTGTCCATCGGGGGTTGGCGCCATATCGGTGTGAGCTGTGTACCAACCTTTACAACTTGAAACGATTGCTGATCAGGCACTACAAATCGGTACATAAACGGATGCCGACGAGGGATATGGTTCAGGCCAAGGGCGATAAGGTTTCCGTAGCCCGCTCCAACATTGAGAAGCTCTATCCTGGCAAGATGAAGAAGCCCATGCTGATGTGCGCAAAATGTCCGTTTGAGTGCGAAGCGGATGCGGAAATGAAGAAGCATTTAAATGCCCACCACGGCATCAATGATGGTGTGTCCGTGCATGCAAACGAGGTGTTTATTATACGCAAACTACCTTTTGAGTGCCCGCGCTGCATTCGCTCATTTGCGGCCAAGAGCACCCTCAGCCGCCACCTGCAGCGCAGTCACTTGGTGGACACGATCATTGAGATGCCAACGCCGCAAACGGCGGACAGCACCACAACAGCAACTTCAACGGCTACAAGTTCCGAAACGGAGAATCCGGTCCAAGATGATAACAAACATATTGTGATGGTACAGACGGACGGTGGGGCTGAGAGGATGACAACTGATGCTTCAGGCAATAGCGTTGGCAATGAAGGAGCGGGCACCGATGATGGATCATCCACTAATATGAATGCTCCGTCCGGGAGCAGCGTGCTTAACGGCAGCGACAAGCTGCTGACCACCGCCGCCCTGGCAGCATCGCCAGTAAAGGGTCTTCGATCCAACACCCGCCTGCCCCGCCACTCCATTTACACGTGCAAGGTGTGCAACACGCCTTTCGACGAGCTGGGCAAGTTGGTTAAGCATGAAACGGAGTTCCACTCCAATACAGAGCCATCGCGCTGGGGCTATCAGCACAAGTGTGCCGTCTGCAATACTTCATACCGCACACTAACGCTGCTCAAGTTTCACATGAAGCGGCACACCAGCCGGAGAATACAGTGCCGGTTATGTCCTAAAACATTTGTGACCAACCAGGAGCTTGACAGGCACACAAAGGGCAAACACGGAAGAGATAAGCCGTTGCGGTGTTCCTTAGATGGCTGCCGCAAGATGTTTGCCTTCAAGCATCATTTGGTTCGCCATCAGAACGCCACGCATCTGGACACACCACACAAATGCCCTGTTTGTGACAAGGAATTGCAGTCCAGGCTACATTTGAAAAATCATATGATCGTGCACAAGGGAGCGGTGTGTATTAAGTGTCCCAAATGTGATCGACCCTATATGCGACCTGGCAGACTCCAATCACATGTCCTCAATATTCACAACATCCGCCTGACCGCCGAAGAATTGACTGCCATCACCTCACAGGCCCAGGCCCATCCTCCAACTGATCTGAAGGTAAAGACGCGTCGTAGGGATCTGGATGGGGAAAAGGAAATCCACGACGAGACCGCAGCTGCTGCTGATAATTCCAAGTAG
- Protein Sequence
- MALLKRKILHSAANSGAEVDYKFSCRCCLKTDVEYLKLDSVSVARSLDPADKADKIPLLRCLLYCVSAENAPELPQYICIECSKSLQVAYYFLKNAQRAHEILCRKLCPKGVKRLNGTLAQEPEKKTGDYALEETEAEMRPMKTMRHECQVCGVVLYNRLELKQHIRQHAEGISYNCKLCSLVTLKQRVLLEHYMTNHGLSPRQAEEHMKLKNLPASKDEEPKPVCTLEDMELLIPTVLTPDDYAQPLPAIDPEQLRDIEQQLAVSMGETAPGVDTLTSTLPPMDTPNMSIGTEYLVLPDGSLQQVNGSGVVIEYIDDSKPSNPSNINISLHNLLSSSNENEGIDMDVNELIVEETMPQIRIKPKPTIGGSPIYKHKCKLCPKTFSTVARLKSHQLTHSNLPKFFCDQCDFYSLRSADLIQHYKMVHHRSDENGRSGNNTALGGDSRVYSCDLCLFETHTPLQLRSHYTELHKIQTTEVQLRPSWTGEAGASSVRTARNTVSSKEQLAARRSDQVNIPVSIKYPTIVAQTQVPVQQPEPMVSTPTTITQTGGLNVLVDTTPLFYAMTQNSTVVTNSIPGTADVESSTEANNNAFEIFPEISEGNLPVNDSDQQIPASTANISIMPMNESVQQTLANASNTSMLPVNEPVQQIPANASNTSILPMNESVTQIPANASNISMLPVNETVQQTPANTANISIFGDMQEFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLFEEFEEEEDAVGEEEEEDDNDDENDNNDAATDQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNLKRLLIRHYKSVHKRMPTRDMVQAKGDKVSVARSNIEKLYPGKMKKPMLMCAKCPFECEADAEMKKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCIRSFAAKSTLSRHLQRSHLVDTIIEMPTPQTADSTTTATSTATSSETENPVQDDNKHIVMVQTDGGAERMTTDASGNSVGNEGAGTDDGSSTNMNAPSGSSVLNGSDKLLTTAALAASPVKGLRSNTRLPRHSIYTCKVCNTPFDELGKLVKHETEFHSNTEPSRWGYQHKCAVCNTSYRTLTLLKFHMKRHTSRRIQCRLCPKTFVTNQELDRHTKGKHGRDKPLRCSLDGCRKMFAFKHHLVRHQNATHLDTPHKCPVCDKELQSRLHLKNHMIVHKGAVCIKCPKCDRPYMRPGRLQSHVLNIHNIRLTAEELTAITSQAQAHPPTDLKVKTRRRDLDGEKEIHDETAAAADNSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -