Basic Information

Gene Symbol
Trerf1
Assembly
GCA_035045725.1
Location
JAWNOU010000127.1:1744684-1757323[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.1e-09 9e-06 25.9 0.1 2 45 1716 1759 1715 1760 0.93

Sequence Information

Coding Sequence
ATGTGCAGCGCATCTGTCGGCAGCGAGGGTTCCGTAACACTGCAACTAAGAGATGCGAATGCCTTTGAGGCAGCCGACAGCAcgataacagcaacaacagcaccagcaacaacaatagcaacaaatgtAATAGCAACATCGTCATTAGGCACCCAAGCGAATGGCGTCACAGTGCTTGAAACGTTCTCGGCATCGTCAGGAATAACGTCAGCATTGGAGAATGCGCTGACCATTGGCTATCCGGATCCGGACATGTTAGCAGATGTCTTGGGCACCATACAGACCGCCTcacttaaaaacaaacaaaatagcaGCAATACTAACGTCTATATCAACAACAGTAAGCGAAGTAGCTACATCAATGGTAGCAGCAGAAGAAACAGCAGCACTTCAACAACACTTCTGAACAACACCCTAGCAACAACGAGCTCTGGAGTTCATCTGACTGGTCCCAATAAAATAACGATAACGCGACGCAGTGCCAGCAACAAGATCAGCGTGCAAACTGTAAGCGCTTCCACAAATACAACCATTAGCAGCATTGGCGGCAGTAAGACCAACTACATAAAGAACTGTCTAATacggagcagcagctgcagcaacacgGCCACCAATGTTACTACGCTGGCGCAGATtatgagcaacagcagcaccagcagcgcaGCCAGTTTACTCAGTCagcacaataataatagcaactgcagcaacagcagcaacttcaGCAACGCCTCATCCGTTGGCAGCAGCATTAGcattggcagcagcaacagcagcaacagcagcagtaacgacagcaacagcagcagcggtcaCAGTTTAAGCTTCAAGAGCAACGGTCGAAATGTTTCTGGTATCGTAACTGCAGCAGCATCCACGAACACCACAGCCACCGGCATTGGCATTATCACCGTCGATAACGCACCCAGAAAGAGCCGACCCAAACTATCCTCACCGACTCGTCACGGGCCCCAGCAGTGTCAGATTTGTAGCAAAATCTTTGGAAATGCTTCGGCACTGGCCAAGCACAAACTGACGCACAGCGACGAGCGGAAATATATTTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACGCATCGCAACAAGAAGCCTTACGAGTGTAAGGCAGATGGCTGCGGCAAATCATATTGCGATGCGCGCTCTCTCCGCCGTCATTCAGATAATCACCATGGAGGCGTGGCAACGCTCAATAACAACTCACTCTCGCCCACAGCCAGATCAAACTGCGGCAGcggaaacagcagcagcagcagcagcagtgtgggtgtgggtgtggctaCCAGCTCACTAAGTCTTTCGCCGGCTACAGCTAGTGGGGACGCCAGCTCGCCAGATGGGGCCACTTGCATTCGCACCTACATTTCCACAGGCAGCTCTGTGGTGGATGCTGCCACTGGCATTGCGCTGTCCGATGAACAGATCAACGCTATGAATTTGCCCATTAAAACGGGAGTCACATTGCTGTCGCCCACCACTTCGACATCCTCAATAGCATCGTCAACAACATCCTCATCATGCTCAACATCTGGCGGTAGCGGCAGCTCCTTTCTGACTAGTTCGCCCACAATTACGCTTAGTGATGGCGCAACCTTAGAGGGCGATGGACTCACGCGCGAGCAACTCGATCTCATAAGCAAGATCATGCAACAGACGAAGCAAACCAGTGCCCAGGTGACGGTCTCTTCGCCCAACAGCGTCAGCTCCTATAAGATCAATACAGAGACGGCGCCAGTCTCGGCACGTCCACGCACGTGGAACATGCAATTGCTCAATAATGCGCAAAATGTCACCGTAACCGTGGAGGATGGTACCGATATGGTTGCCTCCGCTTCAAGTTCACCCGACGAGGTCAAGGACGATGAATTGAACCAGCAGCTAGTGGCCGCTATTAATCCCCACCTGCTCAATATTGTTAAGATCGACAAGCCAGTTGAGTGCAATCTATGTCACCGAAAGTTCAAAAATATACCCGCTCTCAATGGGCACATGCGTCTGCATGGCGGTTACTTCAAAAAGGATCCAGAAACCAAGCGCAGCGAGAAAAAGGACTCCAACGGACCACCCTTGCAGACTGCGAGCATAGGTGTGCGTGCCCTTATCGAGGAGAAGATCATTAGTAAGCGCAAGGATATCAATAAGGGCGCCTTCGTTGTGCCTGCTCCACCCAGCAGCACCGTATGCAACGGAGGTGTTGGTGGctgtagcaacaacagcgacagccTGCGCCGCTCCTTAAACGACTTAGAGAGCTTCTTAAGCCCGAAGAGTAACACGAGCAGCCTAAGCCAGGCACTAGCCACCAGCACCAGTACTACTACAGCGGTGCTGCCTGCGGCTACCACTATCAAGAGCAGCTCTGGGCTAAGTATACAGCAGATTGGACTGCCGCAAAGTATTGAGATCTTCAGCGGAGGTCACAGACATCCCAAAACCCTTAATTTGGGCAGTGGTGCCAATACTATTACCATAACCACCAACAACGTGCCAACCACAACTACCATGAGCGCACTGACGGCTCTTAAGGGCGGCGGTAGCATCAGTGGCGTCACTAGCAATGCGGACTCCAAGGACTCGACATTAATTGAGTTACTTAAGCGTGGAACGCGCATTGCCGTGGCCTCTAAGAAAACACAGCTACAGGCACAAAACAGTACAAATCTAATCTTAAGCAATGTTGGCGACTCGGAGCTCACAACCATTAGCAGCAGTGTCCAGGCTGGTCGGCAAATTATCACCAACAACAATCGCACCGTCATCATACCTTCTGATGTGCACGTGGTGTCCACCAAGAGCAAGTTAATTTCTAGCAACGCCCTTACAACCAACGACAGCAATACAACTTGTTCAGCGAGCCGTATATCATTGCCTGACGGGACTCCCCTCTCCCTGACCATTACGCCCAGCCAGGAGAGTGTAGGTGTCGGTGAATCAAACAGCATAGCTGGTGGTGGGGGTGTTTACACTGTTACTTACACTAGTGATGCAGATGCATCCGATCTCTTCGACGACGCTGAGGTGTACAATGTATCGGACACGGAAATGCTACTGCAAACGGTGGATACTATGGAACTGCTCAACGATGACGAGGACGAGGTGCACAAAACCGAACATTCCGAAGACTTTTCGCTGCTCAGTGAGGCCGGCGATAATGTTCACACACAGCTGGTCAAGCTGGAGCACGGTCCTGTACGCAGCAGCACAGCCAGCAGCCTCAATAAAACGACGCCGTTGCCCACCTTTCAGCAATTTCATTCCAAAGAGATTATCATGCAGAACAGTTCTCAAATCCAGGCCATCGCCAACATGCGTGGAAGCAGCACCCTGGGCTTGCTCTCGTCACCGTTGCATTCGCCACTAGCCTACCCGACGCCACCCTCCAGCCACGAGAATGTGGCTCAATCCTCACCCTTTGTAGAGGATGCTGCAGCTCAGTTTGTGGATGCCAGTCACACGTTCTTTGGCGATAAAACAGACTTTTCACAAGTCTATTTTAAAACAGACGAGAGCGATTCCAGGCAGCAGCTCAGTGATAATGACAACGAGAAAATACTTAAACTCAAGTCGGTGCTGGAAGAAAGCAGCTTCGATCCATCCATTAAGGTGGAAGATCTCTTAAACAGCACCGAGGACGATGCCGAATGCGACCTGCGAGAGTTTGCCGAGACGAATCTCTCATTTCTCGATGAGGATCAGGAGTTCCTAAATGACTCACGAAATGCTACCTCGCCATTGTCCGAGTCCTTCTTCACCAGTGGCATTGGATCTGCAGAGGATGTTAAGCAGGTGCTACGTGAGGTGCTGCCCGATGAAAATATGCAACTGCAGCTAACTAGCGAGCAGCAGGGCGAGAACATCATTGATCTTTACTATTTACCTGGGCTGGGCCTGCAATCCCAAATGATGCCAAACTCTGATGATCCGCTTTTGTCCTCCTCACCAAGAGAATTCGGTCAGCAGCGACAGGTTGTCCACACGACAACATCTACGACATCGACCACACAACCTATCGAGCAGTTGCAGTCTACCACTGTACTTTACGATCAACATCAACTACAacagcgactgcaactgcagccccaacagcaacagcaagagcaacagcaggagcaacatcagcagcaacagcagcaggaacagcaatcccagcagcagcaagagcaaatgcaattgccaCAACAACCGGCAATTCAATCTGAACAACCACAACAGGAGCAACAGACAGACTTTATGCTCACCAACTTTACTCCTGTGTCCTGTCAAACACAGTACCTAGATGTCAATCAGCAGTCGATGATGCTGCAGCCACTGAATAGTTTGCTGCAGCCAATACTTtatggcagcaacagcacatCCAACGATAAACAAGCATTTACCTCGATGCTTAACTCGAATGCGGTTCAGACAACTGAACTGGATGCGAGCCTGCTCTTTGCCTGCGGTGACAGCATCAAAAATAACTGTAGCAAACCTATGCTTGCCGCATTACCTGCGGCAGTAGCTATACCAGTAGTCACTTCAACACCGAGCGTTTCCAATCTACAGCCGCTGTCCAACCAAACTAATTCCATATTAAAGCGTCGCCTTCGTTCAAATGGAGCACAGGACGTGCTCAAGTTCTCGAAATTCCAAACACTTTCACCGCACCGCTCAAAACTACGCAAGCCTTCGCGGACCCACTACACACCCGCCCCAATTCTTAATCCAGATCGCAAGGGCACAGGACTCTATTGCAATGTGCGTAAACAGCTCGGCCAAGGAATGTTTGACGTCTTTGACGATGACTTTGGCGATCCTGTGGGCTTGGTTGATTTCTGTGATGAGTCCAAGGTGAATCTTGGTTCCACTTATCAAGCGCAGATCCCAGCCTGCAAATCGCCAGAAGAATCCACCAAGGAAACAATGAATGCAGACCTACTTTGGGATCCAAGCGTACAGATAGACGAGAAGATACTAATGCGTTATATAGATCTCAGCAAATCTTCGGCCGTACCCATGGGTAGCCATTCCGAAGAGGTAGCCCTTCAAGCGCTGCTCGAGGCCAAAGGCAACTCAGCGGCGGCGGTGCTCACTCTGTTGCAAACGCAGTCTAGCGCATTCCAAATGAAATGGACTGCCTATGAGCTAGAGCAGTTTCTACGTGGCCTGGAGAAGTACGGGAAGGACTTTGGAAAAATTTCCAGCGAGTTACTTACGAAGACCTCGGGCGAATGCGTtcaaatgtattatttttggaaaaaacTATGTGTGGACTATAAGGTTTCTCACCTAAAGATGGAGCCAGTTCCTGCCAGCACCCCAGCGGTGGAACAGAAGCCCTACGTCTGCGAGATTGCCGACTGCTCGGCGAGCTTCACCTCGAAAGCGGCTCTGCATGGTCATGTTCGCATACACGCTTATGGCAGAAATGCCAACAACagtaatagcaacaacaacaaccagcatGCCACGGCAACTAGTAGCCATAGCAATCAATGCAacagtgcaacaacaacaatcataacGCACGCCAATGGCAATAACTCTACCCTCAACAACAATATTATCAGCAACAACATAGCACCAGGCTCTTCCATAAATACTGCTCTGttatcagcaacagcagcaacaggaacagcatCGACTGCATCAaaagacagcagcaacagcaacaattccAATACAGCCAAGGAGAGTGAATTTCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTCAAAAGCCGCAGTGCCCATATGAAAACGCATCGAGTACAAGAAGCTGAACAATCATCAAATTCCAAACAGCAATCTAACAATGGAACTCTGTCTGCAGTAGCAGTGGCAGTAGCAGCATCAGCAGTACCATCGGCTCCCTCTGCAGTAAAAGTTCTGGCCACTGCATCTTCTTAG
Protein Sequence
MCSASVGSEGSVTLQLRDANAFEAADSTITATTAPATTIATNVIATSSLGTQANGVTVLETFSASSGITSALENALTIGYPDPDMLADVLGTIQTASLKNKQNSSNTNVYINNSKRSSYINGSSRRNSSTSTTLLNNTLATTSSGVHLTGPNKITITRRSASNKISVQTVSASTNTTISSIGGSKTNYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAASLLSQHNNNSNCSNSSNFSNASSVGSSISIGSSNSSNSSSNDSNSSSGHSLSFKSNGRNVSGIVTAAASTNTTATGIGIITVDNAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSDNHHGGVATLNNNSLSPTARSNCGSGNSSSSSSSVGVGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSDEQINAMNLPIKTGVTLLSPTTSTSSIASSTTSSSCSTSGGSGSSFLTSSPTITLSDGATLEGDGLTREQLDLISKIMQQTKQTSAQVTVSSPNSVSSYKINTETAPVSARPRTWNMQLLNNAQNVTVTVEDGTDMVASASSSPDEVKDDELNQQLVAAINPHLLNIVKIDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKRSEKKDSNGPPLQTASIGVRALIEEKIISKRKDINKGAFVVPAPPSSTVCNGGVGGCSNNSDSLRRSLNDLESFLSPKSNTSSLSQALATSTSTTTAVLPAATTIKSSSGLSIQQIGLPQSIEIFSGGHRHPKTLNLGSGANTITITTNNVPTTTTMSALTALKGGGSISGVTSNADSKDSTLIELLKRGTRIAVASKKTQLQAQNSTNLILSNVGDSELTTISSSVQAGRQIITNNNRTVIIPSDVHVVSTKSKLISSNALTTNDSNTTCSASRISLPDGTPLSLTITPSQESVGVGESNSIAGGGGVYTVTYTSDADASDLFDDAEVYNVSDTEMLLQTVDTMELLNDDEDEVHKTEHSEDFSLLSEAGDNVHTQLVKLEHGPVRSSTASSLNKTTPLPTFQQFHSKEIIMQNSSQIQAIANMRGSSTLGLLSSPLHSPLAYPTPPSSHENVAQSSPFVEDAAAQFVDASHTFFGDKTDFSQVYFKTDESDSRQQLSDNDNEKILKLKSVLEESSFDPSIKVEDLLNSTEDDAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLTSEQQGENIIDLYYLPGLGLQSQMMPNSDDPLLSSSPREFGQQRQVVHTTTSTTSTTQPIEQLQSTTVLYDQHQLQQRLQLQPQQQQQEQQQEQHQQQQQQEQQSQQQQEQMQLPQQPAIQSEQPQQEQQTDFMLTNFTPVSCQTQYLDVNQQSMMLQPLNSLLQPILYGSNSTSNDKQAFTSMLNSNAVQTTELDASLLFACGDSIKNNCSKPMLAALPAAVAIPVVTSTPSVSNLQPLSNQTNSILKRRLRSNGAQDVLKFSKFQTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGMFDVFDDDFGDPVGLVDFCDESKVNLGSTYQAQIPACKSPEESTKETMNADLLWDPSVQIDEKILMRYIDLSKSSAVPMGSHSEEVALQALLEAKGNSAAAVLTLLQTQSSAFQMKWTAYELEQFLRGLEKYGKDFGKISSELLTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVPASTPAVEQKPYVCEIADCSASFTSKAALHGHVRIHAYGRNANNSNSNNNNQHATATSSHSNQCNSATTTIITHANGNNSTLNNNIISNNIAPGSSINTALLSATAATGTASTASKDSSNSNNSNTAKESEFPCKVCGKVFNKVKSRSAHMKTHRVQEAEQSSNSKQQSNNGTLSAVAVAVAASAVPSAPSAVKVLATASS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00802780;
90% Identity
iTF_00491009;
80% Identity
iTF_00506352;