Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.6e-09 9.3e-06 25.1 0.0 17 41 1 26 1 29 0.88

2 4 1.2e-14 2.4e-11 43.0 0.1 2 39 40 77 39 80 0.94

3 4 2.6e-18 5.3e-15 54.7 0.0 1 45 94 139 94 139 0.98

4 4 2.7e-20 5.5e-17 61.1 0.0 1 43 146 189 146 190 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.6e-09	9.3e-06	25.1	0.0	17	41	1	26	1	29	0.88
2	4	1.2e-14	2.4e-11	43.0	0.1	2	39	40	77	39	80	0.94
3	4	2.6e-18	5.3e-15	54.7	0.0	1	45	94	139	94	139	0.98
4	4	2.7e-20	5.5e-17	61.1	0.0	1	43	146	189	146	190	0.97

Coding Sequence: ATGAGCCTGACGAAAGCATCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGCGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTCGGCATCCCATCCTCGACGCTCTACAAGATCGCCCGGCGCGAGGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGCGCCTTGGAGGCGATACGGGCGGGTAACACCTCGGTGCAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGCTCGAATCCGACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTATAACCTGCCCTACAGCTCGCTCTACGGACGCTTCAAGCGCGGCAAATACGATGTGGTGGCCAACACGAGTGGCGTCGCGCTGCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGTTGCATATGTTACAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCGCCAACGCCGCAGCACCACAGCACGCCGCAGCACCACAGTACGCCGCAGGGTCCGCCGACGCCGCAGCACATGCAACAGCACGTGGTGCACATGCAGCAGCAGCAGCAACAGCAGCAACAGTCGCCCCATCCTGGCCACCATCCGCAGCACATGCAACAGGATGTGGTCACATCGAGCAGCCAGGTGGTGCACAGCCAGCAGCAGCAGCAGCTTCAGCAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
Protein Sequence: MSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSTPQGPPTPQHMQQHVVHMQQQQQQQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHHGTPERS

Sequence clustering based on sequence similarity using MMseqs2