Dfic003286.1
Basic Information
- Insect
- Drosophila ficusphila
- Gene Symbol
- -
- Assembly
- GCA_018152265.1
- Location
- JAECXK010000407.1:18422061-18430530[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00015 0.011 16.1 3.4 1 23 128 150 128 150 0.98 2 11 0.00073 0.052 13.9 10.5 1 23 157 179 157 179 0.96 3 11 7.3e-05 0.0052 17.0 6.5 1 23 185 207 185 207 0.98 4 11 0.00033 0.024 15.0 1.6 1 23 213 235 213 235 0.95 5 11 1.6e-05 0.0011 19.1 0.5 1 23 241 263 241 263 0.97 6 11 1.1e-05 0.00075 19.7 0.1 1 23 269 291 269 291 0.98 7 11 9e-05 0.0064 16.7 2.0 1 23 296 319 296 319 0.97 8 11 0.0072 0.51 10.8 0.6 1 23 325 348 325 348 0.96 9 11 0.00012 0.0086 16.3 0.1 1 23 410 432 410 432 0.98 10 11 0.011 0.78 10.2 2.7 1 23 555 577 555 577 0.95 11 11 0.0032 0.23 11.9 4.9 5 23 590 608 582 608 0.92
Sequence Information
- Coding Sequence
- ATGCCCTATTTGTTATCGACGGATGGATCATTGGCTGTTCAAAAGGATGTCAAGGGCCTCACTGGCGGCAAAAATAATGTCGTACGCCGCATGTTTGTTGTAAACGATCCAAACTTTCCGCCTGGAACTCAGAGAGTAATTACCGCCGGTGGACCATCGACGGTGGTCAAGAAACAGGATCCCAATCAACAGGTCCTGAGCCTCGACAAGAACTTTCAAGTACAGAAAGTAATTCAAGGACTTGAGGATAACGAGGACTCGCAAGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACTATCAAGAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCACTTGACAACCCACGCCCGCGTGCACACAGGTGGTGAACGCCCCCACATCTGCACCCACTGCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTTCACTCCACGGAGAGACCTTATCAGTGTCAGGAGTGTAAGAAGAGCTTCACCCTTAAGCACCATCTGCTGACCCACTCGCGGGTCCACAGCCGCGAGCGACCGTTTGTCTGCCAGGAGTGCGGGCGCGCCTTTCCGCTCAAGCGGCACCTGGTGACGCACAGCAAGTTCCACGCCGGCGAACGGCCATATGTCTGCGAGGAGTGCGGGGAAAGCTTTGCCCAGGAGAACCACCTGATTATGCACTCACGCTTTCATGGCTCATTGAATCCATTTGTTTGCGCTGATTGCGGAGCCTCGTTTCCACGCAAGTTCCAATTGGTTAACCACGGACGTATTCACGGCAAGATTCCCCATTCGTGTACGGTGTGCGGCAAGGAGTTTCTACAAAAGCGAACGCTAGTTTCCCACATGAGACGCGTACACACTGGTGAGCAGGCGCATCCTTGCGTCAGCTGCGGCGAGGGTTTCCTTACCAAGGCCGAATTACATCAGCATGTGAGGACGGCGCATAATGGCGTCAATCCGAATACGAGCAGTGCAACCATTATAGCTAATCAACAGCTGCAACAGGCCCATCATCATCAGTCGGGACAGCAGACGCATCCGCAGACCATAACCGTGGTTAGCAATCCGGGTAACTCCACGTTGCTGACTGTCTCCACAACGGATGCCAATGGTGTGGCTCGTCCACAGTTTGTGTGCCGAGAGTGCGGCAGTGCGTTTAATAGCCGAGAGGCCTTGGCACTTCACTTGCGCCTTCACACTGGCGACAAGAGCCTGATGACAGATCTGTGTGCCTTGACCGCCGCGCTGCCGGGACACTTCTTGAGCACGGCCAGCCTGAATCCAGGCACGGTGGTAACGGCCAATCCGAATCTGGTGGGCCAGAGTCCAGTGCCAGTGCAGATCATATCGTCCACCGGTCAGGTGATGTCGCAGACCACGCTGGTGCAGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCGTCTCCGCACCGCCGGCCAACAAGCCGAAATCGCATTTCTGCGCCAGTTGTGGCAAGGGATTCGCTGCGAAGCACGGACTCATGCAGCACAATCGGCGTCACCCGAACGGTGGATGCACGGTGCGCACACACGTGTGCGAGTGCGGCAAGGCCTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTGGAGACGAAGCCCGCCATATCGCAGCAACAGGTATGCTAG
- Protein Sequence
- MPYLLSTDGSLAVQKDVKGLTGGKNNVVRRMFVVNDPNFPPGTQRVITAGGPSTVVKKQDPNQQVLSLDKNFQVQKVIQGLEDNEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCADCGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNGVNPNTSSATIIANQQLQQAHHHQSGQQTHPQTITVVSNPGNSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSAPPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00605002;
- 80% Identity
- -